EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000018166 (Gene tree)
Gene ID: 103468471
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 6435 bases
Position: chrLG8:8670909-8677343
Accession: 103468471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000026877	zf-CCCH	PF00642.24	8.3e-22	1	2
ENSPREP00000026877	zf-CCCH	PF00642.24	8.3e-22	2	2
ENSPREP00000026877	zf-CCHC	PF00098.23	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000027157	-	3958	XM_008415580	ENSPREP00000026877	262 (aa)	XP_008413802	UPI0004A334D7

Gene Model

Click here to download ENSPREG00000018166's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000018166's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000018166	cpsf4	100	79.182	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSPREG00000018166	cpsf4	66	80.791	ENSAPOG00000004921	cpsf4	100	80.791	Acanthochromis_polyacanthus
ENSPREG00000018166	cpsf4	100	78.889	ENSAMEG00000006252	CPSF4	100	82.222	Ailuropoda_melanoleuca
ENSPREG00000018166	cpsf4	100	82.576	ENSACIG00000009248	cpsf4	100	83.712	Amphilophus_citrinellus
ENSPREG00000018166	cpsf4	100	89.811	ENSAOCG00000019616	cpsf4	100	89.811	Amphiprion_ocellaris
ENSPREG00000018166	cpsf4	100	89.811	ENSAPEG00000011679	cpsf4	100	89.811	Amphiprion_percula
ENSPREG00000018166	cpsf4	100	89.888	ENSATEG00000007010	cpsf4	100	89.888	Anabas_testudineus
ENSPREG00000018166	cpsf4	100	77.695	ENSACAG00000012941	CPSF4	89	80.370	Anolis_carolinensis
ENSPREG00000018166	cpsf4	100	79.182	ENSANAG00000021360	CPSF4	100	81.481	Aotus_nancymaae
ENSPREG00000018166	cpsf4	100	88.679	ENSACLG00000010374	cpsf4	100	88.679	Astatotilapia_calliptera
ENSPREG00000018166	cpsf4	100	81.884	ENSAMXG00000031647	cpsf4	100	82.971	Astyanax_mexicanus
ENSPREG00000018166	cpsf4	100	75.573	ENSBTAG00000002090	CPSF4	100	78.409	Bos_taurus
ENSPREG00000018166	cpsf4	100	79.182	ENSCJAG00000015826	CPSF4	100	81.481	Callithrix_jacchus
ENSPREG00000018166	cpsf4	100	79.259	ENSCAFG00000015036	CPSF4	99	86.667	Canis_familiaris
ENSPREG00000018166	cpsf4	100	75.185	ENSCAFG00020014462	CPSF4	100	77.778	Canis_lupus_dingo
ENSPREG00000018166	cpsf4	100	78.519	ENSCHIG00000014313	CPSF4	100	81.481	Capra_hircus
ENSPREG00000018166	cpsf4	100	69.962	ENSTSYG00000014604	-	100	72.453	Carlito_syrichta
ENSPREG00000018166	cpsf4	100	77.481	ENSTSYG00000005712	-	100	79.924	Carlito_syrichta
ENSPREG00000018166	cpsf4	89	70.940	ENSTSYG00000008195	-	99	73.878	Carlito_syrichta
ENSPREG00000018166	cpsf4	81	77.828	ENSCAPG00000013881	CPSF4	88	80.717	Cavia_aperea
ENSPREG00000018166	cpsf4	100	77.099	ENSCPOG00000001783	CPSF4	100	79.545	Cavia_porcellus
ENSPREG00000018166	cpsf4	100	79.182	ENSCCAG00000028291	CPSF4	100	81.481	Cebus_capucinus
ENSPREG00000018166	cpsf4	100	79.182	ENSCATG00000038440	CPSF4	100	81.481	Cercocebus_atys
ENSPREG00000018166	cpsf4	100	79.182	ENSCLAG00000007050	CPSF4	100	81.852	Chinchilla_lanigera
ENSPREG00000018166	cpsf4	100	79.182	ENSCSAG00000017795	CPSF4	100	81.481	Chlorocebus_sabaeus
