EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000019652 (Gene tree)
Gene ID: 103481892
Gene Symbol: sf3b1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 19587 bases
Position: chrLG2:23304969-23324555
Accession: 103481892
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000029090	SF3b1	PF08920.10	1.1e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000029411	-	8215	XM_008437689	ENSPREP00000029090	1315 (aa)	XP_008435911	UPI0004A2D9E0

Gene Model

Click here to download ENSPREG00000019652's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000019652's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000019652	sf3b1	100	93.470	ENSG00000115524	SF3B1	100	93.470	Homo_sapiens
ENSPREG00000019652	sf3b1	100	98.708	ENSAPOG00000011894	sf3b1	100	98.708	Acanthochromis_polyacanthus
ENSPREG00000019652	sf3b1	99	93.354	ENSAMEG00000013809	SF3B1	99	93.354	Ailuropoda_melanoleuca
ENSPREG00000019652	sf3b1	100	97.643	ENSACIG00000020910	sf3b1	97	97.643	Amphilophus_citrinellus
ENSPREG00000019652	sf3b1	100	98.708	ENSAOCG00000004478	sf3b1	100	98.708	Amphiprion_ocellaris
ENSPREG00000019652	sf3b1	100	98.708	ENSAPEG00000012937	sf3b1	100	98.708	Amphiprion_percula
ENSPREG00000019652	sf3b1	100	98.783	ENSATEG00000020435	sf3b1	100	98.783	Anabas_testudineus
ENSPREG00000019652	sf3b1	99	93.798	ENSAPLG00000003993	SF3B1	99	93.798	Anas_platyrhynchos
ENSPREG00000019652	sf3b1	100	93.617	ENSACAG00000009612	SF3B1	100	93.617	Anolis_carolinensis
ENSPREG00000019652	sf3b1	100	93.470	ENSANAG00000021577	SF3B1	100	94.777	Aotus_nancymaae
ENSPREG00000019652	sf3b1	100	97.567	ENSACLG00000023470	sf3b1	100	97.567	Astatotilapia_calliptera
ENSPREG00000019652	sf3b1	100	97.039	ENSAMXG00000002219	sf3b1	100	97.039	Astyanax_mexicanus
ENSPREG00000019652	sf3b1	100	93.470	ENSBTAG00000008915	SF3B1	100	93.470	Bos_taurus
ENSPREG00000019652	sf3b1	99	64.649	WBGene00011605	sftb-1	99	64.797	Caenorhabditis_elegans
ENSPREG00000019652	sf3b1	100	93.470	ENSCJAG00000003902	SF3B1	100	93.470	Callithrix_jacchus
ENSPREG00000019652	sf3b1	100	93.470	ENSCAFG00000010826	SF3B1	100	93.470	Canis_familiaris
ENSPREG00000019652	sf3b1	100	93.470	ENSCAFG00020004750	SF3B1	100	93.470	Canis_lupus_dingo
ENSPREG00000019652	sf3b1	100	93.470	ENSCHIG00000015226	SF3B1	100	93.470	Capra_hircus
ENSPREG00000019652	sf3b1	100	93.394	ENSTSYG00000009214	SF3B1	100	93.394	Carlito_syrichta
ENSPREG00000019652	sf3b1	99	93.298	ENSCAPG00000006547	SF3B1	99	93.298	Cavia_aperea
ENSPREG00000019652	sf3b1	99	93.420	ENSCPOG00000009353	SF3B1	100	93.420	Cavia_porcellus
ENSPREG00000019652	sf3b1	100	93.470	ENSCCAG00000020506	SF3B1	100	93.470	Cebus_capucinus
ENSPREG00000019652	sf3b1	100	93.470	ENSCATG00000035735	SF3B1	100	93.470	Cercocebus_atys
