EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000018052 (Gene tree)
Gene ID: 103481988
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 29418 bases
Position: chrLG2:22802883-22832300
Accession: 103481988
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000027865	Rif1_N	PF12231.8	5.6e-81	1	1
ENSPREP00000028021	Rif1_N	PF12231.8	1.1e-76	1	1
ENSPREP00000027202	Rif1_N	PF12231.8	3.6e-76	1	1
ENSPREP00000027151	Rif1_N	PF12231.8	3.7e-76	1	1
ENSPREP00000028410	Rif1_N	PF12231.8	3.9e-76	1	1
ENSPREP00000028438	Rif1_N	PF12231.8	3.3e-74	1	1
ENSPREP00000028342	Rif1_N	PF12231.8	3.6e-74	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000028749	-	6465	-	ENSPREP00000028438	2154 (aa)	-	-
ENSPRET00000028171	-	6972	-	ENSPREP00000027865	2323 (aa)	-	-
ENSPRET00000027492	-	6651	-	ENSPREP00000027202	2216 (aa)	-	-
ENSPRET00000028328	-	6471	XM_008437863	ENSPREP00000028021	2156 (aa)	XP_008436085	-
ENSPRET00000028722	-	6552	-	ENSPREP00000028410	2183 (aa)	-	-
ENSPRET00000027441	-	6732	-	ENSPREP00000027151	2243 (aa)	-	-
ENSPRET00000028654	-	6750	-	ENSPREP00000028342	2249 (aa)	-	-

Gene Model

Click here to download ENSPREG00000018052's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000018052's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000018052	rif1	65	54.133	ENSG00000080345	RIF1	92	56.394	Homo_sapiens
ENSPREG00000018052	rif1	94	72.381	ENSAPOG00000011073	rif1	96	65.361	Acanthochromis_polyacanthus
ENSPREG00000018052	rif1	76	54.669	ENSAMEG00000008461	RIF1	63	51.116	Ailuropoda_melanoleuca
ENSPREG00000018052	rif1	96	70.798	ENSACIG00000017765	rif1	100	70.868	Amphilophus_citrinellus
ENSPREG00000018052	rif1	92	73.279	ENSAOCG00000017231	rif1	95	66.938	Amphiprion_ocellaris
ENSPREG00000018052	rif1	96	76.209	ENSAPEG00000013228	rif1	100	76.209	Amphiprion_percula
ENSPREG00000018052	rif1	99	73.726	ENSATEG00000022887	rif1	97	73.726	Anabas_testudineus
ENSPREG00000018052	rif1	71	55.051	ENSAPLG00000007092	RIF1	62	63.830	Anas_platyrhynchos
ENSPREG00000018052	rif1	68	51.816	ENSACAG00000003714	RIF1	64	50.558	Anolis_carolinensis
ENSPREG00000018052	rif1	65	54.786	ENSANAG00000024840	RIF1	63	51.888	Aotus_nancymaae
ENSPREG00000018052	rif1	91	54.845	ENSAMXG00000010910	rif1	80	55.632	Astyanax_mexicanus
ENSPREG00000018052	rif1	62	55.462	ENSBTAG00000021020	RIF1	66	49.732	Bos_taurus
ENSPREG00000018052	rif1	65	54.265	ENSCJAG00000003138	RIF1	64	50.952	Callithrix_jacchus
ENSPREG00000018052	rif1	70	54.002	ENSCAFG00000005670	RIF1	65	50.311	Canis_familiaris