ENSPREG00000018166	cpsf4	80	77.315	ENSCPBG00000020869	CPSF4	100	81.106	Chrysemys_picta_bellii
ENSPREG00000018166	cpsf4	63	79.518	ENSCPBG00000010269	-	100	79.518	Chrysemys_picta_bellii
ENSPREG00000018166	cpsf4	96	58.268	ENSCING00000021080	-	96	58.103	Ciona_intestinalis
ENSPREG00000018166	cpsf4	96	54.610	ENSCSAVG00000011469	-	97	54.610	Ciona_savignyi
ENSPREG00000018166	cpsf4	100	79.182	ENSCANG00000019384	CPSF4	100	81.481	Colobus_angolensis_palliatus
ENSPREG00000018166	cpsf4	100	77.099	ENSCGRG00001024184	Cpsf4	100	79.545	Cricetulus_griseus_chok1gshd
ENSPREG00000018166	cpsf4	100	78.889	ENSCGRG00000013892	Cpsf4	100	82.222	Cricetulus_griseus_crigri
ENSPREG00000018166	cpsf4	100	87.547	ENSCSEG00000019055	cpsf4	100	87.547	Cynoglossus_semilaevis
ENSPREG00000018166	cpsf4	100	94.717	ENSCVAG00000016528	cpsf4	100	94.717	Cyprinodon_variegatus
ENSPREG00000018166	cpsf4	100	83.764	ENSDARG00000020217	cpsf4	100	83.764	Danio_rerio
ENSPREG00000018166	cpsf4	100	78.889	ENSDNOG00000006344	CPSF4	100	81.852	Dasypus_novemcinctus
ENSPREG00000018166	cpsf4	80	78.440	ENSDORG00000000742	Cpsf4	100	81.651	Dipodomys_ordii
ENSPREG00000018166	cpsf4	100	55.137	FBgn0015621	Clp	99	55.822	Drosophila_melanogaster
ENSPREG00000018166	cpsf4	71	92.121	ENSETEG00000002608	CPSF4	70	92.121	Echinops_telfairi
ENSPREG00000018166	cpsf4	99	67.692	ENSEBUG00000012552	cpsf4	98	67.692	Eptatretus_burgeri
ENSPREG00000018166	cpsf4	100	77.099	ENSEASG00005002487	CPSF4	100	79.545	Equus_asinus_asinus
ENSPREG00000018166	cpsf4	100	78.889	ENSECAG00000007525	CPSF4	100	82.222	Equus_caballus
ENSPREG00000018166	cpsf4	62	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSPREG00000018166	cpsf4	100	82.353	ENSELUG00000011481	cpsf4	100	82.353	Esox_lucius
ENSPREG00000018166	cpsf4	100	78.889	ENSFCAG00000015070	CPSF4	100	82.222	Felis_catus
ENSPREG00000018166	cpsf4	63	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSPREG00000018166	cpsf4	100	79.545	ENSFALG00000013799	CPSF4	100	79.545	Ficedula_albicollis
ENSPREG00000018166	cpsf4	90	77.459	ENSFDAG00000014092	CPSF4	100	80.738	Fukomys_damarensis
ENSPREG00000018166	cpsf4	100	95.472	ENSFHEG00000010880	cpsf4	100	95.472	Fundulus_heteroclitus
ENSPREG00000018166	cpsf4	100	82.331	ENSGMOG00000002330	cpsf4	100	82.331	Gadus_morhua
ENSPREG00000018166	cpsf4	99	36.872	ENSGALG00000004441	-	98	36.872	Gallus_gallus
ENSPREG00000018166	cpsf4	100	79.545	ENSGALG00000004714	CPSF4	100	79.545	Gallus_gallus
ENSPREG00000018166	cpsf4	100	99.242	ENSGAFG00000010580	cpsf4	100	99.242	Gambusia_affinis
ENSPREG00000018166	cpsf4	100	83.146	ENSGACG00000007792	cpsf4	100	83.146	Gasterosteus_aculeatus
ENSPREG00000018166	cpsf4	63	80.000	ENSGAGG00000020579	-	92	80.000	Gopherus_agassizii
ENSPREG00000018166	cpsf4	100	79.182	ENSGAGG00000021835	CPSF4	100	82.222	Gopherus_agassizii
ENSPREG00000018166	cpsf4	100	79.182	ENSGGOG00000015131	CPSF4	100	81.481	Gorilla_gorilla
