EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000017713 (Gene tree)
Gene ID: 103477580
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 15207 bases
Position: chrLG16:2266932-2282138
Accession: 103477580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000026257	EST1	PF10374.9	5.3e-24	1	1
ENSPREP00000026231	EST1	PF10374.9	5.6e-24	1	1
ENSPREP00000026231	EST1_DNA_bind	PF10373.9	4.5e-42	1	1
ENSPREP00000026257	EST1_DNA_bind	PF10373.9	2.2e-33	1	1
ENSPREP00000026257	PIN_4	PF13638.6	8.9e-06	1	1
ENSPREP00000026231	PIN_4	PF13638.6	9.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000026525	-	3219	-	ENSPREP00000026257	1072 (aa)	-	-
ENSPRET00000026499	-	3342	XM_008430760	ENSPREP00000026231	1113 (aa)	XP_008428982	UPI0004A2D255

Gene Model

Click here to download ENSPREG00000017713's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000017713's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000017713	smg5	99	61.909	ENSG00000198952	SMG5	93	75.792	Homo_sapiens
ENSPREG00000017713	smg5	100	89.264	ENSAPOG00000019690	smg5	100	88.287	Acanthochromis_polyacanthus
ENSPREG00000017713	smg5	98	60.878	ENSAMEG00000014458	SMG5	91	77.363	Ailuropoda_melanoleuca
ENSPREG00000017713	smg5	100	82.527	ENSACIG00000001353	smg5	99	82.437	Amphilophus_citrinellus
ENSPREG00000017713	smg5	100	89.403	ENSAOCG00000019483	smg5	100	89.047	Amphiprion_ocellaris
ENSPREG00000017713	smg5	100	89.225	ENSAPEG00000022949	smg5	100	89.047	Amphiprion_percula
ENSPREG00000017713	smg5	100	86.833	ENSATEG00000005348	smg5	100	86.554	Anabas_testudineus
ENSPREG00000017713	smg5	98	62.816	ENSAPLG00000010263	SMG5	100	61.086	Anas_platyrhynchos
ENSPREG00000017713	smg5	99	62.097	ENSANAG00000032899	SMG5	93	69.425	Aotus_nancymaae
ENSPREG00000017713	smg5	100	87.922	ENSACLG00000009311	smg5	100	88.089	Astatotilapia_calliptera
ENSPREG00000017713	smg5	100	78.603	ENSAMXG00000024616	smg5	100	78.495	Astyanax_mexicanus
ENSPREG00000017713	smg5	99	62.007	ENSBTAG00000009435	SMG5	93	70.115	Bos_taurus
ENSPREG00000017713	smg5	87	50.608	ENSBTAG00000021747	-	85	50.608	Bos_taurus
ENSPREG00000017713	smg5	99	62.097	ENSCJAG00000005684	SMG5	93	69.425	Callithrix_jacchus
ENSPREG00000017713	smg5	99	61.241	ENSCAFG00000016839	SMG5	93	75.744	Canis_familiaris
ENSPREG00000017713	smg5	99	61.241	ENSCAFG00020006061	SMG5	93	75.744	Canis_lupus_dingo
ENSPREG00000017713	smg5	84	50.868	ENSCHIG00000006323	-	86	50.868	Capra_hircus
ENSPREG00000017713	smg5	99	62.007	ENSCHIG00000007709	SMG5	93	76.697	Capra_hircus
ENSPREG00000017713	smg5	99	62.007	ENSTSYG00000004099	SMG5	50	59.851	Carlito_syrichta
ENSPREG00000017713	smg5	97	46.857	ENSCAPG00000003631	SMG5	92	55.204	Cavia_aperea
ENSPREG00000017713	smg5	99	62.366	ENSCPOG00000015696	SMG5	93	75.909	Cavia_porcellus
ENSPREG00000017713	smg5	99	62.007	ENSCCAG00000027409	SMG5	93	69.425	Cebus_capucinus