ENSPREG00000018052	rif1	69	54.002	ENSCAFG00020016401	RIF1	67	49.097	Canis_lupus_dingo
ENSPREG00000018052	rif1	75	49.084	ENSCHIG00000020327	RIF1	70	49.084	Capra_hircus
ENSPREG00000018052	rif1	65	52.377	ENSTSYG00000008861	RIF1	62	49.201	Carlito_syrichta
ENSPREG00000018052	rif1	54	42.056	ENSCAPG00000008957	RIF1	84	37.167	Cavia_aperea
ENSPREG00000018052	rif1	65	51.312	ENSCPOG00000037898	RIF1	67	46.854	Cavia_porcellus
ENSPREG00000018052	rif1	65	51.677	ENSCCAG00000024760	RIF1	62	49.476	Cebus_capucinus
ENSPREG00000018052	rif1	69	54.223	ENSCATG00000033353	RIF1	55	64.894	Cercocebus_atys
ENSPREG00000018052	rif1	63	53.025	ENSCLAG00000001517	RIF1	61	51.169	Chinchilla_lanigera
ENSPREG00000018052	rif1	69	54.405	ENSCSAG00000016089	RIF1	54	64.894	Chlorocebus_sabaeus
ENSPREG00000018052	rif1	69	49.333	ENSCHOG00000007187	RIF1	61	50.649	Choloepus_hoffmanni
ENSPREG00000018052	rif1	70	51.360	ENSCPBG00000025885	RIF1	74	51.360	Chrysemys_picta_bellii
ENSPREG00000018052	rif1	59	64.045	ENSCANG00000028962	RIF1	57	64.045	Colobus_angolensis_palliatus
ENSPREG00000018052	rif1	71	51.859	ENSCGRG00001024589	Rif1	68	48.653	Cricetulus_griseus_chok1gshd
ENSPREG00000018052	rif1	69	53.618	ENSCGRG00000010713	Rif1	68	49.281	Cricetulus_griseus_crigri
ENSPREG00000018052	rif1	96	64.128	ENSCSEG00000003945	rif1	99	64.128	Cynoglossus_semilaevis
ENSPREG00000018052	rif1	95	79.682	ENSCVAG00000022479	rif1	93	97.753	Cyprinodon_variegatus
ENSPREG00000018052	rif1	70	61.151	ENSDARG00000062650	rif1	67	66.807	Danio_rerio
ENSPREG00000018052	rif1	67	51.962	ENSDNOG00000011194	RIF1	53	64.894	Dasypus_novemcinctus
ENSPREG00000018052	rif1	61	53.540	ENSETEG00000012421	RIF1	59	55.111	Echinops_telfairi
ENSPREG00000018052	rif1	63	65.287	ENSEASG00005023434	RIF1	60	65.287	Equus_asinus_asinus
ENSPREG00000018052	rif1	67	54.710	ENSECAG00000012679	RIF1	65	51.379	Equus_caballus
ENSPREG00000018052	rif1	67	68.633	ENSELUG00000006826	rif1	60	67.083	Esox_lucius
ENSPREG00000018052	rif1	69	53.936	ENSFCAG00000029742	RIF1	66	50.546	Felis_catus
ENSPREG00000018052	rif1	57	53.271	ENSFALG00000013874	RIF1	66	55.851	Ficedula_albicollis
ENSPREG00000018052	rif1	69	52.348	ENSFDAG00000006538	RIF1	64	50.711	Fukomys_damarensis
ENSPREG00000018052	rif1	99	77.795	ENSFHEG00000013721	rif1	99	76.141	Fundulus_heteroclitus
ENSPREG00000018052	rif1	69	60.916	ENSGMOG00000003517	rif1	99	60.714	Gadus_morhua
ENSPREG00000018052	rif1	62	55.452	ENSGALG00000012484	RIF1	57	62.766	Gallus_gallus
ENSPREG00000018052	rif1	96	92.047	ENSGAFG00000017196	rif1	99	92.047	Gambusia_affinis
