EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000019039 (Gene tree)
Gene ID: 103479959
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 12035 bases
Position: chrLG17:28577927-28589961
Accession: 103479959
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000028170	EST1	PF10374.9	3.3e-24	1	1
ENSPREP00000028141	EST1	PF10374.9	3.6e-24	1	1
ENSPREP00000028209	EST1	PF10374.9	3.9e-24	1	1
ENSPREP00000028123	EST1	PF10374.9	4.2e-24	1	1
ENSPREP00000028209	EST1_DNA_bind	PF10373.9	4.4e-48	1	1
ENSPREP00000028123	EST1_DNA_bind	PF10373.9	4.9e-48	1	1
ENSPREP00000028170	EST1_DNA_bind	PF10373.9	2.1e-47	1	1
ENSPREP00000028141	EST1_DNA_bind	PF10373.9	2.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000028432	-	3479	-	ENSPREP00000028123	1158 (aa)	-	-
ENSPRET00000028450	-	3968	XM_008434679	ENSPREP00000028141	1111 (aa)	XP_008432901	-
ENSPRET00000028521	-	3986	-	ENSPREP00000028209	1117 (aa)	-	-
ENSPRET00000028479	-	3821	XM_008434680	ENSPREP00000028170	1062 (aa)	XP_008432902	-

Gene Model

Click here to download ENSPREG00000019039's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000019039's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000019039	smg7	91	61.759	ENSG00000116698	SMG7	88	90.062	Homo_sapiens
ENSPREG00000019039	smg7	81	85.290	ENSAPOG00000009611	smg7	82	85.290	Acanthochromis_polyacanthus
ENSPREG00000019039	smg7	91	61.867	ENSAMEG00000002357	SMG7	88	60.568	Ailuropoda_melanoleuca
ENSPREG00000019039	smg7	88	75.833	ENSACIG00000015152	smg7	86	76.299	Amphilophus_citrinellus
ENSPREG00000019039	smg7	92	80.076	ENSAOCG00000013538	smg7	88	80.361	Amphiprion_ocellaris
ENSPREG00000019039	smg7	92	79.905	ENSAPEG00000007851	smg7	88	80.190	Amphiprion_percula
ENSPREG00000019039	smg7	91	79.266	ENSATEG00000006931	smg7	87	78.671	Anabas_testudineus
ENSPREG00000019039	smg7	91	60.784	ENSAPLG00000015811	SMG7	85	63.987	Anas_platyrhynchos
ENSPREG00000019039	smg7	92	61.142	ENSACAG00000014989	SMG7	88	61.308	Anolis_carolinensis
ENSPREG00000019039	smg7	92	61.351	ENSANAG00000028114	SMG7	85	89.809	Aotus_nancymaae
ENSPREG00000019039	smg7	92	79.123	ENSACLG00000022079	smg7	88	78.912	Astatotilapia_calliptera
ENSPREG00000019039	smg7	92	71.863	ENSAMXG00000020809	smg7	88	72.201	Astyanax_mexicanus
ENSPREG00000019039	smg7	91	61.259	ENSBTAG00000008003	SMG7	87	61.357	Bos_taurus
ENSPREG00000019039	smg7	92	61.466	ENSCJAG00000005135	SMG7	86	89.809	Callithrix_jacchus
ENSPREG00000019039	smg7	92	60.227	ENSCAFG00000013276	SMG7	85	59.564	Canis_familiaris
ENSPREG00000019039	smg7	92	61.654	ENSCAFG00020015475	SMG7	89	87.195	Canis_lupus_dingo