ENSPREG00000019652	sf3b1	99	93.425	ENSCLAG00000014767	SF3B1	99	93.425	Chinchilla_lanigera
ENSPREG00000019652	sf3b1	100	93.470	ENSCSAG00000011505	SF3B1	100	93.470	Chlorocebus_sabaeus
ENSPREG00000019652	sf3b1	76	92.474	ENSCHOG00000009860	SF3B1	76	92.474	Choloepus_hoffmanni
ENSPREG00000019652	sf3b1	100	93.764	ENSCPBG00000021902	SF3B1	99	94.865	Chrysemys_picta_bellii
ENSPREG00000019652	sf3b1	68	78.299	ENSCING00000002558	-	99	78.738	Ciona_intestinalis
ENSPREG00000019652	sf3b1	99	80.135	ENSCSAVG00000002559	-	99	80.135	Ciona_savignyi
ENSPREG00000019652	sf3b1	100	93.470	ENSCANG00000029415	SF3B1	100	93.470	Colobus_angolensis_palliatus
ENSPREG00000019652	sf3b1	100	93.470	ENSCGRG00001016990	Sf3b1	100	93.470	Cricetulus_griseus_chok1gshd
ENSPREG00000019652	sf3b1	100	93.470	ENSCGRG00000005301	Sf3b1	100	93.470	Cricetulus_griseus_crigri
ENSPREG00000019652	sf3b1	100	94.068	ENSCSEG00000003860	sf3b1	100	94.068	Cynoglossus_semilaevis
ENSPREG00000019652	sf3b1	96	99.604	ENSCVAG00000003680	sf3b1	99	99.604	Cyprinodon_variegatus
ENSPREG00000019652	sf3b1	100	96.122	ENSDARG00000056138	sf3b1	100	96.122	Danio_rerio
ENSPREG00000019652	sf3b1	100	93.399	ENSDNOG00000011754	SF3B1	100	93.399	Dasypus_novemcinctus
ENSPREG00000019652	sf3b1	99	91.507	ENSDORG00000002399	Sf3b1	100	91.431	Dipodomys_ordii
ENSPREG00000019652	sf3b1	100	75.806	FBgn0031266	Sf3b1	100	75.806	Drosophila_melanogaster
ENSPREG00000019652	sf3b1	83	92.301	ENSETEG00000009188	SF3B1	100	92.301	Echinops_telfairi
ENSPREG00000019652	sf3b1	99	85.889	ENSEBUG00000004325	sf3b1	100	88.544	Eptatretus_burgeri
ENSPREG00000019652	sf3b1	100	93.470	ENSEASG00005020159	SF3B1	98	93.470	Equus_asinus_asinus
ENSPREG00000019652	sf3b1	100	93.470	ENSECAG00000021657	SF3B1	98	93.470	Equus_caballus
ENSPREG00000019652	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSPREG00000019652	sf3b1	100	96.224	ENSELUG00000005977	sf3b1	98	96.224	Esox_lucius
ENSPREG00000019652	sf3b1	100	93.470	ENSFCAG00000005038	SF3B1	100	93.470	Felis_catus
ENSPREG00000019652	sf3b1	99	93.721	ENSFALG00000004281	SF3B1	99	93.721	Ficedula_albicollis
ENSPREG00000019652	sf3b1	100	93.470	ENSFDAG00000017510	SF3B1	100	93.470	Fukomys_damarensis
ENSPREG00000019652	sf3b1	100	98.403	ENSFHEG00000014333	sf3b1	100	98.403	Fundulus_heteroclitus
ENSPREG00000019652	sf3b1	100	95.599	ENSGMOG00000006773	sf3b1	100	95.979	Gadus_morhua
ENSPREG00000019652	sf3b1	100	93.840	ENSGALG00000008038	SF3B1	100	93.840	Gallus_gallus
ENSPREG00000019652	sf3b1	98	99.691	ENSGAFG00000000704	sf3b1	100	99.691	Gambusia_affinis
ENSPREG00000019652	sf3b1	100	96.963	ENSGACG00000008839	sf3b1	100	96.963	Gasterosteus_aculeatus
