EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

Orthologs

Description

Ensembl ID: ENSPREG00000019171 (Gene tree)
Gene ID: 103480692
Gene Symbol: ppargc1a
Alias: PGC1|gb:dq017637|ppargc1al
Full Name: PPARG coactivator 1 alpha
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 45835 bases
Position: chrLG18:16305242-16351076
Accession: 103480692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000028412	RRM_1	PF00076.22	1e-06	1	1
ENSPREP00000028383	RRM_1	PF00076.22	1.4e-06	1	1
ENSPREP00000028362	RRM_1	PF00076.22	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000028724	-	2406	XM_008435816	ENSPREP00000028412	801 (aa)	XP_008434038	-
ENSPRET00000028674	-	5863	XM_008435814	ENSPREP00000028362	1284 (aa)	XP_008434036	-
ENSPRET00000028694	-	5257	XM_008435812	ENSPREP00000028383	1082 (aa)	XP_008434034	UPI0004A23837

Gene Model

Click here to download ENSPREG00000019171's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret04371	Apelin signaling pathway	KEGG
pret04910	Insulin signaling pathway	KEGG
pret04920	Adipocytokine signaling pathway	KEGG

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000019171	ppargc1a	100	95.918	ENSAPOG00000018632	ppargc1a	99	96.680	Acanthochromis_polyacanthus
ENSPREG00000019171	ppargc1a	72	79.878	ENSAMEG00000010421	PPARGC1A	88	80.114	Ailuropoda_melanoleuca
ENSPREG00000019171	ppargc1a	100	77.873	ENSACIG00000009732	ppargc1a	100	95.851	Amphilophus_citrinellus
ENSPREG00000019171	ppargc1a	100	95.918	ENSAOCG00000006754	ppargc1a	99	96.680	Amphiprion_ocellaris
ENSPREG00000019171	ppargc1a	100	81.620	ENSAPEG00000022574	ppargc1a	99	96.680	Amphiprion_percula
ENSPREG00000019171	ppargc1a	99	94.694	ENSATEG00000016702	ppargc1a	100	95.436	Anabas_testudineus
ENSPREG00000019171	ppargc1a	70	80.606	ENSAPLG00000005303	PPARGC1A	68	80.682	Anas_platyrhynchos
ENSPREG00000019171	ppargc1a	100	53.030	ENSACAG00000000741	PPARGC1A	89	78.977	Anolis_carolinensis
ENSPREG00000019171	ppargc1a	100	53.194	ENSANAG00000035930	PPARGC1A	53	76.020	Aotus_nancymaae
ENSPREG00000019171	ppargc1a	98	94.348	ENSACLG00000001002	ppargc1a	98	95.851	Astatotilapia_calliptera
ENSPREG00000019171	ppargc1a	97	86.809	ENSAMXG00000002461	ppargc1a	88	87.349	Astyanax_mexicanus
ENSPREG00000019171	ppargc1a	100	54.790	ENSBTAG00000017024	PPARGC1A	88	78.977	Bos_taurus
ENSPREG00000019171	ppargc1a	100	54.715	ENSCAFG00000016519	PPARGC1A	88	80.114	Canis_familiaris
ENSPREG00000019171	ppargc1a	97	53.892	ENSCAFG00020027242	PPARGC1A	88	80.114	Canis_lupus_dingo
ENSPREG00000019171	ppargc1a	100	55.076	ENSCHIG00000015991	PPARGC1A	90	75.789	Capra_hircus
ENSPREG00000019171	ppargc1a	72	79.878	ENSTSYG00000010439	PPARGC1A	90	75.510	Carlito_syrichta