ENSPREG00000018166	cpsf4	100	88.679	ENSHBUG00000013699	cpsf4	100	88.679	Haplochromis_burtoni
ENSPREG00000018166	cpsf4	100	81.919	ENSHGLG00000017150	CPSF4	100	81.919	Heterocephalus_glaber_female
ENSPREG00000018166	cpsf4	87	79.237	ENSHGLG00100009215	-	100	79.237	Heterocephalus_glaber_male
ENSPREG00000018166	cpsf4	66	63.006	ENSHGLG00100017302	-	89	63.158	Heterocephalus_glaber_male
ENSPREG00000018166	cpsf4	100	87.925	ENSHCOG00000004397	cpsf4	100	87.925	Hippocampus_comes
ENSPREG00000018166	cpsf4	100	82.288	ENSIPUG00000017147	cpsf4	100	83.764	Ictalurus_punctatus
ENSPREG00000018166	cpsf4	100	78.889	ENSSTOG00000001688	CPSF4	100	82.222	Ictidomys_tridecemlineatus
ENSPREG00000018166	cpsf4	100	79.182	ENSJJAG00000019426	Cpsf4	100	81.852	Jaculus_jaculus
ENSPREG00000018166	cpsf4	100	89.811	ENSKMAG00000015642	cpsf4	100	89.811	Kryptolebias_marmoratus
ENSPREG00000018166	cpsf4	100	82.657	ENSLACG00000010938	CPSF4	100	82.657	Latimeria_chalumnae
ENSPREG00000018166	cpsf4	100	60.456	ENSLACG00000018470	-	100	60.456	Latimeria_chalumnae
ENSPREG00000018166	cpsf4	100	79.554	ENSLOCG00000004814	cpsf4	100	82.156	Lepisosteus_oculatus
ENSPREG00000018166	cpsf4	100	79.259	ENSLAFG00000000159	CPSF4	100	82.222	Loxodonta_africana
ENSPREG00000018166	cpsf4	100	79.182	ENSMFAG00000001462	CPSF4	100	81.481	Macaca_fascicularis
ENSPREG00000018166	cpsf4	100	79.182	ENSMMUG00000019191	CPSF4	100	81.481	Macaca_mulatta
ENSPREG00000018166	cpsf4	100	79.182	ENSMNEG00000032306	CPSF4	100	81.481	Macaca_nemestrina
ENSPREG00000018166	cpsf4	100	79.182	ENSMLEG00000034721	CPSF4	100	81.481	Mandrillus_leucophaeus
ENSPREG00000018166	cpsf4	100	88.722	ENSMAMG00000006244	cpsf4	100	88.722	Mastacembelus_armatus
ENSPREG00000018166	cpsf4	100	88.679	ENSMZEG00005007515	cpsf4	100	88.679	Maylandia_zebra
ENSPREG00000018166	cpsf4	87	77.391	ENSMGAG00000004235	CPSF4	100	77.391	Meleagris_gallopavo
ENSPREG00000018166	cpsf4	100	78.889	ENSMAUG00000021253	Cpsf4	100	82.222	Mesocricetus_auratus
ENSPREG00000018166	cpsf4	100	79.182	ENSMICG00000017429	CPSF4	100	81.481	Microcebus_murinus
ENSPREG00000018166	cpsf4	100	78.889	ENSMOCG00000014901	Cpsf4	100	82.222	Microtus_ochrogaster
ENSPREG00000018166	cpsf4	100	89.474	ENSMMOG00000001813	cpsf4	100	89.474	Mola_mola
ENSPREG00000018166	cpsf4	100	79.554	ENSMODG00000001367	CPSF4	100	82.222	Monodelphis_domestica
ENSPREG00000018166	cpsf4	100	88.346	ENSMALG00000012611	cpsf4	100	88.346	Monopterus_albus
ENSPREG00000018166	cpsf4	100	78.889	MGP_CAROLIEiJ_G0028012	Cpsf4	100	82.222	Mus_caroli
ENSPREG00000018166	cpsf4	100	78.889	ENSMUSG00000029625	Cpsf4	100	82.222	Mus_musculus
ENSPREG00000018166	cpsf4	100	78.889	MGP_PahariEiJ_G0024581	Cpsf4	100	82.222	Mus_pahari
ENSPREG00000018166	cpsf4	100	79.554	MGP_SPRETEiJ_G0029013	Cpsf4	100	81.852	Mus_spretus
ENSPREG00000018166	cpsf4	100	78.889	ENSMPUG00000016508	CPSF4	100	82.222	Mustela_putorius_furo
ENSPREG00000018166	cpsf4	87	73.684	ENSMLUG00000010980	CPSF4	100	76.957	Myotis_lucifugus