ENSPREG00000018052	rif1	82	83.146	ENSGACG00000008579	rif1	83	73.478	Gasterosteus_aculeatus
ENSPREG00000018052	rif1	72	52.684	ENSGAGG00000012595	RIF1	68	62.766	Gopherus_agassizii
ENSPREG00000018052	rif1	58	58.237	ENSGGOG00000040178	RIF1	57	58.866	Gorilla_gorilla
ENSPREG00000018052	rif1	96	77.533	ENSHBUG00000007125	rif1	91	77.533	Haplochromis_burtoni
ENSPREG00000018052	rif1	59	53.986	ENSHGLG00100009807	RIF1	62	49.253	Heterocephalus_glaber_male
ENSPREG00000018052	rif1	99	63.666	ENSHCOG00000015943	rif1	85	63.756	Hippocampus_comes
ENSPREG00000018052	rif1	72	63.061	ENSIPUG00000021703	rif1	75	57.687	Ictalurus_punctatus
ENSPREG00000018052	rif1	68	54.775	ENSSTOG00000020712	RIF1	66	51.817	Ictidomys_tridecemlineatus
ENSPREG00000018052	rif1	66	51.467	ENSJJAG00000023000	Rif1	56	63.830	Jaculus_jaculus
ENSPREG00000018052	rif1	97	78.758	ENSKMAG00000002852	rif1	90	78.938	Kryptolebias_marmoratus
ENSPREG00000018052	rif1	94	73.397	ENSLBEG00000023196	rif1	86	65.852	Labrus_bergylta
ENSPREG00000018052	rif1	83	53.864	ENSLACG00000005425	RIF1	75	53.864	Latimeria_chalumnae
ENSPREG00000018052	rif1	66	63.078	ENSLOCG00000002657	rif1	83	57.231	Lepisosteus_oculatus
ENSPREG00000018052	rif1	69	54.348	ENSLAFG00000009796	RIF1	66	51.102	Loxodonta_africana
ENSPREG00000018052	rif1	69	54.314	ENSMFAG00000032233	RIF1	55	64.894	Macaca_fascicularis
ENSPREG00000018052	rif1	69	54.314	ENSMMUG00000008611	RIF1	55	64.894	Macaca_mulatta
ENSPREG00000018052	rif1	69	54.314	ENSMNEG00000031616	RIF1	55	64.894	Macaca_nemestrina
ENSPREG00000018052	rif1	69	54.223	ENSMLEG00000042945	RIF1	55	64.894	Mandrillus_leucophaeus
ENSPREG00000018052	rif1	99	57.211	ENSMAMG00000001745	rif1	73	72.378	Mastacembelus_armatus
ENSPREG00000018052	rif1	99	71.728	ENSMZEG00005020920	rif1	99	70.120	Maylandia_zebra
ENSPREG00000018052	rif1	69	54.562	ENSMGAG00000012732	RIF1	64	54.562	Meleagris_gallopavo
ENSPREG00000018052	rif1	67	64.286	ENSMAUG00000013158	Rif1	63	63.889	Mesocricetus_auratus
ENSPREG00000018052	rif1	72	54.809	ENSMICG00000046127	RIF1	66	50.708	Microcebus_murinus
ENSPREG00000018052	rif1	69	48.201	ENSMOCG00000009381	Rif1	65	48.312	Microtus_ochrogaster
ENSPREG00000018052	rif1	99	72.966	ENSMMOG00000006519	rif1	96	72.966	Mola_mola
ENSPREG00000018052	rif1	66	54.185	ENSMODG00000003703	RIF1	61	53.596	Monodelphis_domestica
ENSPREG00000018052	rif1	99	75.519	ENSMALG00000016759	rif1	99	63.462	Monopterus_albus
ENSPREG00000018052	rif1	65	53.490	MGP_CAROLIEiJ_G0023555	Rif1	65	50.549	Mus_caroli
ENSPREG00000018052	rif1	65	53.584	ENSMUSG00000036202	Rif1	65	50.507	Mus_musculus
