EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000018091 (Gene tree)
Gene ID: 103458307
Gene Symbol: srsf5a
Alias: -
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 6943 bases
Position: chrLG22:9911365-9918307
Accession: 103458307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000026773	RRM_1	PF00076.22	6.3e-32	1	2
ENSPREP00000026773	RRM_1	PF00076.22	6.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000027052	-	4300	XM_008398974	ENSPREP00000026773	317 (aa)	XP_008397196	UPI0004A4F563

Gene Model

Click here to download ENSPREG00000018091's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG
pret05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000018091's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000018091	srsf5a	57	39.572	ENSPREG00000009667	srsf1a	66	41.304
ENSPREG00000018091	srsf5a	57	39.894	ENSPREG00000013165	srsf9	63	38.830
ENSPREG00000018091	srsf5a	92	52.189	ENSPREG00000010381	srsf5b	61	67.016
ENSPREG00000018091	srsf5a	66	41.014	ENSPREG00000016792	-	79	41.589

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000018091	srsf5a	100	67.802	ENSAPOG00000017395	srsf5a	80	78.125	Acanthochromis_polyacanthus
ENSPREG00000018091	srsf5a	85	69.259	ENSACIG00000011892	srsf5a	98	80.142	Amphilophus_citrinellus
ENSPREG00000018091	srsf5a	79	68.800	ENSAOCG00000014967	srsf5a	82	79.297	Amphiprion_ocellaris
ENSPREG00000018091	srsf5a	79	68.800	ENSAPEG00000009297	srsf5a	82	79.297	Amphiprion_percula
ENSPREG00000018091	srsf5a	100	72.555	ENSATEG00000000198	srsf5a	84	80.859	Anabas_testudineus
ENSPREG00000018091	srsf5a	61	70.103	ENSAPLG00000002469	-	70	69.072	Anas_platyrhynchos
ENSPREG00000018091	srsf5a	61	71.875	ENSACAG00000029015	-	68	69.792	Anolis_carolinensis
ENSPREG00000018091	srsf5a	79	83.200	ENSACLG00000027166	srsf5a	82	83.984	Astatotilapia_calliptera
ENSPREG00000018091	srsf5a	61	77.157	ENSAMXG00000030476	srsf5a	91	74.806	Astyanax_mexicanus
ENSPREG00000018091	srsf5a	61	72.539	ENSCPBG00000021518	-	70	71.503	Chrysemys_picta_bellii
ENSPREG00000018091	srsf5a	61	59.694	ENSCSAVG00000011376	-	78	59.694	Ciona_savignyi
ENSPREG00000018091	srsf5a	80	83.465	ENSCSEG00000008109	srsf5a	79	83.268	Cynoglossus_semilaevis
ENSPREG00000018091	srsf5a	79	94.821	ENSCVAG00000016982	srsf5a	98	96.296	Cyprinodon_variegatus
ENSPREG00000018091	srsf5a	62	78.571	ENSDARG00000029818	srsf5a	100	74.468	Danio_rerio
ENSPREG00000018091	srsf5a	79	64.504	ENSELUG00000020439	srsf5a	81	65.098	Esox_lucius
ENSPREG00000018091	srsf5a	66	62.185	ENSFALG00000005098	-	64	69.792	Ficedula_albicollis
ENSPREG00000018091	srsf5a	99	84.986	ENSFHEG00000003955	srsf5a	97	91.034	Fundulus_heteroclitus
ENSPREG00000018091	srsf5a	61	79.167	ENSGMOG00000000869	srsf5a	94	78.125	Gadus_morhua
ENSPREG00000018091	srsf5a	66	69.712	ENSGALG00000033259	SRSF5A	63	69.271	Gallus_gallus
ENSPREG00000018091	srsf5a	93	78.457	ENSGAFG00000018237	srsf5a	94	78.135	Gambusia_affinis
ENSPREG00000018091	srsf5a	61	81.771	ENSGACG00000011761	srsf5a	70	81.771	Gasterosteus_aculeatus
ENSPREG00000018091	srsf5a	61	72.539	ENSGAGG00000007312	-	70	71.503	Gopherus_agassizii
ENSPREG00000018091	srsf5a	79	82.800	ENSHBUG00000014048	srsf5a	82	83.203	Haplochromis_burtoni