ENSPREG00000018166	cpsf4	100	78.889	ENSNGAG00000001567	Cpsf4	100	82.222	Nannospalax_galili
ENSPREG00000018166	cpsf4	91	87.967	ENSNBRG00000003943	cpsf4	98	87.967	Neolamprologus_brichardi
ENSPREG00000018166	cpsf4	100	79.087	ENSNLEG00000011074	CPSF4	100	80.000	Nomascus_leucogenys
ENSPREG00000018166	cpsf4	100	79.554	ENSMEUG00000006955	CPSF4	100	82.222	Notamacropus_eugenii
ENSPREG00000018166	cpsf4	100	78.810	ENSOPRG00000013663	CPSF4	100	81.481	Ochotona_princeps
ENSPREG00000018166	cpsf4	98	65.116	ENSODEG00000018283	-	91	67.308	Octodon_degus
ENSPREG00000018166	cpsf4	100	78.889	ENSODEG00000011181	-	100	82.222	Octodon_degus
ENSPREG00000018166	cpsf4	100	62.868	ENSODEG00000009779	-	100	62.868	Octodon_degus
ENSPREG00000018166	cpsf4	100	88.679	ENSONIG00000008495	cpsf4	100	88.679	Oreochromis_niloticus
ENSPREG00000018166	cpsf4	87	80.426	ENSOANG00000007729	CPSF4	100	80.426	Ornithorhynchus_anatinus
ENSPREG00000018166	cpsf4	100	53.237	ENSOANG00000009568	-	100	53.237	Ornithorhynchus_anatinus
ENSPREG00000018166	cpsf4	100	78.810	ENSOCUG00000002437	CPSF4	70	81.481	Oryctolagus_cuniculus
ENSPREG00000018166	cpsf4	100	90.943	ENSORLG00000022798	cpsf4	100	90.943	Oryzias_latipes
ENSPREG00000018166	cpsf4	100	90.943	ENSORLG00020008548	cpsf4	100	90.943	Oryzias_latipes_hni
ENSPREG00000018166	cpsf4	100	90.566	ENSORLG00015019575	cpsf4	100	90.566	Oryzias_latipes_hsok
ENSPREG00000018166	cpsf4	100	89.811	ENSOMEG00000005176	cpsf4	100	89.811	Oryzias_melastigma
ENSPREG00000018166	cpsf4	100	79.554	ENSOGAG00000010884	CPSF4	100	81.852	Otolemur_garnettii
ENSPREG00000018166	cpsf4	100	71.533	ENSOARG00000018668	CPSF4	100	71.533	Ovis_aries
ENSPREG00000018166	cpsf4	100	79.182	ENSPPAG00000043355	CPSF4	100	81.481	Pan_paniscus
ENSPREG00000018166	cpsf4	100	78.889	ENSPPRG00000003134	CPSF4	100	82.222	Panthera_pardus
ENSPREG00000018166	cpsf4	90	78.189	ENSPTIG00000005604	CPSF4	90	81.481	Panthera_tigris_altaica
ENSPREG00000018166	cpsf4	100	79.182	ENSPTRG00000019453	CPSF4	100	81.481	Pan_troglodytes
ENSPREG00000018166	cpsf4	100	79.182	ENSPANG00000023123	CPSF4	100	81.481	Papio_anubis
ENSPREG00000018166	cpsf4	100	80.292	ENSPKIG00000014278	cpsf4	100	80.292	Paramormyrops_kingsleyae
ENSPREG00000018166	cpsf4	81	59.346	ENSPSIG00000018198	-	100	59.346	Pelodiscus_sinensis
ENSPREG00000018166	cpsf4	80	76.852	ENSPSIG00000011229	CPSF4	100	80.645	Pelodiscus_sinensis
ENSPREG00000018166	cpsf4	100	77.652	ENSPMGG00000017735	cpsf4	100	77.652	Periophthalmus_magnuspinnatus
ENSPREG00000018166	cpsf4	100	78.889	ENSPEMG00000004508	Cpsf4	100	82.222	Peromyscus_maniculatus_bairdii
ENSPREG00000018166	cpsf4	100	79.554	ENSPCIG00000024776	CPSF4	100	82.222	Phascolarctos_cinereus
ENSPREG00000018166	cpsf4	100	99.242	ENSPFOG00000014912	cpsf4	100	99.242	Poecilia_formosa
ENSPREG00000018166	cpsf4	100	91.985	ENSPLAG00000009599	cpsf4	100	91.985	Poecilia_latipinna
ENSPREG00000018166	cpsf4	100	99.242	ENSPMEG00000009790	cpsf4	100	99.242	Poecilia_mexicana