ENSPREG00000017713	smg5	99	61.909	ENSCATG00000030539	SMG5	50	60.409	Cercocebus_atys
ENSPREG00000017713	smg5	99	62.097	ENSCLAG00000003983	SMG5	93	69.885	Chinchilla_lanigera
ENSPREG00000017713	smg5	99	61.909	ENSCSAG00000002120	SMG5	50	60.409	Chlorocebus_sabaeus
ENSPREG00000017713	smg5	51	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSPREG00000017713	smg5	77	38.060	ENSCING00000008706	-	83	38.060	Ciona_intestinalis
ENSPREG00000017713	smg5	99	59.144	ENSCANG00000029208	SMG5	93	69.195	Colobus_angolensis_palliatus
ENSPREG00000017713	smg5	99	62.410	ENSCGRG00001006336	Smg5	93	69.213	Cricetulus_griseus_chok1gshd
ENSPREG00000017713	smg5	98	62.249	ENSCGRG00000005111	Smg5	93	69.007	Cricetulus_griseus_crigri
ENSPREG00000017713	smg5	100	83.348	ENSCSEG00000014220	smg5	100	83.066	Cynoglossus_semilaevis
ENSPREG00000017713	smg5	100	76.344	ENSCVAG00000000529	smg5	99	75.269	Cyprinodon_variegatus
ENSPREG00000017713	smg5	100	78.222	ENSDARG00000041481	smg5	100	77.620	Danio_rerio
ENSPREG00000017713	smg5	88	78.836	ENSDNOG00000000051	SMG5	93	69.074	Dasypus_novemcinctus
ENSPREG00000017713	smg5	82	39.944	ENSDNOG00000039862	-	88	39.548	Dasypus_novemcinctus
ENSPREG00000017713	smg5	99	62.444	ENSDORG00000010382	Smg5	93	76.018	Dipodomys_ordii
ENSPREG00000017713	smg5	76	84.466	ENSETEG00000010336	SMG5	63	84.466	Echinops_telfairi
ENSPREG00000017713	smg5	79	53.695	ENSEBUG00000003739	smg5	88	53.766	Eptatretus_burgeri
ENSPREG00000017713	smg5	99	62.276	ENSEASG00005019122	SMG5	93	70.115	Equus_asinus_asinus
ENSPREG00000017713	smg5	99	62.298	ENSECAG00000001389	SMG5	93	70.814	Equus_caballus
ENSPREG00000017713	smg5	66	79.155	ENSEEUG00000012690	SMG5	74	78.249	Erinaceus_europaeus
ENSPREG00000017713	smg5	100	80.142	ENSELUG00000012585	smg5	100	78.919	Esox_lucius
ENSPREG00000017713	smg5	99	61.905	ENSFCAG00000011783	SMG5	93	75.000	Felis_catus
ENSPREG00000017713	smg5	60	61.640	ENSFALG00000001166	-	95	58.188	Ficedula_albicollis
ENSPREG00000017713	smg5	98	61.623	ENSFDAG00000017388	SMG5	93	70.244	Fukomys_damarensis
ENSPREG00000017713	smg5	98	82.755	ENSFHEG00000013939	smg5	94	94.286	Fundulus_heteroclitus
ENSPREG00000017713	smg5	100	76.754	ENSGMOG00000007310	smg5	100	77.105	Gadus_morhua
ENSPREG00000017713	smg5	99	63.661	ENSGALG00000029918	-	99	62.533	Gallus_gallus
ENSPREG00000017713	smg5	93	97.361	ENSGAFG00000021691	smg5	99	97.361	Gambusia_affinis
ENSPREG00000017713	smg5	100	84.677	ENSGACG00000013142	smg5	100	82.905	Gasterosteus_aculeatus
ENSPREG00000017713	smg5	99	61.731	ENSGGOG00000010932	SMG5	93	75.792	Gorilla_gorilla
ENSPREG00000017713	smg5	100	87.911	ENSHBUG00000008654	smg5	100	87.822	Haplochromis_burtoni
ENSPREG00000017713	smg5	99	61.573	ENSHGLG00000019152	SMG5	93	74.944	Heterocephalus_glaber_female
ENSPREG00000017713	smg5	91	61.713	ENSHGLG00100015948	SMG5	92	74.943	Heterocephalus_glaber_male