ENSPREG00000019171	ppargc1a	68	79.268	ENSCAPG00000005150	PPARGC1A	82	76.316	Cavia_aperea
ENSPREG00000019171	ppargc1a	70	79.268	ENSCPOG00000001518	PPARGC1A	90	76.316	Cavia_porcellus
ENSPREG00000019171	ppargc1a	100	53.749	ENSCCAG00000024681	PPARGC1A	66	70.370	Cebus_capucinus
ENSPREG00000019171	ppargc1a	100	53.078	ENSCATG00000032575	PPARGC1A	66	70.370	Cercocebus_atys
ENSPREG00000019171	ppargc1a	72	78.659	ENSCLAG00000002058	PPARGC1A	90	74.490	Chinchilla_lanigera
ENSPREG00000019171	ppargc1a	57	69.869	ENSCSAG00000016575	PPARGC1A	66	70.370	Chlorocebus_sabaeus
ENSPREG00000019171	ppargc1a	100	53.085	ENSCANG00000033426	PPARGC1A	53	76.842	Colobus_angolensis_palliatus
ENSPREG00000019171	ppargc1a	72	77.439	ENSCGRG00001015534	Ppargc1a	87	73.469	Cricetulus_griseus_chok1gshd
ENSPREG00000019171	ppargc1a	72	77.439	ENSCGRG00000000200	Ppargc1a	87	73.469	Cricetulus_griseus_crigri
ENSPREG00000019171	ppargc1a	100	94.694	ENSCSEG00000006884	ppargc1a	97	96.970	Cynoglossus_semilaevis
ENSPREG00000019171	ppargc1a	80	80.286	ENSCVAG00000016547	ppargc1a	100	84.546	Cyprinodon_variegatus
ENSPREG00000019171	ppargc1a	92	82.609	ENSDARG00000067829	ppargc1a	91	86.301	Danio_rerio
ENSPREG00000019171	ppargc1a	100	54.482	ENSDNOG00000041106	PPARGC1A	90	76.440	Dasypus_novemcinctus
ENSPREG00000019171	ppargc1a	72	78.049	ENSDORG00000016276	Ppargc1a	88	73.980	Dipodomys_ordii
ENSPREG00000019171	ppargc1a	100	54.471	ENSEASG00005007984	PPARGC1A	88	80.114	Equus_asinus_asinus
ENSPREG00000019171	ppargc1a	98	54.012	ENSECAG00000009164	PPARGC1A	86	80.114	Equus_caballus
ENSPREG00000019171	ppargc1a	98	54.350	ENSEEUG00000009219	PPARGC1A	88	78.409	Erinaceus_europaeus
ENSPREG00000019171	ppargc1a	78	90.000	ENSELUG00000017027	ppargc1a	69	90.000	Esox_lucius
ENSPREG00000019171	ppargc1a	100	54.640	ENSFCAG00000000043	PPARGC1A	88	79.545	Felis_catus
ENSPREG00000019171	ppargc1a	98	53.333	ENSFALG00000009211	PPARGC1A	67	79.545	Ficedula_albicollis
ENSPREG00000019171	ppargc1a	100	54.706	ENSFDAG00000005659	PPARGC1A	90	73.469	Fukomys_damarensis
ENSPREG00000019171	ppargc1a	99	98.340	ENSFHEG00000021990	ppargc1a	98	98.340	Fundulus_heteroclitus
ENSPREG00000019171	ppargc1a	100	54.567	ENSGALG00000042851	PPARGC1A	71	75.342	Gallus_gallus
ENSPREG00000019171	ppargc1a	99	98.340	ENSGAFG00000015514	ppargc1a	99	98.340	Gambusia_affinis
ENSPREG00000019171	ppargc1a	99	53.538	ENSGAGG00000007043	PPARGC1A	67	80.682	Gopherus_agassizii
ENSPREG00000019171	ppargc1a	100	53.194	ENSGGOG00000009810	PPARGC1A	50	79.375	Gorilla_gorilla
ENSPREG00000019171	ppargc1a	100	95.102	ENSHBUG00000005269	ppargc1a	100	96.266	Haplochromis_burtoni
ENSPREG00000019171	ppargc1a	98	53.782	ENSHGLG00000007022	PPARGC1A	89	73.469	Heterocephalus_glaber_female
