EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000018443 (Gene tree)
Gene ID: 103478665
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 15239 bases
Position: chrLG16:16248681-16263919
Accession: 103478665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000027312	ResIII	PF04851.15	6.8e-12	1	1
ENSPREP00000027288	ResIII	PF04851.15	7.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000027578	-	2815	XM_008432648	ENSPREP00000027288	937 (aa)	XP_008430870	UPI0004A26ABA
ENSPRET00000027603	-	2601	-	ENSPREP00000027312	866 (aa)	-	-

Gene Model

Click here to download ENSPREG00000018443's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000018443's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000018443	rad54b	77	42.442	ENSPREG00000019955	rad54l	89	42.213
ENSPREG00000018443	rad54b	62	30.809	ENSPREG00000017617	ercc6l	50	31.449
ENSPREG00000018443	rad54b	58	31.089	ENSPREG00000017885	chd1l	51	31.089
ENSPREG00000018443	rad54b	58	33.898	ENSPREG00000020337	hells	61	32.328
ENSPREG00000018443	rad54b	56	31.154	ENSPREG00000018185	smarcad1a	50	31.154

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000018443	rad54b	99	54.940	ENSG00000197275	RAD54B	99	54.940	Homo_sapiens
ENSPREG00000018443	rad54b	83	59.754	ENSG00000265817	FSBP	99	59.754	Homo_sapiens
ENSPREG00000018443	rad54b	99	56.489	ENSAMEG00000005834	-	99	56.489	Ailuropoda_melanoleuca
ENSPREG00000018443	rad54b	99	82.326	ENSACIG00000013005	rad54b	97	86.000	Amphilophus_citrinellus
ENSPREG00000018443	rad54b	99	82.516	ENSAOCG00000008523	rad54b	99	82.516	Amphiprion_ocellaris
ENSPREG00000018443	rad54b	99	78.192	ENSAPEG00000001673	rad54b	99	78.192	Amphiprion_percula
ENSPREG00000018443	rad54b	99	83.455	ENSATEG00000001527	rad54b	99	83.678	Anabas_testudineus
ENSPREG00000018443	rad54b	100	57.900	ENSAPLG00000014366	-	100	57.900	Anas_platyrhynchos
ENSPREG00000018443	rad54b	90	60.864	ENSACAG00000003671	-	98	60.963	Anolis_carolinensis
ENSPREG00000018443	rad54b	73	61.300	ENSANAG00000019528	-	99	61.682	Aotus_nancymaae
ENSPREG00000018443	rad54b	99	82.755	ENSACLG00000007826	rad54b	99	85.732	Astatotilapia_calliptera
ENSPREG00000018443	rad54b	89	68.926	ENSAMXG00000039985	rad54b	95	68.553	Astyanax_mexicanus
ENSPREG00000018443	rad54b	99	56.736	ENSBTAG00000000632	RAD54B	99	56.736	Bos_taurus
ENSPREG00000018443	rad54b	82	35.618	WBGene00013792	Y116A8C.13	97	33.756	Caenorhabditis_elegans
ENSPREG00000018443	rad54b	99	54.459	ENSCJAG00000000080	-	99	59.699	Callithrix_jacchus
ENSPREG00000018443	rad54b	99	56.489	ENSCAFG00000009179	RAD54B	99	56.489	Canis_familiaris
