EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000021147 (Gene tree)
Gene ID: 103478843
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 22262 bases
Position: chrLG17:477980-500241
Accession: 103478843
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000031314	XRN_N	PF03159.18	2.6e-95	1	1
ENSPREP00000031261	XRN_N	PF03159.18	5.5e-95	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000031672	-	4860	-	ENSPREP00000031314	1619 (aa)	-	-
ENSPRET00000031619	-	6289	XM_008432919	ENSPREP00000031261	1705 (aa)	XP_008431141	UPI0004A430F3

Gene Model

Click here to download ENSPREG00000021147's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03008	Ribosome biogenesis in eukaryotes	KEGG
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000021147's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000021147	xrn1	100	60.912	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSPREG00000021147	xrn1	100	79.456	ENSAPOG00000000622	xrn1	100	79.529	Acanthochromis_polyacanthus
ENSPREG00000021147	xrn1	96	69.418	ENSAMEG00000012538	XRN1	95	69.497	Ailuropoda_melanoleuca
ENSPREG00000021147	xrn1	100	80.397	ENSACIG00000001057	xrn1	99	84.735	Amphilophus_citrinellus
ENSPREG00000021147	xrn1	100	80.707	ENSAOCG00000014097	xrn1	100	80.185	Amphiprion_ocellaris
ENSPREG00000021147	xrn1	100	83.169	ENSAPEG00000006620	xrn1	100	82.995	Amphiprion_percula
ENSPREG00000021147	xrn1	98	82.850	ENSATEG00000009752	xrn1	99	82.537	Anabas_testudineus
ENSPREG00000021147	xrn1	99	60.169	ENSAPLG00000004905	XRN1	100	60.237	Anas_platyrhynchos
ENSPREG00000021147	xrn1	100	67.739	ENSACAG00000004985	XRN1	97	67.893	Anolis_carolinensis
ENSPREG00000021147	xrn1	100	61.292	ENSANAG00000029013	XRN1	99	72.743	Aotus_nancymaae
ENSPREG00000021147	xrn1	100	82.616	ENSACLG00000004806	xrn1	99	82.305	Astatotilapia_calliptera
ENSPREG00000021147	xrn1	100	68.260	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSPREG00000021147	xrn1	100	61.303	ENSBTAG00000011524	XRN1	100	60.271	Bos_taurus
ENSPREG00000021147	xrn1	73	37.023	WBGene00012730	xrn-1	80	37.167	Caenorhabditis_elegans
ENSPREG00000021147	xrn1	100	61.095	ENSCJAG00000001872	XRN1	99	62.270	Callithrix_jacchus
ENSPREG00000021147	xrn1	96	69.819	ENSCAFG00000007783	XRN1	96	70.055	Canis_familiaris
ENSPREG00000021147	xrn1	96	69.819	ENSCAFG00020009120	XRN1	99	75.743	Canis_lupus_dingo
ENSPREG00000021147	xrn1	97	69.267	ENSCHIG00000019192	XRN1	94	69.541	Capra_hircus
ENSPREG00000021147	xrn1	100	61.063	ENSTSYG00000002705	XRN1	100	60.546	Carlito_syrichta
ENSPREG00000021147	xrn1	51	85.116	ENSCAPG00000004604	-	94	85.116	Cavia_aperea
ENSPREG00000021147	xrn1	100	61.257	ENSCCAG00000034800	XRN1	99	77.287	Cebus_capucinus
ENSPREG00000021147	xrn1	100	59.988	ENSCATG00000041794	XRN1	100	60.763	Cercocebus_atys
ENSPREG00000021147	xrn1	100	61.176	ENSCLAG00000001451	XRN1	99	78.233	Chinchilla_lanigera
ENSPREG00000021147	xrn1	100	59.486	ENSCSAG00000011265	XRN1	100	60.508	Chlorocebus_sabaeus
ENSPREG00000021147	xrn1	54	94.805	ENSCHOG00000013961	-	53	94.805	Choloepus_hoffmanni