ENSPREG00000017713	smg5	93	66.547	ENSHCOG00000010229	smg5	93	82.651	Hippocampus_comes
ENSPREG00000017713	smg5	100	77.768	ENSIPUG00000006624	Smg5	100	77.224	Ictalurus_punctatus
ENSPREG00000017713	smg5	99	62.186	ENSSTOG00000001780	SMG5	93	75.395	Ictidomys_tridecemlineatus
ENSPREG00000017713	smg5	99	61.995	ENSJJAG00000022763	Smg5	50	60.781	Jaculus_jaculus
ENSPREG00000017713	smg5	100	89.947	ENSKMAG00000014586	smg5	100	90.125	Kryptolebias_marmoratus
ENSPREG00000017713	smg5	100	87.701	ENSLBEG00000002145	smg5	100	87.255	Labrus_bergylta
ENSPREG00000017713	smg5	99	57.067	ENSLACG00000010521	SMG5	99	57.511	Latimeria_chalumnae
ENSPREG00000017713	smg5	100	68.267	ENSLOCG00000008380	smg5	99	72.140	Lepisosteus_oculatus
ENSPREG00000017713	smg5	99	61.456	ENSLAFG00000006241	SMG5	93	75.626	Loxodonta_africana
ENSPREG00000017713	smg5	99	61.909	ENSMFAG00000045357	SMG5	50	60.409	Macaca_fascicularis
ENSPREG00000017713	smg5	92	78.824	ENSMMUG00000000090	SMG5	94	75.964	Macaca_mulatta
ENSPREG00000017713	smg5	99	61.820	ENSMNEG00000044425	SMG5	50	60.223	Macaca_nemestrina
ENSPREG00000017713	smg5	99	56.889	ENSMLEG00000041192	SMG5	93	66.516	Mandrillus_leucophaeus
ENSPREG00000017713	smg5	100	86.910	ENSMAMG00000010683	smg5	100	86.999	Mastacembelus_armatus
ENSPREG00000017713	smg5	68	74.864	ENSMZEG00005016543	smg5	100	74.422	Maylandia_zebra
ENSPREG00000017713	smg5	100	78.214	ENSMZEG00005015815	smg5	99	78.304	Maylandia_zebra
ENSPREG00000017713	smg5	99	62.087	ENSMAUG00000010381	Smg5	93	68.981	Mesocricetus_auratus
ENSPREG00000017713	smg5	99	61.905	ENSMICG00000002257	SMG5	93	70.139	Microcebus_murinus
ENSPREG00000017713	smg5	99	61.408	ENSMOCG00000016590	Smg5	50	60.409	Microtus_ochrogaster
ENSPREG00000017713	smg5	100	83.185	ENSMMOG00000017199	smg5	100	82.520	Mola_mola
ENSPREG00000017713	smg5	71	35.733	ENSMODG00000004511	-	79	35.733	Monodelphis_domestica
ENSPREG00000017713	smg5	88	60.993	ENSMODG00000016901	SMG5	90	69.195	Monodelphis_domestica
ENSPREG00000017713	smg5	74	33.735	ENSMODG00000010675	-	92	33.495	Monodelphis_domestica
ENSPREG00000017713	smg5	73	34.475	ENSMODG00000004532	-	89	34.018	Monodelphis_domestica
ENSPREG00000017713	smg5	71	35.580	ENSMODG00000004735	-	89	35.580	Monodelphis_domestica
ENSPREG00000017713	smg5	100	85.740	ENSMALG00000010375	smg5	100	85.561	Monopterus_albus
ENSPREG00000017713	smg5	99	63.106	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSPREG00000017713	smg5	99	63.040	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSPREG00000017713	smg5	99	62.500	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSPREG00000017713	smg5	99	62.950	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSPREG00000017713	smg5	94	60.114	ENSMPUG00000004546	SMG5	93	73.740	Mustela_putorius_furo
ENSPREG00000017713	smg5	99	62.455	ENSMLUG00000008518	SMG5	93	76.018	Myotis_lucifugus
ENSPREG00000017713	smg5	99	62.826	ENSNGAG00000020706	Smg5	93	69.535	Nannospalax_galili
