EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000018102 (Gene tree)
Gene ID: 103478787
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 10916 bases
Position: chrLG16:30999078-31009993
Accession: 103478787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000026797	RRM_1	PF00076.22	7.5e-18	1	1
ENSPREP00000026806	RRM_1	PF00076.22	8.2e-18	1	1
ENSPREP00000026783	RRM_1	PF00076.22	8.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000027076	-	5729	-	ENSPREP00000026797	374 (aa)	-	-
ENSPRET00000027062	-	5801	XM_008432839	ENSPREP00000026783	398 (aa)	XP_008431061	UPI0004A4488A
ENSPRET00000027085	-	5902	-	ENSPREP00000026806	393 (aa)	-	-

Gene Model

Click here to download ENSPREG00000018102's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000018102's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000018102	rbm42	100	80.825	ENSAPOG00000015109	rbm42	100	79.854	Acanthochromis_polyacanthus
ENSPREG00000018102	rbm42	100	77.970	ENSACIG00000010771	rbm42	100	76.238	Amphilophus_citrinellus
ENSPREG00000018102	rbm42	100	81.796	ENSAOCG00000008873	rbm42	100	80.097	Amphiprion_ocellaris
ENSPREG00000018102	rbm42	100	81.796	ENSAPEG00000012051	rbm42	99	80.097	Amphiprion_percula
ENSPREG00000018102	rbm42	100	79.853	ENSATEG00000000536	rbm42	100	77.887	Anabas_testudineus
ENSPREG00000018102	rbm42	100	80.976	ENSACLG00000004988	rbm42	100	81.127	Astatotilapia_calliptera
ENSPREG00000018102	rbm42	100	71.053	ENSAMXG00000016545	rbm42	100	72.680	Astyanax_mexicanus
ENSPREG00000018102	rbm42	97	77.556	ENSCSEG00000010248	rbm42	100	76.060	Cynoglossus_semilaevis
ENSPREG00000018102	rbm42	100	87.990	ENSCVAG00000015589	rbm42	100	88.725	Cyprinodon_variegatus
ENSPREG00000018102	rbm42	100	66.033	ENSDARG00000039910	rbm42	100	69.268	Danio_rerio
ENSPREG00000018102	rbm42	97	36.164	FBgn0037342	CG2931	93	32.976	Drosophila_melanogaster
ENSPREG00000018102	rbm42	100	68.794	ENSELUG00000022403	rbm42	100	68.884	Esox_lucius
ENSPREG00000018102	rbm42	70	87.687	ENSFHEG00000006764	rbm42	89	89.850	Fundulus_heteroclitus
ENSPREG00000018102	rbm42	100	68.627	ENSGMOG00000012660	rbm42	100	69.438	Gadus_morhua
ENSPREG00000018102	rbm42	80	96.393	ENSGAFG00000009059	rbm42	100	98.371	Gambusia_affinis
ENSPREG00000018102	rbm42	100	75.669	ENSGACG00000004170	rbm42	100	73.415	Gasterosteus_aculeatus
ENSPREG00000018102	rbm42	100	80.732	ENSHBUG00000011141	rbm42	100	80.882	Haplochromis_burtoni
ENSPREG00000018102	rbm42	100	77.586	ENSHCOG00000021214	rbm42	100	77.586	Hippocampus_comes
ENSPREG00000018102	rbm42	100	70.952	ENSIPUG00000022365	rbm42	99	69.928	Ictalurus_punctatus
ENSPREG00000018102	rbm42	91	81.030	ENSKMAG00000015287	rbm42	99	78.862	Kryptolebias_marmoratus
ENSPREG00000018102	rbm42	100	76.942	ENSLBEG00000017547	rbm42	100	75.669	Labrus_bergylta
ENSPREG00000018102	rbm42	87	78.223	ENSLBEG00000004578	-	96	75.862	Labrus_bergylta
ENSPREG00000018102	rbm42	100	67.217	ENSLOCG00000003368	rbm42	100	64.235	Lepisosteus_oculatus
ENSPREG00000018102	rbm42	100	78.240	ENSMAMG00000006708	rbm42	100	79.462	Mastacembelus_armatus
ENSPREG00000018102	rbm42	100	80.976	ENSMZEG00005025234	rbm42	100	81.127	Maylandia_zebra
ENSPREG00000018102	rbm42	93	81.127	ENSMALG00000015720	rbm42	100	79.301	Monopterus_albus
ENSPREG00000018102	rbm42	100	81.356	ENSONIG00000008029	rbm42	100	79.177	Oreochromis_niloticus
ENSPREG00000018102	rbm42	100	61.667	ENSORLG00020022507	rbm42	100	61.905	Oryzias_latipes_hni
ENSPREG00000018102	rbm42	100	78.922	ENSORLG00015000659	rbm42	100	78.922	Oryzias_latipes_hsok
ENSPREG00000018102	rbm42	68	79.608	ENSOMEG00000014332	rbm42	94	80.392	Oryzias_melastigma
ENSPREG00000018102	rbm42	100	71.292	ENSPKIG00000015165	rbm42	100	69.784	Paramormyrops_kingsleyae
ENSPREG00000018102	rbm42	92	68.254	ENSPMGG00000003569	rbm42	100	98.571	Periophthalmus_magnuspinnatus
ENSPREG00000018102	rbm42	60	52.361	ENSPMAG00000008633	rbm42	100	47.409	Petromyzon_marinus
ENSPREG00000018102	rbm42	100	99.749	ENSPFOG00000007701	rbm42	100	99.749	Poecilia_formosa
ENSPREG00000018102	rbm42	100	99.497	ENSPLAG00000009405	rbm42	100	99.497	Poecilia_latipinna
ENSPREG00000018102	rbm42	100	99.497	ENSPMEG00000010375	rbm42	100	99.497	Poecilia_mexicana
ENSPREG00000018102	rbm42	100	80.685	ENSPNYG00000014460	rbm42	100	80.835	Pundamilia_nyererei
ENSPREG00000018102	rbm42	100	67.356	ENSPNAG00000009961	rbm42	100	69.524	Pygocentrus_nattereri
ENSPREG00000018102	rbm42	100	71.090	ENSSFOG00015019227	rbm42	100	69.668	Scleropages_formosus
ENSPREG00000018102	rbm42	100	77.073	ENSSMAG00000011935	rbm42	100	74.878	Scophthalmus_maximus
ENSPREG00000018102	rbm42	100	81.418	ENSSDUG00000004033	rbm42	100	79.707	Seriola_dumerili
ENSPREG00000018102	rbm42	100	75.196	ENSSLDG00000009918	rbm42	100	83.529	Seriola_lalandi_dorsalis
ENSPREG00000018102	rbm42	100	81.463	ENSSPAG00000019871	rbm42	100	80.097	Stegastes_partitus
ENSPREG00000018102	rbm42	100	73.775	ENSTRUG00000024586	-	76	71.951	Takifugu_rubripes
ENSPREG00000018102	rbm42	99	63.265	ENSTNIG00000011669	rbm42	100	63.182	Tetraodon_nigroviridis
ENSPREG00000018102	rbm42	100	59.005	ENSXETG00000017599	rbm42	100	57.957	Xenopus_tropicalis
ENSPREG00000018102	rbm42	100	97.756	ENSXMAG00000012827	rbm42	100	97.756	Xiphophorus_maculatus