ENSPREG00000021147	xrn1	71	49.197	ENSCSAVG00000008584	-	91	49.850	Ciona_savignyi
ENSPREG00000021147	xrn1	97	62.118	ENSCANG00000037495	XRN1	99	77.287	Colobus_angolensis_palliatus
ENSPREG00000021147	xrn1	100	59.989	ENSCGRG00001019411	Xrn1	99	77.603	Cricetulus_griseus_chok1gshd
ENSPREG00000021147	xrn1	100	59.989	ENSCGRG00000012464	Xrn1	99	77.603	Cricetulus_griseus_crigri
ENSPREG00000021147	xrn1	100	69.301	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSPREG00000021147	xrn1	69	88.455	ENSCVAG00000013089	xrn1	99	88.987	Cyprinodon_variegatus
ENSPREG00000021147	xrn1	100	70.419	ENSDARG00000091652	xrn1	98	81.551	Danio_rerio
ENSPREG00000021147	xrn1	100	60.916	ENSDORG00000013833	Xrn1	100	61.002	Dipodomys_ordii
ENSPREG00000021147	xrn1	72	40.794	FBgn0020261	pcm	71	41.265	Drosophila_melanogaster
ENSPREG00000021147	xrn1	86	69.369	ENSETEG00000003978	XRN1	88	70.248	Echinops_telfairi
ENSPREG00000021147	xrn1	93	71.358	ENSEASG00005002687	XRN1	99	78.268	Equus_asinus_asinus
ENSPREG00000021147	xrn1	100	61.303	ENSECAG00000008301	XRN1	100	61.460	Equus_caballus
ENSPREG00000021147	xrn1	86	71.216	ENSEEUG00000011323	XRN1	87	70.899	Erinaceus_europaeus
ENSPREG00000021147	xrn1	100	71.888	ENSELUG00000000169	xrn1	100	71.708	Esox_lucius
ENSPREG00000021147	xrn1	97	58.627	ENSFCAG00000027589	XRN1	99	79.654	Felis_catus
ENSPREG00000021147	xrn1	97	69.339	ENSFALG00000007021	XRN1	94	69.464	Ficedula_albicollis
ENSPREG00000021147	xrn1	99	69.479	ENSFDAG00000020494	XRN1	99	77.918	Fukomys_damarensis
ENSPREG00000021147	xrn1	92	74.053	ENSGMOG00000006396	xrn1	88	74.489	Gadus_morhua
ENSPREG00000021147	xrn1	99	68.779	ENSGALG00000002706	XRN1	96	69.410	Gallus_gallus
ENSPREG00000021147	xrn1	100	76.161	ENSGACG00000014328	xrn1	100	75.510	Gasterosteus_aculeatus
ENSPREG00000021147	xrn1	94	68.238	ENSGAGG00000017535	XRN1	95	68.624	Gopherus_agassizii
ENSPREG00000021147	xrn1	100	61.140	ENSGGOG00000008047	XRN1	100	60.820	Gorilla_gorilla
ENSPREG00000021147	xrn1	100	79.638	ENSHBUG00000005908	xrn1	99	79.381	Haplochromis_burtoni
ENSPREG00000021147	xrn1	100	61.229	ENSHGLG00000014476	XRN1	99	77.760	Heterocephalus_glaber_female
ENSPREG00000021147	xrn1	100	61.229	ENSHGLG00100015130	XRN1	99	77.760	Heterocephalus_glaber_male
ENSPREG00000021147	xrn1	94	82.899	ENSHCOG00000014062	xrn1	99	82.818	Hippocampus_comes
ENSPREG00000021147	xrn1	100	69.076	ENSIPUG00000015229	xrn1	100	69.039	Ictalurus_punctatus
ENSPREG00000021147	xrn1	99	69.953	ENSSTOG00000013552	XRN1	99	77.287	Ictidomys_tridecemlineatus
ENSPREG00000021147	xrn1	98	60.080	ENSJJAG00000010863	Xrn1	99	77.340	Jaculus_jaculus
ENSPREG00000021147	xrn1	100	77.616	ENSKMAG00000021356	xrn1	95	84.167	Kryptolebias_marmoratus
ENSPREG00000021147	xrn1	100	76.888	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSPREG00000021147	xrn1	100	62.282	ENSLACG00000009020	XRN1	100	61.577	Latimeria_chalumnae
ENSPREG00000021147	xrn1	100	72.699	ENSLOCG00000007944	xrn1	98	72.798	Lepisosteus_oculatus
ENSPREG00000021147	xrn1	64	71.201	ENSLAFG00000015426	XRN1	99	73.228	Loxodonta_africana
ENSPREG00000021147	xrn1	100	60.427	ENSMFAG00000032599	XRN1	100	60.763	Macaca_fascicularis