ENSPREG00000019039	smg7	92	59.830	ENSCHIG00000018192	SMG7	87	59.868	Capra_hircus
ENSPREG00000019039	smg7	91	61.561	ENSTSYG00000002667	SMG7	81	89.809	Carlito_syrichta
ENSPREG00000019039	smg7	92	60.417	ENSCPOG00000008906	SMG7	87	59.375	Cavia_porcellus
ENSPREG00000019039	smg7	91	61.736	ENSCCAG00000028596	SMG7	85	89.809	Cebus_capucinus
ENSPREG00000019039	smg7	91	61.957	ENSCATG00000011063	SMG7	85	89.809	Cercocebus_atys
ENSPREG00000019039	smg7	91	61.561	ENSCLAG00000010751	SMG7	87	61.622	Chinchilla_lanigera
ENSPREG00000019039	smg7	92	60.208	ENSCSAG00000012654	SMG7	85	60.170	Chlorocebus_sabaeus
ENSPREG00000019039	smg7	86	53.707	ENSCHOG00000010522	SMG7	84	53.460	Choloepus_hoffmanni
ENSPREG00000019039	smg7	92	63.089	ENSCPBG00000015724	SMG7	88	62.429	Chrysemys_picta_bellii
ENSPREG00000019039	smg7	91	61.806	ENSCANG00000015680	SMG7	85	89.809	Colobus_angolensis_palliatus
ENSPREG00000019039	smg7	91	60.669	ENSCGRG00001013705	Smg7	87	60.728	Cricetulus_griseus_chok1gshd
ENSPREG00000019039	smg7	91	60.474	ENSCGRG00000018401	Smg7	87	60.534	Cricetulus_griseus_crigri
ENSPREG00000019039	smg7	92	80.889	ENSCVAG00000011842	smg7	88	82.689	Cyprinodon_variegatus
ENSPREG00000019039	smg7	92	71.592	ENSDARG00000060767	smg7	88	71.646	Danio_rerio
ENSPREG00000019039	smg7	92	59.735	ENSDORG00000007331	Smg7	87	59.867	Dipodomys_ordii
ENSPREG00000019039	smg7	91	60.397	ENSETEG00000002654	SMG7	90	60.360	Echinops_telfairi
ENSPREG00000019039	smg7	92	60.113	ENSEASG00005006524	SMG7	87	60.342	Equus_asinus_asinus
ENSPREG00000019039	smg7	92	60.208	ENSECAG00000004313	SMG7	87	60.436	Equus_caballus
ENSPREG00000019039	smg7	92	58.702	ENSEEUG00000002024	SMG7	85	59.431	Erinaceus_europaeus
ENSPREG00000019039	smg7	92	72.978	ENSELUG00000010293	smg7	89	73.359	Esox_lucius
ENSPREG00000019039	smg7	92	60.474	ENSFCAG00000010900	SMG7	86	61.489	Felis_catus
ENSPREG00000019039	smg7	92	59.981	ENSFALG00000003047	SMG7	87	61.591	Ficedula_albicollis
ENSPREG00000019039	smg7	91	60.076	ENSFDAG00000012121	SMG7	86	60.038	Fukomys_damarensis
ENSPREG00000019039	smg7	91	84.438	ENSFHEG00000011073	smg7	87	84.337	Fundulus_heteroclitus
ENSPREG00000019039	smg7	78	79.323	ENSGMOG00000004916	smg7	81	79.323	Gadus_morhua
ENSPREG00000019039	smg7	91	61.035	ENSGALG00000004667	SMG7	86	64.583	Gallus_gallus
ENSPREG00000019039	smg7	91	93.548	ENSGAFG00000019000	smg7	87	93.145	Gambusia_affinis
ENSPREG00000019039	smg7	91	77.465	ENSGACG00000001634	smg7	89	77.755	Gasterosteus_aculeatus
ENSPREG00000019039	smg7	91	61.660	ENSGGOG00000002342	SMG7	82	88.750	Gorilla_gorilla