ENSPREG00000017713	smg5	78	49.877	ENSNGAG00000012101	-	85	49.630	Nannospalax_galili
ENSPREG00000017713	smg5	97	75.092	ENSNBRG00000004332	smg5	98	75.253	Neolamprologus_brichardi
ENSPREG00000017713	smg5	99	62.366	ENSNLEG00000012439	SMG5	93	76.018	Nomascus_leucogenys
ENSPREG00000017713	smg5	99	61.022	ENSMEUG00000012834	SMG5	93	69.425	Notamacropus_eugenii
ENSPREG00000017713	smg5	99	62.545	ENSOPRG00000009152	SMG5	50	58.922	Ochotona_princeps
ENSPREG00000017713	smg5	99	61.594	ENSODEG00000012237	SMG5	93	76.072	Octodon_degus
ENSPREG00000017713	smg5	100	87.289	ENSONIG00000008632	smg5	100	87.378	Oreochromis_niloticus
ENSPREG00000017713	smg5	98	62.192	ENSOCUG00000012886	SMG5	93	70.048	Oryctolagus_cuniculus
ENSPREG00000017713	smg5	75	46.020	ENSOCUG00000023338	-	84	46.020	Oryctolagus_cuniculus
ENSPREG00000017713	smg5	100	85.089	ENSORLG00000016239	smg5	100	85.179	Oryzias_latipes
ENSPREG00000017713	smg5	100	85.179	ENSORLG00020013127	smg5	100	85.179	Oryzias_latipes_hni
ENSPREG00000017713	smg5	100	85.179	ENSORLG00015019014	smg5	100	85.446	Oryzias_latipes_hsok
ENSPREG00000017713	smg5	84	84.803	ENSOMEG00000021330	smg5	93	85.749	Oryzias_melastigma
ENSPREG00000017713	smg5	99	60.901	ENSOGAG00000004966	SMG5	93	69.676	Otolemur_garnettii
ENSPREG00000017713	smg5	85	51.090	ENSOARG00000011963	-	87	51.090	Ovis_aries
ENSPREG00000017713	smg5	99	61.918	ENSOARG00000005778	SMG5	93	76.697	Ovis_aries
ENSPREG00000017713	smg5	99	61.820	ENSPPAG00000011996	SMG5	93	75.566	Pan_paniscus
ENSPREG00000017713	smg5	98	61.644	ENSPPRG00000011901	SMG5	93	76.134	Panthera_pardus
ENSPREG00000017713	smg5	97	58.103	ENSPTIG00000007892	SMG5	92	73.206	Panthera_tigris_altaica
ENSPREG00000017713	smg5	86	78.371	ENSPTRG00000049282	-	93	75.566	Pan_troglodytes
ENSPREG00000017713	smg5	99	61.820	ENSPTRG00000023925	SMG5	93	75.566	Pan_troglodytes
ENSPREG00000017713	smg5	99	61.909	ENSPANG00000011201	SMG5	50	60.409	Papio_anubis
ENSPREG00000017713	smg5	100	76.434	ENSPKIG00000009402	smg5	100	75.717	Paramormyrops_kingsleyae
ENSPREG00000017713	smg5	100	72.316	ENSPMGG00000010465	smg5	100	71.365	Periophthalmus_magnuspinnatus
ENSPREG00000017713	smg5	99	62.050	ENSPEMG00000001819	Smg5	50	60.595	Peromyscus_maniculatus_bairdii
ENSPREG00000017713	smg5	86	62.654	ENSPMAG00000000410	smg5	91	62.830	Petromyzon_marinus
ENSPREG00000017713	smg5	99	61.296	ENSPCIG00000018938	SMG5	93	69.142	Phascolarctos_cinereus
ENSPREG00000017713	smg5	100	98.293	ENSPFOG00000010191	smg5	100	98.293	Poecilia_formosa
ENSPREG00000017713	smg5	100	98.473	ENSPLAG00000009332	smg5	100	98.473	Poecilia_latipinna
ENSPREG00000017713	smg5	100	98.383	ENSPMEG00000014105	smg5	100	98.383	Poecilia_mexicana
ENSPREG00000017713	smg5	99	61.909	ENSPPYG00000000723	SMG5	93	75.792	Pongo_abelii
ENSPREG00000017713	smg5	85	74.359	ENSPCAG00000008412	SMG5	65	78.333	Procavia_capensis