ENSPREG00000021147	xrn1	100	59.931	ENSMMUG00000014038	XRN1	100	60.763	Macaca_mulatta
ENSPREG00000021147	xrn1	100	60.485	ENSMNEG00000034217	XRN1	100	60.706	Macaca_nemestrina
ENSPREG00000021147	xrn1	95	85.333	ENSMAMG00000013219	xrn1	99	85.098	Mastacembelus_armatus
ENSPREG00000021147	xrn1	100	82.500	ENSMZEG00005015099	xrn1	99	82.189	Maylandia_zebra
ENSPREG00000021147	xrn1	99	59.752	ENSMGAG00000006333	XRN1	100	59.842	Meleagris_gallopavo
ENSPREG00000021147	xrn1	100	61.202	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSPREG00000021147	xrn1	59	75.119	ENSMOCG00000008665	Xrn1	99	77.603	Microtus_ochrogaster
ENSPREG00000021147	xrn1	100	60.260	ENSMODG00000021236	XRN1	100	60.350	Monodelphis_domestica
ENSPREG00000021147	xrn1	100	75.194	ENSMALG00000004098	xrn1	100	75.284	Monopterus_albus
ENSPREG00000021147	xrn1	96	78.165	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSPREG00000021147	xrn1	100	60.604	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSPREG00000021147	xrn1	99	69.479	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSPREG00000021147	xrn1	100	60.604	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSPREG00000021147	xrn1	100	60.046	ENSMPUG00000012040	XRN1	100	60.787	Mustela_putorius_furo
ENSPREG00000021147	xrn1	100	60.559	ENSMLUG00000016885	XRN1	100	60.134	Myotis_lucifugus
ENSPREG00000021147	xrn1	56	73.502	ENSNGAG00000023964	Xrn1	99	73.502	Nannospalax_galili
ENSPREG00000021147	xrn1	100	60.419	ENSNLEG00000004726	XRN1	100	60.672	Nomascus_leucogenys
ENSPREG00000021147	xrn1	66	95.876	ENSMEUG00000014473	-	64	96.117	Notamacropus_eugenii
ENSPREG00000021147	xrn1	71	68.613	ENSOPRG00000007337	-	63	68.613	Ochotona_princeps
ENSPREG00000021147	xrn1	100	84.882	ENSONIG00000016673	xrn1	99	84.804	Oreochromis_niloticus
ENSPREG00000021147	xrn1	89	66.375	ENSOANG00000006735	XRN1	93	66.667	Ornithorhynchus_anatinus
ENSPREG00000021147	xrn1	99	69.865	ENSOCUG00000001861	XRN1	96	70.048	Oryctolagus_cuniculus
ENSPREG00000021147	xrn1	100	80.722	ENSORLG00000013005	xrn1	98	80.023	Oryzias_latipes
ENSPREG00000021147	xrn1	100	80.547	ENSORLG00020005559	xrn1	100	79.849	Oryzias_latipes_hni
ENSPREG00000021147	xrn1	100	79.965	ENSORLG00015022523	xrn1	100	79.441	Oryzias_latipes_hsok
ENSPREG00000021147	xrn1	94	87.531	ENSOMEG00000015397	xrn1	99	86.716	Oryzias_melastigma
ENSPREG00000021147	xrn1	100	59.864	ENSOGAG00000000170	XRN1	100	59.266	Otolemur_garnettii
ENSPREG00000021147	xrn1	97	69.346	ENSOARG00000006343	XRN1	94	69.541	Ovis_aries
ENSPREG00000021147	xrn1	100	61.254	ENSPPAG00000010180	XRN1	100	60.579	Pan_paniscus
ENSPREG00000021147	xrn1	97	62.081	ENSPPRG00000007125	XRN1	100	61.266	Panthera_pardus
ENSPREG00000021147	xrn1	97	62.022	ENSPTIG00000021081	XRN1	100	60.909	Panthera_tigris_altaica
ENSPREG00000021147	xrn1	100	61.254	ENSPTRG00000015482	XRN1	100	60.579	Pan_troglodytes
ENSPREG00000021147	xrn1	100	61.209	ENSPANG00000010638	XRN1	100	60.706	Papio_anubis
ENSPREG00000021147	xrn1	99	69.333	ENSPSIG00000018050	XRN1	96	69.429	Pelodiscus_sinensis
ENSPREG00000021147	xrn1	59	84.911	ENSPMGG00000002648	xrn1	99	85.918	Periophthalmus_magnuspinnatus
