EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000017567 (Gene tree)
Gene ID: 103478182
Gene Symbol: rab13
Alias: -
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 4908 bases
Position: chrLG16:15803733-15808640
Accession: 103478182
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000025990	MMR_HSR1	PF01926.23	7e-05	1	1
ENSPREP00000026006	MMR_HSR1	PF01926.23	8.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000026250	-	1088	XM_008431752	ENSPREP00000025990	200 (aa)	XP_008429974	UPI0004A4FECD
ENSPRET00000026267	-	1136	XM_008431751	ENSPREP00000026006	216 (aa)	XP_008429973	UPI0004A2D6E9

Gene Model

Click here to download ENSPREG00000017567's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000017567's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000017567	rab13	75	33.758	ENSPREG00000019386	rasl11b	63	33.758
ENSPREG00000017567	rab13	96	34.694	ENSPREG00000016102	si:ch73-116o1.2	78	37.423
ENSPREG00000017567	rab13	82	36.310	ENSPREG00000022241	si:dkey-13a21.4	82	36.310
ENSPREG00000017567	rab13	77	31.013	ENSPREG00000010228	dnajc27	81	31.013
ENSPREG00000017567	rab13	91	33.514	ENSPREG00000014761	rabl2	89	33.514
ENSPREG00000017567	rab13	88	36.723	ENSPREG00000022509	rab23	84	36.723
ENSPREG00000017567	rab13	82	41.667	ENSPREG00000012522	-	83	41.667
ENSPREG00000017567	rab13	80	49.686	ENSPREG00000014269	rab11bb	74	49.068
ENSPREG00000017567	rab13	96	40.625	ENSPREG00000017337	rab25b	82	43.605
ENSPREG00000017567	rab13	86	51.163	ENSPREG00000017487	rab12	70	51.163
ENSPREG00000017567	rab13	84	36.842	ENSPREG00000008951	rab34a	59	39.726
ENSPREG00000017567	rab13	79	32.759	ENSPREG00000015955	-	83	32.759
ENSPREG00000017567	rab13	93	40.196	ENSPREG00000015480	rab6ba	86	40.196
ENSPREG00000017567	rab13	79	39.375	ENSPREG00000009813	rab34b	63	39.375
ENSPREG00000017567	rab13	88	56.000	ENSPREG00000010284	rab15	82	56.000
ENSPREG00000017567	rab13	77	36.364	ENSPREG00000010752	rheb	84	36.364
ENSPREG00000017567	rab13	80	43.293	ENSPREG00000007017	zgc:101559	70	43.293
ENSPREG00000017567	rab13	83	45.181	ENSPREG00000017344	-	77	45.181
ENSPREG00000017567	rab13	84	39.655	ENSPREG00000006970	rab9b	78	39.655
ENSPREG00000017567	rab13	79	44.937	ENSPREG00000021505	rab6a	76	44.937
ENSPREG00000017567	rab13	81	33.140	ENSPREG00000006055	rasl11a	67	33.140
ENSPREG00000017567	rab13	78	40.000	ENSPREG00000001832	rab9a	81	40.000
ENSPREG00000017567	rab13	99	52.683	ENSPREG00000020321	rab1ab	87	56.425
ENSPREG00000017567	rab13	83	50.602	ENSPREG00000014634	rab30	84	49.123
ENSPREG00000017567	rab13	95	40.099	ENSPREG00000003221	rab33a	53	41.667
ENSPREG00000017567	rab13	84	49.102	ENSPREG00000006336	-	75	49.102
ENSPREG00000017567	rab13	73	44.737	ENSPREG00000001864	-	66	44.737
ENSPREG00000017567	rab13	93	45.161	ENSPREG00000009605	rab11a	84	46.111
ENSPREG00000017567	rab13	95	52.792	ENSPREG00000017517	zgc:171927	86	54.645
ENSPREG00000017567	rab13	81	42.236	ENSPREG00000010146	rab5c	73	42.236
ENSPREG00000017567	rab13	90	43.784	ENSPREG00000005923	rab18a	67	45.614
ENSPREG00000017567	rab13	88	35.754	ENSPREG00000019341	hrasb	94	35.754