ENSPREG00000019171	ppargc1a	100	54.181	ENSHGLG00100000133	PPARGC1A	90	73.469	Heterocephalus_glaber_male
ENSPREG00000019171	ppargc1a	95	91.429	ENSHCOG00000014886	ppargc1a	95	92.116	Hippocampus_comes
ENSPREG00000019171	ppargc1a	73	78.659	ENSSTOG00000012522	PPARGC1A	71	74.490	Ictidomys_tridecemlineatus
ENSPREG00000019171	ppargc1a	99	94.694	ENSKMAG00000005390	ppargc1a	95	96.491	Kryptolebias_marmoratus
ENSPREG00000019171	ppargc1a	98	95.436	ENSLBEG00000019562	ppargc1a	99	95.436	Labrus_bergylta
ENSPREG00000019171	ppargc1a	51	78.974	ENSLACG00000014054	PPARGC1A	68	79.487	Latimeria_chalumnae
ENSPREG00000019171	ppargc1a	70	58.043	ENSLOCG00000012350	ppargc1a	53	84.500	Lepisosteus_oculatus
ENSPREG00000019171	ppargc1a	100	55.307	ENSLAFG00000012981	PPARGC1A	91	73.000	Loxodonta_africana
ENSPREG00000019171	ppargc1a	100	53.078	ENSMFAG00000000534	PPARGC1A	66	70.370	Macaca_fascicularis
ENSPREG00000019171	ppargc1a	100	55.206	ENSMMUG00000001844	PPARGC1A	68	70.370	Macaca_mulatta
ENSPREG00000019171	ppargc1a	100	52.962	ENSMNEG00000028682	PPARGC1A	66	70.370	Macaca_nemestrina
ENSPREG00000019171	ppargc1a	100	53.078	ENSMLEG00000034233	PPARGC1A	66	70.370	Mandrillus_leucophaeus
ENSPREG00000019171	ppargc1a	99	95.510	ENSMAMG00000005531	ppargc1a	94	96.266	Mastacembelus_armatus
ENSPREG00000019171	ppargc1a	100	94.694	ENSMZEG00005001739	ppargc1a	100	78.571	Maylandia_zebra
ENSPREG00000019171	ppargc1a	74	81.818	ENSMGAG00000012485	PPARGC1A	68	81.818	Meleagris_gallopavo
ENSPREG00000019171	ppargc1a	72	78.049	ENSMAUG00000011811	Ppargc1a	87	73.980	Mesocricetus_auratus
ENSPREG00000019171	ppargc1a	72	79.878	ENSMICG00000015390	PPARGC1A	90	75.510	Microcebus_murinus
ENSPREG00000019171	ppargc1a	72	78.049	ENSMOCG00000008765	Ppargc1a	87	73.980	Microtus_ochrogaster
ENSPREG00000019171	ppargc1a	99	93.469	ENSMMOG00000011847	ppargc1a	94	94.606	Mola_mola
ENSPREG00000019171	ppargc1a	100	54.684	ENSMODG00000000549	PPARGC1A	87	77.436	Monodelphis_domestica
ENSPREG00000019171	ppargc1a	98	93.469	ENSMALG00000004625	ppargc1a	89	94.191	Monopterus_albus
ENSPREG00000019171	ppargc1a	72	76.220	MGP_CAROLIEiJ_G0027213	Ppargc1a	87	72.449	Mus_caroli
ENSPREG00000019171	ppargc1a	72	76.220	ENSMUSG00000029167	Ppargc1a	87	72.449	Mus_musculus
ENSPREG00000019171	ppargc1a	72	76.220	MGP_PahariEiJ_G0016995	Ppargc1a	87	72.449	Mus_pahari
ENSPREG00000019171	ppargc1a	72	75.610	MGP_SPRETEiJ_G0028208	Ppargc1a	87	71.939	Mus_spretus
ENSPREG00000019171	ppargc1a	72	79.878	ENSMPUG00000016736	PPARGC1A	88	80.114	Mustela_putorius_furo
ENSPREG00000019171	ppargc1a	100	54.482	ENSMLUG00000016307	PPARGC1A	88	79.545	Myotis_lucifugus
