EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000018042 (Gene tree)
Gene ID: 103479436
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 4334 bases
Position: chrLG17:14928529-14932862
Accession: 103479436
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000026709	RRM_1	PF00076.22	9.7e-26	1	1
ENSPREP00000026692	RRM_1	PF00076.22	1.2e-25	1	1
ENSPREP00000026681	RRM_1	PF00076.22	1.2e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000026971	-	1259	XM_008433848	ENSPREP00000026692	209 (aa)	XP_008432070	-
ENSPRET00000026988	-	561	XM_008433847	ENSPREP00000026709	186 (aa)	XP_008432069	UPI0004A4FA20
ENSPRET00000026960	-	4080	-	ENSPREP00000026681	212 (aa)	-	-

Gene Model

Click here to download ENSPREG00000018042's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000018042's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000018042	cirbpa	56	31.532	ENSPREG00000020685	srsf7a	54	35.135
ENSPREG00000018042	cirbpa	56	34.286	ENSPREG00000021643	ncbp2	59	37.500
ENSPREG00000018042	cirbpa	60	38.889	ENSPREG00000005877	-	73	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000018042	cirbpa	72	84.962	ENSAPOG00000004458	cirbpa	100	60.444	Acanthochromis_polyacanthus
ENSPREG00000018042	cirbpa	98	82.609	ENSACIG00000016116	cirbpa	99	85.326	Amphilophus_citrinellus
ENSPREG00000018042	cirbpa	98	75.806	ENSAOCG00000016212	cirbpa	99	74.737	Amphiprion_ocellaris
ENSPREG00000018042	cirbpa	98	73.797	ENSAPEG00000011989	cirbpa	99	74.332	Amphiprion_percula
ENSPREG00000018042	cirbpa	98	85.792	ENSATEG00000014985	cirbpa	99	82.222	Anabas_testudineus
ENSPREG00000018042	cirbpa	96	86.740	ENSACLG00000002094	-	99	86.188	Astatotilapia_calliptera
ENSPREG00000018042	cirbpa	98	54.106	ENSAMXG00000015612	cirbpb	84	55.665	Astyanax_mexicanus
ENSPREG00000018042	cirbpa	98	66.495	ENSCSEG00000014344	cirbpa	99	70.681	Cynoglossus_semilaevis
ENSPREG00000018042	cirbpa	98	84.865	ENSCVAG00000004853	cirbpa	99	87.363	Cyprinodon_variegatus
ENSPREG00000018042	cirbpa	97	58.470	ENSDARG00000103672	cirbpa	98	59.341	Danio_rerio
ENSPREG00000018042	cirbpa	98	78.495	ENSFHEG00000002580	cirbpa	100	80.978	Fundulus_heteroclitus
ENSPREG00000018042	cirbpa	97	57.653	ENSGMOG00000007179	cirbpb	98	52.709	Gadus_morhua
ENSPREG00000018042	cirbpa	100	97.872	ENSGAFG00000008654	cirbpa	100	97.872	Gambusia_affinis
ENSPREG00000018042	cirbpa	98	64.835	ENSGACG00000014978	-	99	63.736	Gasterosteus_aculeatus
ENSPREG00000018042	cirbpa	98	68.421	ENSGACG00000015206	cirbpa	98	72.043	Gasterosteus_aculeatus
ENSPREG00000018042	cirbpa	98	85.870	ENSHBUG00000022060	cirbpa	99	86.188	Haplochromis_burtoni
ENSPREG00000018042	cirbpa	98	70.312	ENSKMAG00000005905	cirbpa	99	74.586	Kryptolebias_marmoratus
ENSPREG00000018042	cirbpa	98	64.286	ENSLBEG00000000292	cirbpa	99	62.431	Labrus_bergylta
ENSPREG00000018042	cirbpa	98	84.066	ENSMAMG00000010168	cirbpa	99	84.066	Mastacembelus_armatus
ENSPREG00000018042	cirbpa	98	85.870	ENSMZEG00005025577	-	99	86.188	Maylandia_zebra
ENSPREG00000018042	cirbpa	98	84.066	ENSMALG00000020092	cirbpa	99	89.944	Monopterus_albus
ENSPREG00000018042	cirbpa	98	85.870	ENSNBRG00000019658	cirbpa	99	86.188	Neolamprologus_brichardi
ENSPREG00000018042	cirbpa	98	82.609	ENSONIG00000010169	cirbpa	99	85.326	Oreochromis_niloticus
ENSPREG00000018042	cirbpa	98	80.435	ENSORLG00000015433	cirbpa	99	80.978	Oryzias_latipes
ENSPREG00000018042	cirbpa	98	80.435	ENSORLG00020016909	cirbpa	99	80.978	Oryzias_latipes_hni
ENSPREG00000018042	cirbpa	98	80.435	ENSORLG00015016636	cirbpa	99	80.978	Oryzias_latipes_hsok
ENSPREG00000018042	cirbpa	98	84.153	ENSOMEG00000021469	cirbpa	72	86.111	Oryzias_melastigma
ENSPREG00000018042	cirbpa	99	71.795	ENSPMGG00000017342	cirbpa	100	70.854	Periophthalmus_magnuspinnatus
ENSPREG00000018042	cirbpa	97	94.536	ENSPFOG00000015653	cirbpa	100	98.361	Poecilia_formosa
ENSPREG00000018042	cirbpa	97	94.536	ENSPLAG00000011125	cirbpa	100	98.361	Poecilia_latipinna
ENSPREG00000018042	cirbpa	97	94.536	ENSPMEG00000013878	cirbpa	100	98.361	Poecilia_mexicana
ENSPREG00000018042	cirbpa	98	85.870	ENSPNYG00000007198	-	99	85.326	Pundamilia_nyererei
ENSPREG00000018042	cirbpa	98	55.610	ENSPNAG00000019997	cirbpb	99	56.219	Pygocentrus_nattereri
ENSPREG00000018042	cirbpa	98	58.289	ENSSFOG00015005346	cirbpb	99	66.667	Scleropages_formosus
ENSPREG00000018042	cirbpa	98	71.066	ENSSMAG00000002412	cirbpa	99	71.134	Scophthalmus_maximus
ENSPREG00000018042	cirbpa	98	69.780	ENSSDUG00000016099	cirbpa	99	68.394	Seriola_dumerili
ENSPREG00000018042	cirbpa	97	71.823	ENSSPAG00000023037	cirbpa	98	68.889	Stegastes_partitus
ENSPREG00000018042	cirbpa	98	71.429	ENSTRUG00000010187	cirbpa	99	72.067	Takifugu_rubripes
ENSPREG00000018042	cirbpa	98	75.956	ENSTNIG00000000450	cirbpa	99	77.049	Tetraodon_nigroviridis
ENSPREG00000018042	cirbpa	99	98.913	ENSXCOG00000008262	cirbpa	100	98.913	Xiphophorus_couchianus
ENSPREG00000018042	cirbpa	98	97.802	ENSXMAG00000019336	cirbpa	99	97.802	Xiphophorus_maculatus