ENSPREG00000018052	rif1	65	50.000	MGP_PahariEiJ_G0025006	Rif1	63	47.520	Mus_pahari
ENSPREG00000018052	rif1	65	54.234	MGP_SPRETEiJ_G0024476	Rif1	65	50.432	Mus_spretus
ENSPREG00000018052	rif1	66	53.901	ENSMPUG00000000371	RIF1	63	50.912	Mustela_putorius_furo
ENSPREG00000018052	rif1	54	51.583	ENSMLUG00000003376	RIF1	60	47.271	Myotis_lucifugus
ENSPREG00000018052	rif1	68	54.595	ENSNGAG00000009268	Rif1	57	61.798	Nannospalax_galili
ENSPREG00000018052	rif1	99	59.264	ENSNBRG00000014257	rif1	97	65.860	Neolamprologus_brichardi
ENSPREG00000018052	rif1	65	53.597	ENSNLEG00000010955	RIF1	64	50.117	Nomascus_leucogenys
ENSPREG00000018052	rif1	71	49.955	ENSODEG00000003950	RIF1	69	47.533	Octodon_degus
ENSPREG00000018052	rif1	99	60.260	ENSONIG00000013657	rif1	96	74.247	Oreochromis_niloticus
ENSPREG00000018052	rif1	60	55.419	ENSOANG00000006078	-	55	55.860	Ornithorhynchus_anatinus
ENSPREG00000018052	rif1	66	53.695	ENSOCUG00000017435	RIF1	64	49.335	Oryctolagus_cuniculus
ENSPREG00000018052	rif1	99	64.604	ENSORLG00020001302	rif1	90	73.619	Oryzias_latipes_hni
ENSPREG00000018052	rif1	95	73.886	ENSORLG00015000009	rif1	90	73.886	Oryzias_latipes_hsok
ENSPREG00000018052	rif1	99	56.092	ENSOMEG00000021513	rif1	83	70.921	Oryzias_melastigma
ENSPREG00000018052	rif1	67	54.686	ENSOGAG00000006141	RIF1	54	61.702	Otolemur_garnettii
ENSPREG00000018052	rif1	75	49.466	ENSOARG00000008930	RIF1	71	49.466	Ovis_aries
ENSPREG00000018052	rif1	65	54.027	ENSPPAG00000023754	RIF1	55	64.894	Pan_paniscus
ENSPREG00000018052	rif1	68	54.356	ENSPPRG00000003618	RIF1	66	50.156	Panthera_pardus
ENSPREG00000018052	rif1	68	54.356	ENSPTIG00000020652	RIF1	66	50.156	Panthera_tigris_altaica
ENSPREG00000018052	rif1	65	54.223	ENSPTRG00000012534	RIF1	55	64.894	Pan_troglodytes
ENSPREG00000018052	rif1	69	54.299	ENSPANG00000008525	RIF1	55	64.894	Papio_anubis
ENSPREG00000018052	rif1	69	60.352	ENSPKIG00000004267	rif1	65	73.034	Paramormyrops_kingsleyae
ENSPREG00000018052	rif1	79	61.659	ENSPMGG00000016141	rif1	74	78.495	Periophthalmus_magnuspinnatus
ENSPREG00000018052	rif1	65	53.676	ENSPEMG00000000446	Rif1	65	50.000	Peromyscus_maniculatus_bairdii
ENSPREG00000018052	rif1	66	54.821	ENSPCIG00000009185	RIF1	62	55.702	Phascolarctos_cinereus
ENSPREG00000018052	rif1	92	91.861	ENSPFOG00000000554	-	100	91.861	Poecilia_formosa
ENSPREG00000018052	rif1	100	92.188	ENSPFOG00000017804	rif1	100	92.188	Poecilia_formosa
ENSPREG00000018052	rif1	100	90.226	ENSPLAG00000017945	rif1	100	90.269	Poecilia_latipinna