ENSPREG00000019171	ppargc1a	72	78.049	ENSNGAG00000015090	Ppargc1a	86	78.409	Nannospalax_galili
ENSPREG00000019171	ppargc1a	100	81.445	ENSNBRG00000023403	ppargc1a	98	96.266	Neolamprologus_brichardi
ENSPREG00000019171	ppargc1a	100	53.426	ENSNLEG00000016760	PPARGC1A	53	70.408	Nomascus_leucogenys
ENSPREG00000019171	ppargc1a	72	78.659	ENSOPRG00000012899	PPARGC1A	89	74.490	Ochotona_princeps
ENSPREG00000019171	ppargc1a	100	73.933	ENSONIG00000007635	ppargc1a	98	89.224	Oreochromis_niloticus
ENSPREG00000019171	ppargc1a	100	55.291	ENSOANG00000006680	PPARGC1A	89	77.957	Ornithorhynchus_anatinus
ENSPREG00000019171	ppargc1a	72	79.268	ENSOCUG00000014668	PPARGC1A	90	75.000	Oryctolagus_cuniculus
ENSPREG00000019171	ppargc1a	100	95.102	ENSORLG00000004788	ppargc1a	99	95.851	Oryzias_latipes
ENSPREG00000019171	ppargc1a	100	95.102	ENSORLG00020014690	ppargc1a	95	95.851	Oryzias_latipes_hni
ENSPREG00000019171	ppargc1a	100	94.694	ENSORLG00015012206	ppargc1a	99	97.368	Oryzias_latipes_hsok
ENSPREG00000019171	ppargc1a	99	94.694	ENSOMEG00000000670	ppargc1a	99	95.436	Oryzias_melastigma
ENSPREG00000019171	ppargc1a	100	54.007	ENSOGAG00000014559	PPARGC1A	90	73.980	Otolemur_garnettii
ENSPREG00000019171	ppargc1a	72	79.394	ENSOARG00000005581	PPARGC1A	86	79.545	Ovis_aries
ENSPREG00000019171	ppargc1a	100	53.310	ENSPPAG00000034694	PPARGC1A	53	75.510	Pan_paniscus
ENSPREG00000019171	ppargc1a	100	54.640	ENSPPRG00000001711	PPARGC1A	88	79.545	Panthera_pardus
ENSPREG00000019171	ppargc1a	100	54.640	ENSPTIG00000007378	PPARGC1A	88	79.545	Panthera_tigris_altaica
ENSPREG00000019171	ppargc1a	100	53.426	ENSPTRG00000015954	PPARGC1A	53	75.510	Pan_troglodytes
ENSPREG00000019171	ppargc1a	100	52.791	ENSPANG00000005420	PPARGC1A	66	70.370	Papio_anubis
ENSPREG00000019171	ppargc1a	71	75.000	ENSPKIG00000002531	ppargc1a	55	75.000	Paramormyrops_kingsleyae
ENSPREG00000019171	ppargc1a	100	53.559	ENSPSIG00000011790	PPARGC1A	86	80.114	Pelodiscus_sinensis
ENSPREG00000019171	ppargc1a	80	87.983	ENSPMGG00000019204	ppargc1a	92	88.382	Periophthalmus_magnuspinnatus
ENSPREG00000019171	ppargc1a	79	69.869	ENSPEMG00000010892	Ppargc1a	87	74.112	Peromyscus_maniculatus_bairdii
ENSPREG00000019171	ppargc1a	100	55.006	ENSPCIG00000015835	PPARGC1A	90	75.635	Phascolarctos_cinereus
ENSPREG00000019171	ppargc1a	100	84.211	ENSPFOG00000001263	ppargc1a	99	97.279	Poecilia_formosa
ENSPREG00000019171	ppargc1a	100	89.926	ENSPLAG00000002827	ppargc1a	98	100.000	Poecilia_latipinna
ENSPREG00000019171	ppargc1a	99	99.583	ENSPMEG00000000720	ppargc1a	100	97.274	Poecilia_mexicana
ENSPREG00000019171	ppargc1a	100	54.631	ENSPCAG00000016308	PPARGC1A	88	76.571	Procavia_capensis
ENSPREG00000019171	ppargc1a	79	69.432	ENSPCOG00000022858	PPARGC1A	88	80.114	Propithecus_coquereli