ENSPREG00000017567	rab13	98	42.927	ENSPREG00000017324	rab11al	78	46.429
ENSPREG00000017567	rab13	58	30.769	ENSPREG00000003821	arl3	50	30.769
ENSPREG00000017567	rab13	98	52.500	ENSPREG00000004889	-	86	54.696
ENSPREG00000017567	rab13	96	35.025	ENSPREG00000006363	rras	89	35.028
ENSPREG00000017567	rab13	84	48.214	ENSPREG00000014888	rab2a	79	48.214
ENSPREG00000017567	rab13	88	37.989	ENSPREG00000017750	RAB7A	86	37.989
ENSPREG00000017567	rab13	97	52.020	ENSPREG00000003616	rab1ba	98	51.980
ENSPREG00000017567	rab13	91	47.802	ENSPREG00000005323	si:dkey-16l2.16	87	47.802
ENSPREG00000017567	rab13	80	49.057	ENSPREG00000006357	rab11ba	58	48.447
ENSPREG00000017567	rab13	84	42.262	ENSPREG00000022167	-	86	41.317
ENSPREG00000017567	rab13	85	45.349	ENSPREG00000007129	RAB39B	81	45.349
ENSPREG00000017567	rab13	81	38.272	ENSPREG00000018287	KRAS	93	37.079
ENSPREG00000017567	rab13	97	40.722	ENSPREG00000006119	rab25a	87	43.262
ENSPREG00000017567	rab13	63	36.508	ENSPREG00000016664	rap2b	95	36.957
ENSPREG00000017567	rab13	88	37.989	ENSPREG00000012148	RAB7A	86	37.989
ENSPREG00000017567	rab13	86	45.349	ENSPREG00000010154	rab4a	81	45.349
ENSPREG00000017567	rab13	96	33.333	ENSPREG00000012803	rhebl1	93	34.463
ENSPREG00000017567	rab13	85	55.882	ENSPREG00000019783	RAB15	87	53.297
ENSPREG00000017567	rab13	70	30.128	ENSPREG00000017010	rasd4	74	30.128
ENSPREG00000017567	rab13	81	39.429	ENSPREG00000000880	rab33ba	76	38.798
ENSPREG00000017567	rab13	95	38.462	ENSPREG00000010920	rab22a	97	38.660
ENSPREG00000017567	rab13	85	43.023	ENSPREG00000013962	rab42a	79	43.023
ENSPREG00000017567	rab13	83	36.257	ENSPREG00000020276	RAB29	83	36.257
ENSPREG00000017567	rab13	79	44.304	ENSPREG00000009535	RAB41	75	44.304
ENSPREG00000017567	rab13	54	30.769	ENSPREG00000003600	arl3l2	60	30.769
ENSPREG00000017567	rab13	85	44.767	ENSPREG00000009597	-	81	44.767

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000017567	rab13	99	74.257	ENSG00000143545	RAB13	90	80.328	Homo_sapiens
ENSPREG00000017567	rab13	91	93.407	ENSACIG00000008584	rab13	88	93.407	Amphilophus_citrinellus
ENSPREG00000017567	rab13	99	74.752	ENSANAG00000030247	-	92	79.679	Aotus_nancymaae
ENSPREG00000017567	rab13	100	89.604	ENSAMXG00000030712	rab13	92	92.473	Astyanax_mexicanus
ENSPREG00000017567	rab13	99	73.301	ENSBTAG00000017604	RAB13	85	83.815	Bos_taurus
ENSPREG00000017567	rab13	81	48.148	WBGene00019317	K02E10.1	77	47.368	Caenorhabditis_elegans
ENSPREG00000017567	rab13	91	80.328	ENSCJAG00000009933	-	90	80.328	Callithrix_jacchus
ENSPREG00000017567	rab13	99	73.301	ENSCHIG00000022271	-	85	83.815	Capra_hircus
ENSPREG00000017567	rab13	99	74.752	ENSCPOG00000011491	-	90	80.328	Cavia_porcellus
ENSPREG00000017567	rab13	99	74.257	ENSCCAG00000028502	-	90	80.328	Cebus_capucinus
ENSPREG00000017567	rab13	99	74.257	ENSCATG00000041779	-	90	80.328	Cercocebus_atys
ENSPREG00000017567	rab13	99	73.762	ENSCLAG00000006603	-	85	83.815	Chinchilla_lanigera
ENSPREG00000017567	rab13	99	74.257	ENSCANG00000036573	-	90	80.328	Colobus_angolensis_palliatus