ENSPREG00000018166	cpsf4	87	77.350	ENSPPYG00000017378	CPSF4	100	80.000	Pongo_abelii
ENSPREG00000018166	cpsf4	100	79.259	ENSPCAG00000001892	CPSF4	100	82.222	Procavia_capensis
ENSPREG00000018166	cpsf4	100	78.889	ENSPCOG00000012771	CPSF4	100	81.852	Propithecus_coquereli
ENSPREG00000018166	cpsf4	100	74.444	ENSPVAG00000007531	CPSF4	100	77.407	Pteropus_vampyrus
ENSPREG00000018166	cpsf4	100	88.679	ENSPNYG00000018559	cpsf4	100	88.679	Pundamilia_nyererei
ENSPREG00000018166	cpsf4	100	82.246	ENSPNAG00000003736	cpsf4	100	83.696	Pygocentrus_nattereri
ENSPREG00000018166	cpsf4	100	75.954	ENSRNOG00000000985	Cpsf4	100	78.788	Rattus_norvegicus
ENSPREG00000018166	cpsf4	87	77.778	ENSRBIG00000033886	CPSF4	100	80.426	Rhinopithecus_bieti
ENSPREG00000018166	cpsf4	100	76.718	ENSRROG00000040431	CPSF4	100	79.167	Rhinopithecus_roxellana
ENSPREG00000018166	cpsf4	100	79.182	ENSSBOG00000020493	CPSF4	100	81.481	Saimiri_boliviensis_boliviensis
ENSPREG00000018166	cpsf4	100	79.554	ENSSHAG00000011533	CPSF4	100	82.222	Sarcophilus_harrisii
ENSPREG00000018166	cpsf4	100	81.884	ENSSFOG00015007883	cpsf4	100	81.884	Scleropages_formosus
ENSPREG00000018166	cpsf4	100	83.774	ENSSMAG00000006374	cpsf4	100	83.774	Scophthalmus_maximus
ENSPREG00000018166	cpsf4	100	90.602	ENSSDUG00000018887	cpsf4	100	90.602	Seriola_dumerili
ENSPREG00000018166	cpsf4	100	90.226	ENSSLDG00000019078	cpsf4	100	90.226	Seriola_lalandi_dorsalis
ENSPREG00000018166	cpsf4	87	78.205	ENSSARG00000012416	CPSF4	100	80.851	Sorex_araneus
ENSPREG00000018166	cpsf4	97	59.289	ENSSPUG00000014803	-	98	59.289	Sphenodon_punctatus
ENSPREG00000018166	cpsf4	100	81.481	ENSSPUG00000003549	CPSF4	100	81.481	Sphenodon_punctatus
ENSPREG00000018166	cpsf4	100	84.091	ENSSPAG00000006174	cpsf4	100	84.091	Stegastes_partitus
ENSPREG00000018166	cpsf4	100	77.481	ENSSSCG00000026896	CPSF4	100	79.167	Sus_scrofa
ENSPREG00000018166	cpsf4	100	78.571	ENSTGUG00000007552	CPSF4	100	78.571	Taeniopygia_guttata
ENSPREG00000018166	cpsf4	100	86.038	ENSTRUG00000024220	cpsf4	100	86.038	Takifugu_rubripes
ENSPREG00000018166	cpsf4	100	87.170	ENSTNIG00000006265	cpsf4	100	87.170	Tetraodon_nigroviridis
ENSPREG00000018166	cpsf4	87	70.940	ENSTBEG00000011406	CPSF4	100	72.340	Tupaia_belangeri
ENSPREG00000018166	cpsf4	75	92.529	ENSTTRG00000003007	CPSF4	100	71.004	Tursiops_truncatus
ENSPREG00000018166	cpsf4	92	74.583	ENSUAMG00000008051	CPSF4	85	77.686	Ursus_americanus
ENSPREG00000018166	cpsf4	100	75.954	ENSUMAG00000009474	CPSF4	100	78.788	Ursus_maritimus
ENSPREG00000018166	cpsf4	100	77.099	ENSVVUG00000008824	CPSF4	100	79.545	Vulpes_vulpes
ENSPREG00000018166	cpsf4	100	75.627	ENSXETG00000009892	cpsf4	100	78.136	Xenopus_tropicalis
ENSPREG00000018166	cpsf4	99	60.370	ENSXETG00000004641	cpsf4l	99	60.370	Xenopus_tropicalis
ENSPREG00000018166	cpsf4	100	98.864	ENSXCOG00000016040	cpsf4	100	98.864	Xiphophorus_couchianus
ENSPREG00000018166	cpsf4	100	99.242	ENSXMAG00000024670	cpsf4	100	99.242	Xiphophorus_maculatus