ENSPREG00000018443	rad54b	99	56.489	ENSCAFG00020012084	-	99	56.489	Canis_lupus_dingo
ENSPREG00000018443	rad54b	99	56.407	ENSCHIG00000008230	-	99	56.407	Capra_hircus
ENSPREG00000018443	rad54b	99	56.366	ENSTSYG00000013234	-	99	56.366	Carlito_syrichta
ENSPREG00000018443	rad54b	100	56.346	ENSCPOG00000011643	-	100	56.346	Cavia_porcellus
ENSPREG00000018443	rad54b	99	54.681	ENSCCAG00000011754	-	99	59.563	Cebus_capucinus
ENSPREG00000018443	rad54b	99	54.951	ENSCATG00000030661	-	99	59.918	Cercocebus_atys
ENSPREG00000018443	rad54b	99	57.287	ENSCLAG00000010476	-	99	57.287	Chinchilla_lanigera
ENSPREG00000018443	rad54b	99	55.398	ENSCSAG00000012712	-	99	55.398	Chlorocebus_sabaeus
ENSPREG00000018443	rad54b	99	57.569	ENSCPBG00000003204	-	98	59.212	Chrysemys_picta_bellii
ENSPREG00000018443	rad54b	99	55.277	ENSCANG00000017939	-	99	60.055	Colobus_angolensis_palliatus
ENSPREG00000018443	rad54b	99	56.390	ENSCGRG00001020184	Rad54b	99	56.390	Cricetulus_griseus_chok1gshd
ENSPREG00000018443	rad54b	99	54.817	ENSCGRG00000016752	Rad54b	99	54.817	Cricetulus_griseus_crigri
ENSPREG00000018443	rad54b	99	78.216	ENSCSEG00000001601	rad54b	99	81.407	Cynoglossus_semilaevis
ENSPREG00000018443	rad54b	99	86.728	ENSCVAG00000009200	rad54b	99	86.728	Cyprinodon_variegatus
ENSPREG00000018443	rad54b	99	63.242	ENSDARG00000092134	rad54b	99	68.799	Danio_rerio
ENSPREG00000018443	rad54b	99	56.114	ENSDNOG00000015535	-	99	56.114	Dasypus_novemcinctus
ENSPREG00000018443	rad54b	99	57.871	ENSDORG00000002492	Rad54b	99	57.871	Dipodomys_ordii
ENSPREG00000018443	rad54b	87	57.265	ENSETEG00000010605	-	100	58.008	Echinops_telfairi
ENSPREG00000018443	rad54b	100	46.833	ENSEBUG00000009104	rad54b	99	46.618	Eptatretus_burgeri
ENSPREG00000018443	rad54b	90	60.050	ENSEASG00005004021	-	89	60.050	Equus_asinus_asinus
ENSPREG00000018443	rad54b	99	54.947	ENSECAG00000021949	-	99	54.947	Equus_caballus
ENSPREG00000018443	rad54b	75	52.201	ENSEEUG00000008056	-	72	52.201	Erinaceus_europaeus
ENSPREG00000018443	rad54b	99	71.792	ENSELUG00000009287	rad54b	99	71.792	Esox_lucius
ENSPREG00000018443	rad54b	99	55.917	ENSFCAG00000015513	-	99	60.437	Felis_catus
ENSPREG00000018443	rad54b	99	57.746	ENSFALG00000005467	-	99	57.746	Ficedula_albicollis
ENSPREG00000018443	rad54b	99	55.700	ENSFDAG00000020541	-	99	55.700	Fukomys_damarensis
ENSPREG00000018443	rad54b	97	83.825	ENSFHEG00000014382	rad54b	93	83.825	Fundulus_heteroclitus
ENSPREG00000018443	rad54b	90	79.214	ENSGMOG00000014774	rad54b	98	79.848	Gadus_morhua
ENSPREG00000018443	rad54b	100	57.667	ENSGALG00000043597	RAD54B	100	57.667	Gallus_gallus
ENSPREG00000018443	rad54b	100	95.518	ENSGAFG00000007901	rad54b	100	95.518	Gambusia_affinis