ENSPREG00000017567	rab13	99	74.752	ENSCGRG00001021505	Rab13	85	83.815	Cricetulus_griseus_chok1gshd
ENSPREG00000017567	rab13	99	74.752	ENSCGRG00000012126	Rab13	85	83.815	Cricetulus_griseus_crigri
ENSPREG00000017567	rab13	100	91.000	ENSCSEG00000002358	rab13	100	91.000	Cynoglossus_semilaevis
ENSPREG00000017567	rab13	100	90.500	ENSDARG00000034771	rab13	100	90.500	Danio_rerio
ENSPREG00000017567	rab13	99	76.238	ENSDORG00000001591	Rab13	90	81.421	Dipodomys_ordii
ENSPREG00000017567	rab13	99	74.257	ENSEASG00005000683	-	90	80.328	Equus_asinus_asinus
ENSPREG00000017567	rab13	99	74.257	ENSECAG00000016551	RAB13	90	80.328	Equus_caballus
ENSPREG00000017567	rab13	100	71.921	ENSEEUG00000001233	-	90	77.049	Erinaceus_europaeus
ENSPREG00000017567	rab13	100	88.000	ENSELUG00000012801	rab13	93	90.323	Esox_lucius
ENSPREG00000017567	rab13	99	73.762	ENSFCAG00000045269	-	85	82.659	Felis_catus
ENSPREG00000017567	rab13	66	86.364	ENSFDAG00000014469	-	100	86.364	Fukomys_damarensis
ENSPREG00000017567	rab13	100	95.000	ENSFHEG00000021221	rab13	100	95.000	Fundulus_heteroclitus
ENSPREG00000017567	rab13	100	91.500	ENSGACG00000011925	rab13	99	91.500	Gasterosteus_aculeatus
ENSPREG00000017567	rab13	100	79.104	ENSGAGG00000000742	-	91	82.418	Gopherus_agassizii
ENSPREG00000017567	rab13	99	74.257	ENSGGOG00000023693	RAB13	90	80.328	Gorilla_gorilla
ENSPREG00000017567	rab13	99	73.134	ENSHGLG00000008749	RAB13	86	82.659	Heterocephalus_glaber_female
ENSPREG00000017567	rab13	99	73.134	ENSHGLG00100013608	RAB13	86	82.659	Heterocephalus_glaber_male
ENSPREG00000017567	rab13	100	86.500	ENSHCOG00000007440	rab13	98	94.972	Hippocampus_comes
ENSPREG00000017567	rab13	100	90.050	ENSIPUG00000003199	rab13	93	93.011	Ictalurus_punctatus
ENSPREG00000017567	rab13	99	75.743	ENSSTOG00000011222	-	85	84.971	Ictidomys_tridecemlineatus
ENSPREG00000017567	rab13	99	74.752	ENSJJAG00000010575	Rab13	90	81.421	Jaculus_jaculus
ENSPREG00000017567	rab13	100	91.500	ENSKMAG00000001908	rab13	100	91.500	Kryptolebias_marmoratus
ENSPREG00000017567	rab13	100	93.500	ENSLBEG00000026779	rab13	100	93.500	Labrus_bergylta
ENSPREG00000017567	rab13	89	78.531	ENSLACG00000008103	-	99	78.531	Latimeria_chalumnae
ENSPREG00000017567	rab13	99	74.257	ENSMFAG00000041018	RAB13	90	80.328	Macaca_fascicularis
ENSPREG00000017567	rab13	99	74.257	ENSMNEG00000028951	-	90	80.328	Macaca_nemestrina
ENSPREG00000017567	rab13	99	74.257	ENSMLEG00000042247	-	90	80.328	Mandrillus_leucophaeus
ENSPREG00000017567	rab13	100	95.000	ENSMAMG00000014602	rab13	100	95.000	Mastacembelus_armatus
ENSPREG00000017567	rab13	99	75.248	ENSMAUG00000015713	Rab13	90	80.874	Mesocricetus_auratus
ENSPREG00000017567	rab13	99	74.627	ENSMICG00000010340	-	90	80.663	Microcebus_murinus
ENSPREG00000017567	rab13	99	75.743	ENSMOCG00000021448	Rab13	90	81.421	Microtus_ochrogaster
ENSPREG00000017567	rab13	99	76.617	ENSMODG00000017295	-	76	81.868	Monodelphis_domestica
ENSPREG00000017567	rab13	99	73.267	MGP_CAROLIEiJ_G0025227	Rab13	90	78.689	Mus_caroli
ENSPREG00000017567	rab13	99	72.330	ENSMUSG00000027935	Rab13	93	77.660	Mus_musculus