ENSPREG00000019652	sf3b1	100	93.127	ENSGAGG00000017478	SF3B1	100	93.127	Gopherus_agassizii
ENSPREG00000019652	sf3b1	99	88.141	ENSGGOG00000009264	SF3B1	99	88.217	Gorilla_gorilla
ENSPREG00000019652	sf3b1	99	97.639	ENSHBUG00000007705	sf3b1	99	97.639	Haplochromis_burtoni
ENSPREG00000019652	sf3b1	99	93.425	ENSHGLG00000008285	-	99	93.425	Heterocephalus_glaber_female
ENSPREG00000019652	sf3b1	99	91.437	ENSHGLG00100005535	-	99	91.437	Heterocephalus_glaber_male
ENSPREG00000019652	sf3b1	100	97.352	ENSHCOG00000016775	sf3b1	100	97.352	Hippocampus_comes
ENSPREG00000019652	sf3b1	100	96.733	ENSIPUG00000013171	sf3b1	100	96.733	Ictalurus_punctatus
ENSPREG00000019652	sf3b1	100	93.470	ENSSTOG00000011034	SF3B1	100	93.470	Ictidomys_tridecemlineatus
ENSPREG00000019652	sf3b1	99	93.400	ENSJJAG00000010903	Sf3b1	99	93.400	Jaculus_jaculus
ENSPREG00000019652	sf3b1	100	97.953	ENSKMAG00000004009	sf3b1	100	97.953	Kryptolebias_marmoratus
ENSPREG00000019652	sf3b1	100	97.110	ENSLBEG00000022208	sf3b1	100	97.110	Labrus_bergylta
ENSPREG00000019652	sf3b1	99	90.350	ENSLACG00000014832	SF3B1	99	90.426	Latimeria_chalumnae
ENSPREG00000019652	sf3b1	100	95.461	ENSLOCG00000003899	sf3b1	100	95.461	Lepisosteus_oculatus
ENSPREG00000019652	sf3b1	100	93.470	ENSLAFG00000001956	SF3B1	100	93.470	Loxodonta_africana
ENSPREG00000019652	sf3b1	99	93.425	ENSMMUG00000022430	SF3B1	99	93.425	Macaca_mulatta
ENSPREG00000019652	sf3b1	100	93.470	ENSMNEG00000042333	SF3B1	100	94.777	Macaca_nemestrina
ENSPREG00000019652	sf3b1	94	88.719	ENSMLEG00000026141	SF3B1	98	88.647	Mandrillus_leucophaeus
ENSPREG00000019652	sf3b1	100	98.555	ENSMAMG00000010241	sf3b1	100	98.555	Mastacembelus_armatus
ENSPREG00000019652	sf3b1	100	97.567	ENSMZEG00005021254	sf3b1	100	97.567	Maylandia_zebra
ENSPREG00000019652	sf3b1	99	93.185	ENSMGAG00000007017	SF3B1	99	93.185	Meleagris_gallopavo
ENSPREG00000019652	sf3b1	99	89.220	ENSMAUG00000009071	Sf3b1	99	89.220	Mesocricetus_auratus
ENSPREG00000019652	sf3b1	100	93.470	ENSMICG00000013879	SF3B1	100	93.470	Microcebus_murinus
ENSPREG00000019652	sf3b1	99	89.152	ENSMOCG00000000455	Sf3b1	99	89.152	Microtus_ochrogaster
ENSPREG00000019652	sf3b1	84	97.818	ENSMMOG00000000475	sf3b1	100	97.818	Mola_mola
ENSPREG00000019652	sf3b1	100	93.014	ENSMODG00000012275	SF3B1	100	93.014	Monodelphis_domestica
ENSPREG00000019652	sf3b1	100	98.327	ENSMALG00000017211	sf3b1	100	98.327	Monopterus_albus
ENSPREG00000019652	sf3b1	100	93.470	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.470	Mus_caroli
ENSPREG00000019652	sf3b1	100	93.470	ENSMUSG00000025982	Sf3b1	100	93.470	Mus_musculus
ENSPREG00000019652	sf3b1	100	93.470	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.470	Mus_spretus