ENSPREG00000018443	rad54b	99	75.290	ENSGACG00000009128	rad54b	99	75.290	Gasterosteus_aculeatus
ENSPREG00000018443	rad54b	99	57.537	ENSGAGG00000018747	-	99	57.537	Gopherus_agassizii
ENSPREG00000018443	rad54b	99	55.292	ENSGGOG00000023516	-	99	55.292	Gorilla_gorilla
ENSPREG00000018443	rad54b	99	84.531	ENSHBUG00000016017	rad54b	99	82.177	Haplochromis_burtoni
ENSPREG00000018443	rad54b	99	55.398	ENSHGLG00000008263	RAD54B	98	55.398	Heterocephalus_glaber_female
ENSPREG00000018443	rad54b	99	54.713	ENSHGLG00100008108	-	98	54.713	Heterocephalus_glaber_male
ENSPREG00000018443	rad54b	99	71.429	ENSHCOG00000004764	rad54b	98	75.031	Hippocampus_comes
ENSPREG00000018443	rad54b	99	61.371	ENSIPUG00000018531	rad54b	99	61.371	Ictalurus_punctatus
ENSPREG00000018443	rad54b	99	54.506	ENSSTOG00000010791	-	99	54.506	Ictidomys_tridecemlineatus
ENSPREG00000018443	rad54b	99	54.017	ENSJJAG00000010314	Rad54b	99	54.017	Jaculus_jaculus
ENSPREG00000018443	rad54b	99	80.578	ENSKMAG00000004744	rad54b	95	84.949	Kryptolebias_marmoratus
ENSPREG00000018443	rad54b	85	64.800	ENSLACG00000000859	-	100	64.847	Latimeria_chalumnae
ENSPREG00000018443	rad54b	99	63.958	ENSLOCG00000010100	rad54b	99	67.727	Lepisosteus_oculatus
ENSPREG00000018443	rad54b	90	58.616	ENSLAFG00000015315	-	97	58.720	Loxodonta_africana
ENSPREG00000018443	rad54b	99	55.109	ENSMFAG00000031629	-	99	59.781	Macaca_fascicularis
ENSPREG00000018443	rad54b	99	55.109	ENSMMUG00000005659	-	99	54.951	Macaca_mulatta
ENSPREG00000018443	rad54b	99	55.277	ENSMNEG00000016408	-	99	55.277	Macaca_nemestrina
ENSPREG00000018443	rad54b	99	55.109	ENSMLEG00000006946	-	99	55.109	Mandrillus_leucophaeus
ENSPREG00000018443	rad54b	99	79.025	ENSMAMG00000012269	rad54b	99	79.025	Mastacembelus_armatus
ENSPREG00000018443	rad54b	99	84.531	ENSMZEG00005005281	rad54b	96	85.590	Maylandia_zebra
ENSPREG00000018443	rad54b	100	57.251	ENSMGAG00000012024	-	100	57.251	Meleagris_gallopavo
ENSPREG00000018443	rad54b	99	56.376	ENSMAUG00000013586	Rad54b	99	56.376	Mesocricetus_auratus
ENSPREG00000018443	rad54b	99	56.144	ENSMICG00000000754	-	100	56.144	Microcebus_murinus
ENSPREG00000018443	rad54b	100	55.791	ENSMOCG00000020035	Rad54b	100	55.679	Microtus_ochrogaster
ENSPREG00000018443	rad54b	99	79.954	ENSMMOG00000003394	rad54b	98	82.488	Mola_mola
ENSPREG00000018443	rad54b	90	59.142	ENSMODG00000007343	-	97	59.245	Monodelphis_domestica
ENSPREG00000018443	rad54b	73	85.489	ENSMALG00000001520	rad54b	99	85.489	Monopterus_albus
ENSPREG00000018443	rad54b	99	56.181	MGP_CAROLIEiJ_G0025810	Rad54b	99	56.402	Mus_caroli