ENSPREG00000019039	smg7	92	79.123	ENSHBUG00000003726	smg7	89	78.817	Haplochromis_burtoni
ENSPREG00000019039	smg7	91	62.055	ENSHGLG00000009353	SMG7	87	62.018	Heterocephalus_glaber_female
ENSPREG00000019039	smg7	91	61.957	ENSHGLG00100009637	-	87	61.919	Heterocephalus_glaber_male
ENSPREG00000019039	smg7	90	55.352	ENSHGLG00100004878	-	89	54.206	Heterocephalus_glaber_male
ENSPREG00000019039	smg7	92	72.259	ENSIPUG00000016997	smg7	88	72.259	Ictalurus_punctatus
ENSPREG00000019039	smg7	92	60.076	ENSSTOG00000000401	SMG7	87	60.342	Ictidomys_tridecemlineatus
ENSPREG00000019039	smg7	91	60.246	ENSJJAG00000012351	Smg7	87	60.057	Jaculus_jaculus
ENSPREG00000019039	smg7	88	74.923	ENSKMAG00000004900	smg7	87	75.645	Kryptolebias_marmoratus
ENSPREG00000019039	smg7	69	60.800	ENSLBEG00000005220	-	75	71.859	Labrus_bergylta
ENSPREG00000019039	smg7	91	77.621	ENSLBEG00000002983	smg7	87	78.125	Labrus_bergylta
ENSPREG00000019039	smg7	92	63.485	ENSLACG00000000972	SMG7	88	63.510	Latimeria_chalumnae
ENSPREG00000019039	smg7	91	65.695	ENSLOCG00000002010	smg7	87	65.005	Lepisosteus_oculatus
ENSPREG00000019039	smg7	92	59.735	ENSLAFG00000008186	SMG7	87	59.714	Loxodonta_africana
ENSPREG00000019039	smg7	92	60.208	ENSMFAG00000031653	SMG7	85	89.809	Macaca_fascicularis
ENSPREG00000019039	smg7	92	60.208	ENSMMUG00000018458	SMG7	87	61.022	Macaca_mulatta
ENSPREG00000019039	smg7	91	61.957	ENSMNEG00000034798	SMG7	85	89.809	Macaca_nemestrina
ENSPREG00000019039	smg7	91	61.957	ENSMLEG00000037170	SMG7	87	62.018	Mandrillus_leucophaeus
ENSPREG00000019039	smg7	92	77.062	ENSMAMG00000018733	smg7	85	77.609	Mastacembelus_armatus
ENSPREG00000019039	smg7	92	79.392	ENSMZEG00005015247	smg7	88	78.817	Maylandia_zebra
ENSPREG00000019039	smg7	91	60.511	ENSMGAG00000001561	SMG7	85	64.018	Meleagris_gallopavo
ENSPREG00000019039	smg7	91	60.707	ENSMAUG00000019484	Smg7	87	60.767	Mesocricetus_auratus
ENSPREG00000019039	smg7	91	62.451	ENSMICG00000007145	SMG7	82	89.809	Microcebus_murinus
ENSPREG00000019039	smg7	91	60.767	ENSMOCG00000020748	Smg7	87	60.374	Microtus_ochrogaster
ENSPREG00000019039	smg7	91	75.100	ENSMMOG00000001524	smg7	85	80.769	Mola_mola
ENSPREG00000019039	smg7	91	61.471	ENSMODG00000007139	SMG7	94	61.176	Monodelphis_domestica
ENSPREG00000019039	smg7	92	79.003	ENSMALG00000000061	smg7	82	79.962	Monopterus_albus
ENSPREG00000019039	smg7	91	61.538	MGP_CAROLIEiJ_G0014704	Smg7	87	61.144	Mus_caroli
ENSPREG00000019039	smg7	91	61.062	ENSMUSG00000042772	Smg7	87	61.122	Mus_musculus