ENSPREG00000017567	rab13	100	72.772	MGP_PahariEiJ_G0026671	Rab13	86	82.081	Mus_pahari
ENSPREG00000017567	rab13	99	74.877	ENSNGAG00000010309	Rab13	91	80.328	Nannospalax_galili
ENSPREG00000017567	rab13	100	93.000	ENSNBRG00000004124	rab13	100	93.000	Neolamprologus_brichardi
ENSPREG00000017567	rab13	99	74.257	ENSNLEG00000028944	-	88	83.815	Nomascus_leucogenys
ENSPREG00000017567	rab13	99	76.238	ENSMEUG00000009667	-	90	81.319	Notamacropus_eugenii
ENSPREG00000017567	rab13	99	73.762	ENSODEG00000010443	-	91	78.804	Octodon_degus
ENSPREG00000017567	rab13	64	86.614	ENSODEG00000012634	-	100	86.614	Octodon_degus
ENSPREG00000017567	rab13	100	89.109	ENSONIG00000006340	rab13	89	96.089	Oreochromis_niloticus
ENSPREG00000017567	rab13	87	83.815	ENSOCUG00000006286	-	97	83.815	Oryctolagus_cuniculus
ENSPREG00000017567	rab13	100	92.000	ENSOMEG00000008210	rab13	100	92.000	Oryzias_melastigma
ENSPREG00000017567	rab13	99	73.500	ENSOGAG00000016969	-	91	79.235	Otolemur_garnettii
ENSPREG00000017567	rab13	99	74.257	ENSPPAG00000028435	-	90	80.328	Pan_paniscus
ENSPREG00000017567	rab13	99	73.762	ENSPPRG00000008865	-	85	82.659	Panthera_pardus
ENSPREG00000017567	rab13	99	74.257	ENSPTRG00000001370	RAB13	90	80.328	Pan_troglodytes
ENSPREG00000017567	rab13	99	74.257	ENSPANG00000004479	-	90	80.328	Papio_anubis
ENSPREG00000017567	rab13	100	91.000	ENSPMGG00000007680	rab13	100	91.000	Periophthalmus_magnuspinnatus
ENSPREG00000017567	rab13	54	91.667	ENSPEMG00000017353	-	86	86.957	Peromyscus_maniculatus_bairdii
ENSPREG00000017567	rab13	99	76.238	ENSPCIG00000029350	-	90	81.319	Phascolarctos_cinereus
ENSPREG00000017567	rab13	89	100.000	ENSPLAG00000005832	RAB13	95	100.000	Poecilia_latipinna
ENSPREG00000017567	rab13	99	74.257	ENSPPYG00000000790	-	90	80.328	Pongo_abelii
ENSPREG00000017567	rab13	99	75.124	ENSPCOG00000012189	-	90	81.215	Propithecus_coquereli
ENSPREG00000017567	rab13	99	74.627	ENSPVAG00000011095	-	91	79.781	Pteropus_vampyrus
ENSPREG00000017567	rab13	90	95.531	ENSPNAG00000004189	rab13	95	95.531	Pygocentrus_nattereri
ENSPREG00000017567	rab13	99	74.257	ENSRNOG00000016733	Rab13	90	79.235	Rattus_norvegicus
ENSPREG00000017567	rab13	99	74.257	ENSRBIG00000008552	-	90	80.328	Rhinopithecus_bieti
ENSPREG00000017567	rab13	99	74.257	ENSRROG00000036885	-	90	80.328	Rhinopithecus_roxellana
ENSPREG00000017567	rab13	99	74.627	ENSSBOG00000020342	-	91	80.328	Saimiri_boliviensis_boliviensis
ENSPREG00000017567	rab13	99	77.228	ENSSHAG00000011866	-	90	81.868	Sarcophilus_harrisii
ENSPREG00000017567	rab13	99	74.257	ENSSSCG00000006564	-	90	80.328	Sus_scrofa
ENSPREG00000017567	rab13	100	92.500	ENSTRUG00000024177	rab13	100	92.500	Takifugu_rubripes
ENSPREG00000017567	rab13	99	75.743	ENSTBEG00000012734	-	91	79.891	Tupaia_belangeri
ENSPREG00000017567	rab13	99	74.257	ENSTTRG00000011183	-	90	80.328	Tursiops_truncatus
ENSPREG00000017567	rab13	69	78.417	ENSXETG00000020729	rab13	87	78.417	Xenopus_tropicalis
ENSPREG00000017567	rab13	89	98.305	ENSXCOG00000019533	rab13	95	98.305	Xiphophorus_couchianus