ENSPREG00000018052	rif1	89	91.757	ENSPMEG00000006897	-	96	98.077	Poecilia_mexicana
ENSPREG00000018052	rif1	65	54.405	ENSPPYG00000012846	RIF1	55	64.894	Pongo_abelii
ENSPREG00000018052	rif1	64	54.777	ENSPCOG00000027888	RIF1	63	51.354	Propithecus_coquereli
ENSPREG00000018052	rif1	57	60.123	ENSPVAG00000014276	RIF1	57	60.123	Pteropus_vampyrus
ENSPREG00000018052	rif1	99	72.422	ENSPNYG00000012940	rif1	96	72.422	Pundamilia_nyererei
ENSPREG00000018052	rif1	79	57.923	ENSPNAG00000016685	rif1	77	58.311	Pygocentrus_nattereri
ENSPREG00000018052	rif1	65	51.161	ENSRNOG00000054901	Rif1	65	48.284	Rattus_norvegicus
ENSPREG00000018052	rif1	69	53.406	ENSRBIG00000003704	RIF1	54	64.894	Rhinopithecus_bieti
ENSPREG00000018052	rif1	69	54.314	ENSRROG00000028206	RIF1	55	64.894	Rhinopithecus_roxellana
ENSPREG00000018052	rif1	62	57.500	ENSSBOG00000029530	RIF1	63	55.000	Saimiri_boliviensis_boliviensis
ENSPREG00000018052	rif1	72	53.646	ENSSHAG00000018552	RIF1	60	56.881	Sarcophilus_harrisii
ENSPREG00000018052	rif1	67	62.733	ENSSFOG00015021539	rif1	80	58.203	Scleropages_formosus
ENSPREG00000018052	rif1	91	77.637	ENSSMAG00000011704	rif1	90	77.637	Scophthalmus_maximus
ENSPREG00000018052	rif1	94	69.979	ENSSDUG00000015632	rif1	99	69.979	Seriola_dumerili
ENSPREG00000018052	rif1	99	73.692	ENSSLDG00000019531	rif1	96	73.692	Seriola_lalandi_dorsalis
ENSPREG00000018052	rif1	69	50.798	ENSSPUG00000003062	RIF1	68	51.050	Sphenodon_punctatus
ENSPREG00000018052	rif1	68	74.696	ENSSPAG00000018359	rif1	100	73.242	Stegastes_partitus
ENSPREG00000018052	rif1	66	53.860	ENSSSCG00000016395	RIF1	64	51.176	Sus_scrofa
ENSPREG00000018052	rif1	50	55.375	ENSTGUG00000016761	RIF1	100	55.258	Taeniopygia_guttata
ENSPREG00000018052	rif1	96	75.339	ENSTRUG00000015808	rif1	89	75.339	Takifugu_rubripes
ENSPREG00000018052	rif1	99	65.849	ENSTNIG00000011538	rif1	89	73.984	Tetraodon_nigroviridis
ENSPREG00000018052	rif1	59	53.673	ENSTBEG00000016082	RIF1	55	53.673	Tupaia_belangeri
ENSPREG00000018052	rif1	66	53.887	ENSTTRG00000011190	RIF1	63	50.827	Tursiops_truncatus
ENSPREG00000018052	rif1	55	52.656	ENSUAMG00000026385	RIF1	59	49.102	Ursus_americanus
ENSPREG00000018052	rif1	65	53.993	ENSUMAG00000000337	RIF1	54	62.766	Ursus_maritimus
ENSPREG00000018052	rif1	71	52.424	ENSVPAG00000002162	RIF1	60	52.513	Vicugna_pacos
ENSPREG00000018052	rif1	78	52.437	ENSVVUG00000011293	RIF1	67	50.469	Vulpes_vulpes
ENSPREG00000018052	rif1	64	51.178	ENSXETG00000004530	rif1	65	57.789	Xenopus_tropicalis
ENSPREG00000018052	rif1	100	86.428	ENSXMAG00000000506	rif1	100	86.446	Xiphophorus_maculatus