ENSPREG00000019039	smg7	91	61.259	MGP_PahariEiJ_G0027940	Smg7	87	61.319	Mus_pahari
ENSPREG00000019039	smg7	91	61.160	MGP_SPRETEiJ_G0015511	Smg7	87	61.220	Mus_spretus
ENSPREG00000019039	smg7	92	58.945	ENSMPUG00000011732	SMG7	85	59.673	Mustela_putorius_furo
ENSPREG00000019039	smg7	91	60.265	ENSMLUG00000015417	SMG7	87	60.038	Myotis_lucifugus
ENSPREG00000019039	smg7	91	61.193	ENSNGAG00000009836	Smg7	87	60.627	Nannospalax_galili
ENSPREG00000019039	smg7	90	71.923	ENSNBRG00000024343	smg7	86	71.690	Neolamprologus_brichardi
ENSPREG00000019039	smg7	91	61.858	ENSNLEG00000018018	SMG7	87	61.919	Nomascus_leucogenys
ENSPREG00000019039	smg7	74	64.773	ENSMEUG00000004681	SMG7	73	64.773	Notamacropus_eugenii
ENSPREG00000019039	smg7	91	58.333	ENSOPRG00000013942	SMG7	86	57.774	Ochotona_princeps
ENSPREG00000019039	smg7	91	61.591	ENSODEG00000010390	SMG7	87	61.554	Octodon_degus
ENSPREG00000019039	smg7	91	79.079	ENSONIG00000000277	smg7	87	78.858	Oreochromis_niloticus
ENSPREG00000019039	smg7	92	59.570	ENSOANG00000000994	SMG7	87	60.476	Ornithorhynchus_anatinus
ENSPREG00000019039	smg7	92	59.040	ENSOCUG00000005887	SMG7	81	58.741	Oryctolagus_cuniculus
ENSPREG00000019039	smg7	92	79.086	ENSORLG00000007314	smg7	70	98.013	Oryzias_latipes
ENSPREG00000019039	smg7	92	79.280	ENSORLG00020015779	smg7	69	97.351	Oryzias_latipes_hni
ENSPREG00000019039	smg7	92	79.377	ENSORLG00015012289	smg7	87	78.988	Oryzias_latipes_hsok
ENSPREG00000019039	smg7	99	76.670	ENSOMEG00000002328	smg7	92	77.046	Oryzias_melastigma
ENSPREG00000019039	smg7	91	60.456	ENSOGAG00000003107	SMG7	84	59.924	Otolemur_garnettii
ENSPREG00000019039	smg7	92	59.886	ENSOARG00000001352	SMG7	87	59.820	Ovis_aries
ENSPREG00000019039	smg7	91	61.858	ENSPPAG00000031619	SMG7	90	86.667	Pan_paniscus
ENSPREG00000019039	smg7	91	62.205	ENSPPRG00000011222	SMG7	87	61.614	Panthera_pardus
ENSPREG00000019039	smg7	92	60.474	ENSPTIG00000007242	SMG7	88	60.700	Panthera_tigris_altaica
ENSPREG00000019039	smg7	91	61.858	ENSPTRG00000001764	SMG7	85	89.809	Pan_troglodytes
ENSPREG00000019039	smg7	91	61.957	ENSPANG00000004520	SMG7	87	62.018	Papio_anubis
ENSPREG00000019039	smg7	92	67.115	ENSPKIG00000007242	smg7	89	68.138	Paramormyrops_kingsleyae
ENSPREG00000019039	smg7	90	62.763	ENSPSIG00000012201	SMG7	87	61.862	Pelodiscus_sinensis
ENSPREG00000019039	smg7	52	69.388	ENSPMGG00000021833	smg7	74	69.388	Periophthalmus_magnuspinnatus
ENSPREG00000019039	smg7	92	59.737	ENSPEMG00000011315	Smg7	87	60.179	Peromyscus_maniculatus_bairdii
ENSPREG00000019039	smg7	91	62.535	ENSPCIG00000003786	SMG7	89	90.625	Phascolarctos_cinereus