ENSPREG00000018443	rad54b	99	55.519	ENSMUSG00000078773	Rad54b	99	55.519	Mus_musculus
ENSPREG00000018443	rad54b	99	56.146	MGP_PahariEiJ_G0023933	Rad54b	99	56.146	Mus_pahari
ENSPREG00000018443	rad54b	99	55.752	MGP_SPRETEiJ_G0026758	Rad54b	99	55.752	Mus_spretus
ENSPREG00000018443	rad54b	91	59.874	ENSMPUG00000008878	-	97	59.874	Mustela_putorius_furo
ENSPREG00000018443	rad54b	99	55.652	ENSMLUG00000008953	-	99	55.652	Myotis_lucifugus
ENSPREG00000018443	rad54b	99	55.470	ENSNGAG00000017537	Rad54b	99	55.470	Nannospalax_galili
ENSPREG00000018443	rad54b	99	82.986	ENSNBRG00000013394	rad54b	99	85.856	Neolamprologus_brichardi
ENSPREG00000018443	rad54b	100	55.206	ENSNLEG00000003062	-	100	59.350	Nomascus_leucogenys
ENSPREG00000018443	rad54b	74	61.275	ENSMEUG00000012426	-	71	61.275	Notamacropus_eugenii
ENSPREG00000018443	rad54b	99	56.813	ENSODEG00000019564	-	99	56.813	Octodon_degus
ENSPREG00000018443	rad54b	83	77.273	ENSODEG00000002650	-	96	77.273	Octodon_degus
ENSPREG00000018443	rad54b	99	85.036	ENSONIG00000006067	rad54b	99	82.836	Oreochromis_niloticus
ENSPREG00000018443	rad54b	86	60.847	ENSOANG00000011348	-	99	60.847	Ornithorhynchus_anatinus
ENSPREG00000018443	rad54b	99	55.157	ENSOCUG00000016478	-	99	55.277	Oryctolagus_cuniculus
ENSPREG00000018443	rad54b	99	79.745	ENSORLG00000008918	rad54b	99	85.670	Oryzias_latipes
ENSPREG00000018443	rad54b	73	85.226	ENSORLG00020012171	rad54b	99	85.670	Oryzias_latipes_hni
ENSPREG00000018443	rad54b	99	79.153	ENSORLG00015018536	rad54b	99	79.153	Oryzias_latipes_hsok
ENSPREG00000018443	rad54b	88	84.424	ENSOMEG00000004345	rad54b	99	84.424	Oryzias_melastigma
ENSPREG00000018443	rad54b	99	53.905	ENSOGAG00000007854	-	100	53.905	Otolemur_garnettii
ENSPREG00000018443	rad54b	91	61.055	ENSOARG00000007691	-	97	61.181	Ovis_aries
ENSPREG00000018443	rad54b	99	54.072	ENSPPAG00000029572	-	99	54.072	Pan_paniscus
ENSPREG00000018443	rad54b	99	55.809	ENSPPRG00000007571	-	99	60.164	Panthera_pardus
ENSPREG00000018443	rad54b	83	60.164	ENSPTIG00000012670	-	99	60.164	Panthera_tigris_altaica
ENSPREG00000018443	rad54b	99	55.157	ENSPTRG00000020427	-	99	59.482	Pan_troglodytes
ENSPREG00000018443	rad54b	99	55.109	ENSPANG00000019566	-	99	54.951	Papio_anubis
ENSPREG00000018443	rad54b	99	64.195	ENSPKIG00000014974	rad54b	99	64.195	Paramormyrops_kingsleyae
ENSPREG00000018443	rad54b	99	57.329	ENSPSIG00000002383	-	95	63.118	Pelodiscus_sinensis
ENSPREG00000018443	rad54b	99	57.397	ENSPEMG00000012133	Rad54b	99	57.397	Peromyscus_maniculatus_bairdii
ENSPREG00000018443	rad54b	90	59.039	ENSPMAG00000002916	rad54b	98	59.039	Petromyzon_marinus