ENSPREG00000019652	sf3b1	100	93.470	ENSMPUG00000007799	SF3B1	100	93.470	Mustela_putorius_furo
ENSPREG00000019652	sf3b1	100	92.331	ENSMLUG00000000840	SF3B1	100	92.331	Myotis_lucifugus
ENSPREG00000019652	sf3b1	99	93.145	ENSNGAG00000021884	-	100	93.145	Nannospalax_galili
ENSPREG00000019652	sf3b1	100	92.564	ENSNBRG00000015816	sf3b1	100	92.629	Neolamprologus_brichardi
ENSPREG00000019652	sf3b1	100	93.470	ENSNLEG00000006861	SF3B1	100	93.470	Nomascus_leucogenys
ENSPREG00000019652	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSPREG00000019652	sf3b1	100	80.981	ENSOPRG00000008596	SF3B1	100	81.129	Ochotona_princeps
ENSPREG00000019652	sf3b1	100	93.470	ENSODEG00000011153	-	100	93.470	Octodon_degus
ENSPREG00000019652	sf3b1	100	97.567	ENSONIG00000013758	sf3b1	100	97.567	Oreochromis_niloticus
ENSPREG00000019652	sf3b1	82	95.849	ENSOCUG00000012722	-	96	95.849	Oryctolagus_cuniculus
ENSPREG00000019652	sf3b1	100	98.175	ENSORLG00000020219	sf3b1	100	98.175	Oryzias_latipes
ENSPREG00000019652	sf3b1	100	98.175	ENSORLG00020001746	sf3b1	100	98.175	Oryzias_latipes_hni
ENSPREG00000019652	sf3b1	64	96.801	ENSORLG00015001759	sf3b1	98	96.801	Oryzias_latipes_hsok
ENSPREG00000019652	sf3b1	100	98.479	ENSOMEG00000019231	sf3b1	100	98.479	Oryzias_melastigma
ENSPREG00000019652	sf3b1	100	93.470	ENSOARG00000015374	SF3B1	100	93.470	Ovis_aries
ENSPREG00000019652	sf3b1	100	93.470	ENSPPAG00000035007	SF3B1	100	93.470	Pan_paniscus
ENSPREG00000019652	sf3b1	100	93.470	ENSPPRG00000009090	SF3B1	100	93.470	Panthera_pardus
ENSPREG00000019652	sf3b1	100	93.470	ENSPTIG00000021557	SF3B1	100	93.470	Panthera_tigris_altaica
ENSPREG00000019652	sf3b1	99	86.194	ENSPTRG00000012771	SF3B1	99	86.194	Pan_troglodytes
ENSPREG00000019652	sf3b1	100	93.470	ENSPANG00000013417	SF3B1	100	93.470	Papio_anubis
ENSPREG00000019652	sf3b1	100	96.055	ENSPKIG00000000784	sf3b1	100	96.055	Paramormyrops_kingsleyae
ENSPREG00000019652	sf3b1	99	92.567	ENSPSIG00000017222	SF3B1	98	92.567	Pelodiscus_sinensis
ENSPREG00000019652	sf3b1	91	97.565	ENSPMGG00000004330	sf3b1	99	97.565	Periophthalmus_magnuspinnatus
ENSPREG00000019652	sf3b1	99	93.425	ENSPEMG00000010699	Sf3b1	100	93.425	Peromyscus_maniculatus_bairdii
ENSPREG00000019652	sf3b1	100	88.889	ENSPMAG00000001311	sf3b1	100	89.191	Petromyzon_marinus
ENSPREG00000019652	sf3b1	100	93.014	ENSPCIG00000010642	SF3B1	100	93.014	Phascolarctos_cinereus
ENSPREG00000019652	sf3b1	100	99.772	ENSPFOG00000000073	sf3b1	100	99.772	Poecilia_formosa
ENSPREG00000019652	sf3b1	100	99.772	ENSPLAG00000002293	sf3b1	100	99.772	Poecilia_latipinna
ENSPREG00000019652	sf3b1	100	99.848	ENSPMEG00000000446	sf3b1	98	99.848	Poecilia_mexicana
ENSPREG00000019652	sf3b1	82	96.768	ENSPPYG00000013044	SF3B1	95	96.768	Pongo_abelii