ENSPREG00000017713	smg5	99	62.196	ENSPCOG00000004741	SMG5	51	59.851	Propithecus_coquereli
ENSPREG00000017713	smg5	93	65.116	ENSPVAG00000016748	SMG5	93	63.122	Pteropus_vampyrus
ENSPREG00000017713	smg5	100	87.422	ENSPNYG00000013397	smg5	100	87.511	Pundamilia_nyererei
ENSPREG00000017713	smg5	100	79.267	ENSPNAG00000028363	smg5	100	78.712	Pygocentrus_nattereri
ENSPREG00000017713	smg5	99	62.893	ENSRNOG00000019590	Smg5	50	60.781	Rattus_norvegicus
ENSPREG00000017713	smg5	99	61.909	ENSRBIG00000027428	SMG5	93	69.425	Rhinopithecus_bieti
ENSPREG00000017713	smg5	99	61.820	ENSRROG00000030035	SMG5	93	69.425	Rhinopithecus_roxellana
ENSPREG00000017713	smg5	99	62.186	ENSSBOG00000033339	SMG5	93	69.655	Saimiri_boliviensis_boliviensis
ENSPREG00000017713	smg5	52	35.872	ENSSHAG00000000935	-	82	35.872	Sarcophilus_harrisii
ENSPREG00000017713	smg5	98	60.672	ENSSHAG00000014163	SMG5	93	69.324	Sarcophilus_harrisii
ENSPREG00000017713	smg5	71	41.076	ENSSHAG00000009572	-	80	40.831	Sarcophilus_harrisii
ENSPREG00000017713	smg5	70	35.821	ENSSHAG00000000561	-	89	35.821	Sarcophilus_harrisii
ENSPREG00000017713	smg5	100	76.732	ENSSFOG00015024175	smg5	100	76.068	Scleropages_formosus
ENSPREG00000017713	smg5	100	86.887	ENSSMAG00000013059	smg5	100	86.619	Scophthalmus_maximus
ENSPREG00000017713	smg5	100	88.053	ENSSDUG00000007122	smg5	100	86.903	Seriola_dumerili
ENSPREG00000017713	smg5	100	88.366	ENSSLDG00000011418	smg5	100	87.833	Seriola_lalandi_dorsalis
ENSPREG00000017713	smg5	91	55.183	ENSSARG00000012484	SMG5	92	61.959	Sorex_araneus
ENSPREG00000017713	smg5	100	89.539	ENSSPAG00000014266	smg5	100	89.096	Stegastes_partitus
ENSPREG00000017713	smg5	99	62.276	ENSSSCG00000006490	-	93	70.588	Sus_scrofa
ENSPREG00000017713	smg5	59	47.161	ENSSSCG00000039308	-	51	49.628	Sus_scrofa
ENSPREG00000017713	smg5	99	63.134	ENSTGUG00000003748	-	93	70.507	Taeniopygia_guttata
ENSPREG00000017713	smg5	100	79.167	ENSTRUG00000012580	smg5	100	78.863	Takifugu_rubripes
ENSPREG00000017713	smg5	100	79.435	ENSTNIG00000010303	smg5	100	78.691	Tetraodon_nigroviridis
ENSPREG00000017713	smg5	52	83.889	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSPREG00000017713	smg5	99	58.961	ENSTTRG00000001401	SMG5	93	63.908	Tursiops_truncatus
ENSPREG00000017713	smg5	99	61.206	ENSUAMG00000013721	SMG5	93	75.459	Ursus_americanus
ENSPREG00000017713	smg5	92	74.515	ENSUMAG00000018041	SMG5	95	73.210	Ursus_maritimus
ENSPREG00000017713	smg5	92	70.792	ENSVPAG00000009446	SMG5	93	66.429	Vicugna_pacos
ENSPREG00000017713	smg5	99	61.601	ENSVVUG00000005887	SMG5	91	77.488	Vulpes_vulpes
ENSPREG00000017713	smg5	79	52.643	ENSXETG00000033791	SMG5	99	51.354	Xenopus_tropicalis
ENSPREG00000017713	smg5	91	98.378	ENSXCOG00000004379	smg5	99	99.451	Xiphophorus_couchianus
ENSPREG00000017713	smg5	100	97.934	ENSXMAG00000013499	smg5	100	97.934	Xiphophorus_maculatus