ENSPREG00000019171	ppargc1a	72	78.659	ENSPVAG00000004965	PPARGC1A	88	78.977	Pteropus_vampyrus
ENSPREG00000019171	ppargc1a	100	95.102	ENSPNYG00000006846	ppargc1a	100	96.266	Pundamilia_nyererei
ENSPREG00000019171	ppargc1a	97	87.234	ENSPNAG00000010393	ppargc1a	88	87.952	Pygocentrus_nattereri
ENSPREG00000019171	ppargc1a	72	76.829	ENSRNOG00000004473	Ppargc1a	87	72.959	Rattus_norvegicus
ENSPREG00000019171	ppargc1a	100	54.545	ENSRBIG00000032333	PPARGC1A	53	76.842	Rhinopithecus_bieti
ENSPREG00000019171	ppargc1a	100	54.662	ENSRROG00000010419	PPARGC1A	53	76.842	Rhinopithecus_roxellana
ENSPREG00000019171	ppargc1a	100	53.194	ENSSBOG00000006423	PPARGC1A	53	76.020	Saimiri_boliviensis_boliviensis
ENSPREG00000019171	ppargc1a	100	55.269	ENSSHAG00000010033	PPARGC1A	84	76.410	Sarcophilus_harrisii
ENSPREG00000019171	ppargc1a	100	52.771	ENSSFOG00015018522	ppargc1a	100	52.254	Scleropages_formosus
ENSPREG00000019171	ppargc1a	96	75.664	ENSSFOG00015001633	ppargc1a	85	71.542	Scleropages_formosus
ENSPREG00000019171	ppargc1a	100	93.469	ENSSMAG00000011571	ppargc1a	96	96.053	Scophthalmus_maximus
ENSPREG00000019171	ppargc1a	100	78.402	ENSSDUG00000007408	ppargc1a	97	97.403	Seriola_dumerili
ENSPREG00000019171	ppargc1a	100	75.634	ENSSLDG00000006987	ppargc1a	93	96.266	Seriola_lalandi_dorsalis
ENSPREG00000019171	ppargc1a	89	76.800	ENSSARG00000000575	PPARGC1A	88	67.635	Sorex_araneus
ENSPREG00000019171	ppargc1a	100	53.746	ENSSPUG00000013556	PPARGC1A	86	81.250	Sphenodon_punctatus
ENSPREG00000019171	ppargc1a	98	95.652	ENSSPAG00000023514	ppargc1a	99	96.680	Stegastes_partitus
ENSPREG00000019171	ppargc1a	73	79.878	ENSSSCG00000029275	PPARGC1A	88	80.114	Sus_scrofa
ENSPREG00000019171	ppargc1a	100	53.712	ENSTGUG00000009487	PPARGC1A	70	80.682	Taeniopygia_guttata
ENSPREG00000019171	ppargc1a	89	90.000	ENSTRUG00000007210	ppargc1a	85	90.361	Takifugu_rubripes
ENSPREG00000019171	ppargc1a	100	54.737	ENSTTRG00000005327	PPARGC1A	87	80.000	Tursiops_truncatus
ENSPREG00000019171	ppargc1a	68	79.141	ENSUAMG00000020843	PPARGC1A	86	80.114	Ursus_americanus
ENSPREG00000019171	ppargc1a	72	79.878	ENSUMAG00000003557	PPARGC1A	88	80.114	Ursus_maritimus
ENSPREG00000019171	ppargc1a	66	79.394	ENSVPAG00000003478	PPARGC1A	88	79.545	Vicugna_pacos
ENSPREG00000019171	ppargc1a	100	54.715	ENSVVUG00000013365	PPARGC1A	88	80.114	Vulpes_vulpes
ENSPREG00000019171	ppargc1a	100	52.625	ENSXETG00000020468	ppargc1a	76	78.977	Xenopus_tropicalis
ENSPREG00000019171	ppargc1a	98	99.583	ENSXCOG00000004835	ppargc1a	94	99.585	Xiphophorus_couchianus
ENSPREG00000019171	ppargc1a	99	99.167	ENSXMAG00000007748	ppargc1a	100	96.028	Xiphophorus_maculatus