ENSPREG00000019039	smg7	92	92.891	ENSPFOG00000019219	smg7	88	93.372	Poecilia_formosa
ENSPREG00000019039	smg7	91	93.037	ENSPLAG00000001446	smg7	87	93.542	Poecilia_latipinna
ENSPREG00000019039	smg7	91	92.936	ENSPMEG00000005218	smg7	90	93.441	Poecilia_mexicana
ENSPREG00000019039	smg7	91	61.858	ENSPPYG00000000427	SMG7	87	61.820	Pongo_abelii
ENSPREG00000019039	smg7	92	51.318	ENSPCAG00000008360	SMG7	85	52.408	Procavia_capensis
ENSPREG00000019039	smg7	92	60.491	ENSPCOG00000011996	SMG7	77	89.809	Propithecus_coquereli
ENSPREG00000019039	smg7	97	53.911	ENSPVAG00000000851	SMG7	84	56.244	Pteropus_vampyrus
ENSPREG00000019039	smg7	92	79.294	ENSPNYG00000007643	smg7	88	78.988	Pundamilia_nyererei
ENSPREG00000019039	smg7	92	71.632	ENSPNAG00000011374	smg7	88	71.780	Pygocentrus_nattereri
ENSPREG00000019039	smg7	91	61.395	ENSRNOG00000027962	Smg7	99	63.366	Rattus_norvegicus
ENSPREG00000019039	smg7	91	61.858	ENSRBIG00000036316	SMG7	87	61.919	Rhinopithecus_bieti
ENSPREG00000019039	smg7	91	61.858	ENSRROG00000035719	SMG7	87	61.919	Rhinopithecus_roxellana
ENSPREG00000019039	smg7	91	60.265	ENSSBOG00000023454	SMG7	88	90.062	Saimiri_boliviensis_boliviensis
ENSPREG00000019039	smg7	91	61.933	ENSSHAG00000013147	SMG7	87	61.637	Sarcophilus_harrisii
ENSPREG00000019039	smg7	92	68.702	ENSSFOG00015017252	smg7	86	73.333	Scleropages_formosus
ENSPREG00000019039	smg7	92	78.261	ENSSMAG00000006067	smg7	87	79.267	Scophthalmus_maximus
ENSPREG00000019039	smg7	68	86.226	ENSSDUG00000017543	smg7	87	79.130	Seriola_dumerili
ENSPREG00000019039	smg7	91	62.500	ENSSPUG00000002064	SMG7	87	61.538	Sphenodon_punctatus
ENSPREG00000019039	smg7	91	77.432	ENSSPAG00000008733	smg7	86	78.103	Stegastes_partitus
ENSPREG00000019039	smg7	92	59.924	ENSSSCG00000015558	SMG7	87	60.152	Sus_scrofa
ENSPREG00000019039	smg7	91	61.319	ENSTGUG00000003928	SMG7	86	64.934	Taeniopygia_guttata
ENSPREG00000019039	smg7	92	69.418	ENSTNIG00000002802	smg7	87	68.920	Tetraodon_nigroviridis
ENSPREG00000019039	smg7	72	65.143	ENSTBEG00000003220	SMG7	66	65.143	Tupaia_belangeri
ENSPREG00000019039	smg7	91	60.419	ENSTTRG00000014778	SMG7	84	60.190	Tursiops_truncatus
ENSPREG00000019039	smg7	88	59.359	ENSUAMG00000017473	SMG7	86	58.738	Ursus_americanus
ENSPREG00000019039	smg7	90	58.325	ENSUMAG00000016389	SMG7	87	59.055	Ursus_maritimus
ENSPREG00000019039	smg7	92	60.227	ENSVVUG00000008976	SMG7	86	61.238	Vulpes_vulpes
ENSPREG00000019039	smg7	91	58.927	ENSXETG00000012528	smg7	87	58.537	Xenopus_tropicalis
ENSPREG00000019039	smg7	91	92.113	ENSXMAG00000007123	smg7	87	92.619	Xiphophorus_maculatus