ENSPREG00000019652	sf3b1	100	93.318	ENSPCAG00000009292	SF3B1	100	93.318	Procavia_capensis
ENSPREG00000019652	sf3b1	100	93.470	ENSPCOG00000024074	SF3B1	100	93.470	Propithecus_coquereli
ENSPREG00000019652	sf3b1	100	93.470	ENSPVAG00000008302	SF3B1	100	93.470	Pteropus_vampyrus
ENSPREG00000019652	sf3b1	100	97.490	ENSPNYG00000014939	sf3b1	100	97.490	Pundamilia_nyererei
ENSPREG00000019652	sf3b1	100	97.039	ENSPNAG00000008288	sf3b1	100	97.039	Pygocentrus_nattereri
ENSPREG00000019652	sf3b1	100	93.470	ENSRNOG00000013516	Sf3b1	100	93.470	Rattus_norvegicus
ENSPREG00000019652	sf3b1	99	89.734	ENSRBIG00000026096	SF3B1	100	89.734	Rhinopithecus_bieti
ENSPREG00000019652	sf3b1	100	93.470	ENSRROG00000031308	SF3B1	100	93.470	Rhinopithecus_roxellana
ENSPREG00000019652	sf3b1	100	93.470	ENSSBOG00000020080	SF3B1	100	93.470	Saimiri_boliviensis_boliviensis
ENSPREG00000019652	sf3b1	100	93.014	ENSSHAG00000017564	SF3B1	100	93.014	Sarcophilus_harrisii
ENSPREG00000019652	sf3b1	100	96.429	ENSSFOG00015021535	sf3b1	100	96.429	Scleropages_formosus
ENSPREG00000019652	sf3b1	99	97.572	ENSSMAG00000013977	sf3b1	99	97.572	Scophthalmus_maximus
ENSPREG00000019652	sf3b1	100	98.783	ENSSDUG00000017422	sf3b1	100	98.783	Seriola_dumerili
ENSPREG00000019652	sf3b1	100	98.859	ENSSLDG00000019495	sf3b1	100	98.859	Seriola_lalandi_dorsalis
ENSPREG00000019652	sf3b1	75	98.592	ENSSARG00000007016	SF3B1	75	98.592	Sorex_araneus
ENSPREG00000019652	sf3b1	100	93.460	ENSSPUG00000000410	SF3B1	100	93.460	Sphenodon_punctatus
ENSPREG00000019652	sf3b1	100	98.555	ENSSPAG00000010451	sf3b1	99	98.555	Stegastes_partitus
ENSPREG00000019652	sf3b1	91	93.095	ENSSSCG00000016075	SF3B1	100	94.777	Sus_scrofa
ENSPREG00000019652	sf3b1	100	93.840	ENSTGUG00000010553	SF3B1	100	93.840	Taeniopygia_guttata
ENSPREG00000019652	sf3b1	100	97.871	ENSTRUG00000015534	sf3b1	100	97.871	Takifugu_rubripes
ENSPREG00000019652	sf3b1	84	97.004	ENSTBEG00000008714	SF3B1	93	97.004	Tupaia_belangeri
ENSPREG00000019652	sf3b1	92	93.173	ENSTTRG00000003414	SF3B1	92	93.173	Tursiops_truncatus
ENSPREG00000019652	sf3b1	84	97.571	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSPREG00000019652	sf3b1	100	93.470	ENSUMAG00000020945	SF3B1	100	93.470	Ursus_maritimus
ENSPREG00000019652	sf3b1	95	93.268	ENSVPAG00000005798	SF3B1	96	93.268	Vicugna_pacos
ENSPREG00000019652	sf3b1	100	93.470	ENSVVUG00000025948	SF3B1	95	93.470	Vulpes_vulpes
ENSPREG00000019652	sf3b1	100	92.027	ENSXETG00000013339	sf3b1	100	92.027	Xenopus_tropicalis
ENSPREG00000019652	sf3b1	100	95.133	ENSXCOG00000018086	sf3b1	100	95.437	Xiphophorus_couchianus
ENSPREG00000019652	sf3b1	100	99.696	ENSXMAG00000007369	sf3b1	100	99.696	Xiphophorus_maculatus