ENSPREG00000018443	rad54b	93	58.557	ENSPCIG00000020151	-	93	59.268	Phascolarctos_cinereus
ENSPREG00000018443	rad54b	100	97.012	ENSPFOG00000023411	rad54b	100	97.012	Poecilia_formosa
ENSPREG00000018443	rad54b	100	97.118	ENSPLAG00000010430	rad54b	100	97.118	Poecilia_latipinna
ENSPREG00000018443	rad54b	100	97.225	ENSPMEG00000016873	rad54b	100	97.225	Poecilia_mexicana
ENSPREG00000018443	rad54b	99	54.295	ENSPPYG00000018750	-	99	54.457	Pongo_abelii
ENSPREG00000018443	rad54b	99	55.124	ENSPCOG00000026845	-	100	58.895	Propithecus_coquereli
ENSPREG00000018443	rad54b	85	59.546	ENSPVAG00000000261	-	86	59.546	Pteropus_vampyrus
ENSPREG00000018443	rad54b	92	84.211	ENSPNYG00000018303	rad54b	97	84.211	Pundamilia_nyererei
ENSPREG00000018443	rad54b	99	64.908	ENSPNAG00000000295	rad54b	99	64.908	Pygocentrus_nattereri
ENSPREG00000018443	rad54b	99	56.715	ENSRNOG00000039949	Rad54b	99	56.715	Rattus_norvegicus
ENSPREG00000018443	rad54b	99	55.191	ENSRBIG00000020419	-	99	55.191	Rhinopithecus_bieti
ENSPREG00000018443	rad54b	99	55.191	ENSRROG00000039897	-	99	55.191	Rhinopithecus_roxellana
ENSPREG00000018443	rad54b	88	35.962	YBR073W	RDH54	82	35.800	Saccharomyces_cerevisiae
ENSPREG00000018443	rad54b	99	54.555	ENSSBOG00000028501	-	99	54.555	Saimiri_boliviensis_boliviensis
ENSPREG00000018443	rad54b	99	54.958	ENSSHAG00000017038	-	99	55.016	Sarcophilus_harrisii
ENSPREG00000018443	rad54b	66	71.701	ENSSFOG00015008483	rad54b	90	71.701	Scleropages_formosus
ENSPREG00000018443	rad54b	99	82.509	ENSSMAG00000018659	rad54b	99	83.019	Scophthalmus_maximus
ENSPREG00000018443	rad54b	97	81.887	ENSSDUG00000001122	rad54b	97	81.887	Seriola_dumerili
ENSPREG00000018443	rad54b	99	82.857	ENSSLDG00000013787	rad54b	99	82.857	Seriola_lalandi_dorsalis
ENSPREG00000018443	rad54b	99	59.060	ENSSPUG00000016497	-	100	59.060	Sphenodon_punctatus
ENSPREG00000018443	rad54b	99	82.393	ENSSPAG00000012800	rad54b	99	82.393	Stegastes_partitus
ENSPREG00000018443	rad54b	99	56.493	ENSSSCG00000006101	-	98	60.859	Sus_scrofa
ENSPREG00000018443	rad54b	99	57.375	ENSTGUG00000011880	-	99	57.375	Taeniopygia_guttata
ENSPREG00000018443	rad54b	99	76.818	ENSTRUG00000010015	rad54b	99	76.818	Takifugu_rubripes
ENSPREG00000018443	rad54b	99	52.355	ENSTTRG00000006312	-	99	52.355	Tursiops_truncatus
ENSPREG00000018443	rad54b	99	56.707	ENSUMAG00000016401	-	99	56.707	Ursus_maritimus
ENSPREG00000018443	rad54b	99	54.593	ENSVPAG00000003157	-	99	54.593	Vicugna_pacos
ENSPREG00000018443	rad54b	99	51.002	ENSXETG00000025924	rad54b	98	54.397	Xenopus_tropicalis
ENSPREG00000018443	rad54b	100	92.414	ENSXMAG00000013141	rad54b	100	94.595	Xiphophorus_maculatus