ENSPREG00000018091	srsf5a	61	83.333	ENSHCOG00000017557	srsf5a	62	83.333	Hippocampus_comes
ENSPREG00000018091	srsf5a	61	80.208	ENSIPUG00000003439	srsf5a	69	80.208	Ictalurus_punctatus
ENSPREG00000018091	srsf5a	61	81.771	ENSKMAG00000014937	srsf5a	91	71.975	Kryptolebias_marmoratus
ENSPREG00000018091	srsf5a	61	85.714	ENSLBEG00000017153	srsf5a	74	86.224	Labrus_bergylta
ENSPREG00000018091	srsf5a	61	74.479	ENSLACG00000017874	-	70	74.479	Latimeria_chalumnae
ENSPREG00000018091	srsf5a	61	76.650	ENSLOCG00000014075	srsf5a	96	66.346	Lepisosteus_oculatus
ENSPREG00000018091	srsf5a	80	67.194	ENSMAMG00000000192	srsf5a	92	73.038	Mastacembelus_armatus
ENSPREG00000018091	srsf5a	79	82.800	ENSMZEG00005010485	srsf5a	82	83.203	Maylandia_zebra
ENSPREG00000018091	srsf5a	64	68.780	ENSMGAG00000011888	-	96	68.966	Meleagris_gallopavo
ENSPREG00000018091	srsf5a	61	82.812	ENSMMOG00000009793	srsf5a	90	74.403	Mola_mola
ENSPREG00000018091	srsf5a	79	65.200	ENSMALG00000021194	srsf5a	90	68.814	Monopterus_albus
ENSPREG00000018091	srsf5a	79	82.400	ENSNBRG00000000771	srsf5a	82	82.812	Neolamprologus_brichardi
ENSPREG00000018091	srsf5a	79	82.400	ENSONIG00000019583	srsf5a	82	82.812	Oreochromis_niloticus
ENSPREG00000018091	srsf5a	93	73.203	ENSORLG00000009268	srsf5a	85	80.469	Oryzias_latipes
ENSPREG00000018091	srsf5a	93	73.203	ENSORLG00020003281	srsf5	85	80.469	Oryzias_latipes_hni
ENSPREG00000018091	srsf5a	93	73.203	ENSORLG00015023075	srsf5	85	80.469	Oryzias_latipes_hsok
ENSPREG00000018091	srsf5a	79	81.600	ENSOMEG00000000628	srsf5a	85	80.859	Oryzias_melastigma
ENSPREG00000018091	srsf5a	61	77.273	ENSPKIG00000002054	srsf5a	68	79.167	Paramormyrops_kingsleyae
ENSPREG00000018091	srsf5a	78	67.611	ENSPSIG00000008238	-	69	68.394	Pelodiscus_sinensis
ENSPREG00000018091	srsf5a	81	61.328	ENSPMGG00000020125	srsf5a	78	59.559	Periophthalmus_magnuspinnatus
ENSPREG00000018091	srsf5a	100	97.508	ENSPFOG00000022993	srsf5a	100	97.508	Poecilia_formosa
ENSPREG00000018091	srsf5a	99	97.500	ENSPLAG00000005508	srsf5a	99	97.500	Poecilia_latipinna
ENSPREG00000018091	srsf5a	100	98.131	ENSPMEG00000016339	srsf5a	100	98.131	Poecilia_mexicana
ENSPREG00000018091	srsf5a	79	82.800	ENSPNYG00000021245	srsf5a	82	83.203	Pundamilia_nyererei
ENSPREG00000018091	srsf5a	61	78.646	ENSPNAG00000021333	srsf5a	66	78.646	Pygocentrus_nattereri
ENSPREG00000018091	srsf5a	79	75.676	ENSSFOG00015008377	srsf5	66	79.167	Scleropages_formosus
ENSPREG00000018091	srsf5a	79	79.070	ENSSMAG00000010899	srsf5a	66	86.000	Scophthalmus_maximus
ENSPREG00000018091	srsf5a	80	66.403	ENSSDUG00000006103	srsf5a	90	75.427	Seriola_dumerili
ENSPREG00000018091	srsf5a	80	66.798	ENSSLDG00000004146	srsf5a	90	75.768	Seriola_lalandi_dorsalis
ENSPREG00000018091	srsf5a	61	68.229	ENSSPUG00000002052	-	68	66.667	Sphenodon_punctatus
ENSPREG00000018091	srsf5a	79	78.400	ENSSPAG00000002821	srsf5a	82	77.734	Stegastes_partitus
ENSPREG00000018091	srsf5a	79	70.800	ENSTRUG00000022908	srsf5a	83	80.469	Takifugu_rubripes
ENSPREG00000018091	srsf5a	61	71.144	ENSXETG00000017937	srsf5a	72	75.130	Xenopus_tropicalis
ENSPREG00000018091	srsf5a	100	81.818	ENSXCOG00000015338	srsf5a	100	92.476	Xiphophorus_couchianus
ENSPREG00000018091	srsf5a	100	97.484	ENSXMAG00000012823	srsf5a	100	97.484	Xiphophorus_maculatus