ENSPREG00000021147	xrn1	59	75.119	ENSPEMG00000020610	Xrn1	99	77.445	Peromyscus_maniculatus_bairdii
ENSPREG00000021147	xrn1	68	49.242	ENSPMAG00000002975	xrn1	90	76.437	Petromyzon_marinus
ENSPREG00000021147	xrn1	100	69.141	ENSPCIG00000028735	XRN1	99	77.567	Phascolarctos_cinereus
ENSPREG00000021147	xrn1	90	97.724	ENSPFOG00000013932	xrn1	99	97.724	Poecilia_formosa
ENSPREG00000021147	xrn1	90	97.398	ENSPLAG00000021653	xrn1	99	97.398	Poecilia_latipinna
ENSPREG00000021147	xrn1	88	97.935	ENSPMEG00000003076	xrn1	95	97.935	Poecilia_mexicana
ENSPREG00000021147	xrn1	100	60.894	ENSPPYG00000014172	XRN1	100	60.135	Pongo_abelii
ENSPREG00000021147	xrn1	88	59.574	ENSPCAG00000005638	XRN1	96	60.066	Procavia_capensis
ENSPREG00000021147	xrn1	100	60.897	ENSPCOG00000013089	XRN1	99	77.287	Propithecus_coquereli
ENSPREG00000021147	xrn1	84	84.971	ENSPVAG00000016265	XRN1	86	84.971	Pteropus_vampyrus
ENSPREG00000021147	xrn1	100	81.399	ENSPNYG00000010570	xrn1	99	81.086	Pundamilia_nyererei
ENSPREG00000021147	xrn1	100	67.841	ENSPNAG00000023531	xrn1	100	67.667	Pygocentrus_nattereri
ENSPREG00000021147	xrn1	99	69.383	ENSRNOG00000042951	Xrn1	95	69.383	Rattus_norvegicus
ENSPREG00000021147	xrn1	100	59.439	ENSRBIG00000041227	XRN1	100	60.272	Rhinopithecus_bieti
ENSPREG00000021147	xrn1	71	51.902	YGL173C	XRN1	76	50.758	Saccharomyces_cerevisiae
ENSPREG00000021147	xrn1	100	61.121	ENSSBOG00000029561	XRN1	100	60.842	Saimiri_boliviensis_boliviensis
ENSPREG00000021147	xrn1	99	59.920	ENSSHAG00000016207	XRN1	100	59.932	Sarcophilus_harrisii
ENSPREG00000021147	xrn1	100	67.861	ENSSFOG00015024211	xrn1	100	67.703	Scleropages_formosus
ENSPREG00000021147	xrn1	100	78.905	ENSSMAG00000016534	xrn1	100	80.729	Scophthalmus_maximus
ENSPREG00000021147	xrn1	90	87.876	ENSSDUG00000010306	xrn1	97	87.307	Seriola_dumerili
ENSPREG00000021147	xrn1	96	86.520	ENSSLDG00000021543	xrn1	99	85.972	Seriola_lalandi_dorsalis
ENSPREG00000021147	xrn1	63	65.195	ENSSARG00000007741	-	75	66.838	Sorex_araneus
ENSPREG00000021147	xrn1	100	61.383	ENSTGUG00000008498	XRN1	100	61.252	Taeniopygia_guttata
ENSPREG00000021147	xrn1	96	77.312	ENSTRUG00000004895	xrn1	97	84.989	Takifugu_rubripes
ENSPREG00000021147	xrn1	99	78.223	ENSTNIG00000017615	xrn1	100	70.917	Tetraodon_nigroviridis
ENSPREG00000021147	xrn1	81	84.677	ENSTBEG00000003256	XRN1	85	82.564	Tupaia_belangeri
ENSPREG00000021147	xrn1	100	57.919	ENSTTRG00000012914	XRN1	100	57.555	Tursiops_truncatus
ENSPREG00000021147	xrn1	99	68.085	ENSUAMG00000001608	XRN1	99	73.585	Ursus_americanus
ENSPREG00000021147	xrn1	99	69.740	ENSUMAG00000013625	XRN1	96	69.819	Ursus_maritimus
ENSPREG00000021147	xrn1	100	58.864	ENSVPAG00000004690	XRN1	100	58.720	Vicugna_pacos
ENSPREG00000021147	xrn1	96	70.055	ENSVVUG00000024461	XRN1	99	77.987	Vulpes_vulpes
ENSPREG00000021147	xrn1	100	60.506	ENSXETG00000000619	xrn1	100	84.156	Xenopus_tropicalis
ENSPREG00000021147	xrn1	100	88.338	ENSXCOG00000007917	xrn1	100	88.338	Xiphophorus_couchianus
ENSPREG00000021147	xrn1	93	93.622	ENSXMAG00000018320	xrn1	99	94.031	Xiphophorus_maculatus