EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000021880 (Gene tree)
Gene ID: 103459091
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 18001 bases
Position: chrLG23:205881-223881
Accession: 103459091
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000032300	Upf2	PF04050.14	1.5e-32	1	1
ENSPREP00000032300	MIF4G	PF02854.19	1.1e-80	1	3
ENSPREP00000032300	MIF4G	PF02854.19	1.1e-80	2	3
ENSPREP00000032300	MIF4G	PF02854.19	1.1e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000032663	UPF2-201	3792	XM_008400329	ENSPREP00000032300	1263 (aa)	XP_008398551	-

Gene Model

Click here to download ENSPREG00000021880's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000021880's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000021880	UPF2	100	82.081	ENSG00000151461	UPF2	99	79.656	Homo_sapiens
ENSPREG00000021880	UPF2	100	88.713	ENSAPOG00000015837	UPF2	100	88.477	Acanthochromis_polyacanthus
ENSPREG00000021880	UPF2	100	82.537	ENSAMEG00000004586	UPF2	99	80.188	Ailuropoda_melanoleuca
ENSPREG00000021880	UPF2	100	92.163	ENSACIG00000018078	UPF2	100	92.163	Amphilophus_citrinellus
ENSPREG00000021880	UPF2	100	93.328	ENSAOCG00000016766	UPF2	99	93.485	Amphiprion_ocellaris
ENSPREG00000021880	UPF2	100	93.407	ENSAPEG00000019084	UPF2	99	93.564	Amphiprion_percula
ENSPREG00000021880	UPF2	100	92.006	ENSATEG00000021677	UPF2	99	92.006	Anabas_testudineus
ENSPREG00000021880	UPF2	100	78.471	ENSAPLG00000010287	UPF2	90	83.695	Anas_platyrhynchos
ENSPREG00000021880	UPF2	100	82.381	ENSACAG00000009259	UPF2	99	82.459	Anolis_carolinensis
ENSPREG00000021880	UPF2	91	78.929	ENSANAG00000028451	UPF2	93	78.966	Aotus_nancymaae
ENSPREG00000021880	UPF2	100	92.163	ENSACLG00000012696	UPF2	99	92.163	Astatotilapia_calliptera
ENSPREG00000021880	UPF2	100	87.627	ENSAMXG00000013700	UPF2	99	85.278	Astyanax_mexicanus
ENSPREG00000021880	UPF2	100	82.302	ENSBTAG00000000288	UPF2	99	79.796	Bos_taurus
ENSPREG00000021880	UPF2	100	81.989	ENSCJAG00000020685	UPF2	99	79.718	Callithrix_jacchus
ENSPREG00000021880	UPF2	100	82.537	ENSCAFG00000004839	UPF2	99	80.188	Canis_familiaris
ENSPREG00000021880	UPF2	95	86.364	ENSCAFG00020005882	UPF2	98	80.334	Canis_lupus_dingo
ENSPREG00000021880	UPF2	100	82.459	ENSCHIG00000020359	UPF2	99	79.953	Capra_hircus
ENSPREG00000021880	UPF2	100	82.224	ENSTSYG00000000935	UPF2	97	85.000	Carlito_syrichta
ENSPREG00000021880	UPF2	91	74.572	ENSCAPG00000016658	UPF2	95	73.608	Cavia_aperea
ENSPREG00000021880	UPF2	99	79.544	ENSCPOG00000008809	UPF2	92	82.348	Cavia_porcellus
ENSPREG00000021880	UPF2	100	75.881	ENSCCAG00000035991	UPF2	99	73.688	Cebus_capucinus
ENSPREG00000021880	UPF2	100	82.081	ENSCATG00000032679	UPF2	99	79.656	Cercocebus_atys
ENSPREG00000021880	UPF2	100	81.426	ENSCLAG00000011434	UPF2	99	80.329	Chinchilla_lanigera
ENSPREG00000021880	UPF2	100	82.081	ENSCSAG00000013372	UPF2	99	79.656	Chlorocebus_sabaeus
ENSPREG00000021880	UPF2	79	89.509	ENSCHOG00000000422	UPF2	81	89.509	Choloepus_hoffmanni
ENSPREG00000021880	UPF2	100	81.412	ENSCPBG00000027823	UPF2	100	81.255	Chrysemys_picta_bellii
ENSPREG00000021880	UPF2	78	49.406	ENSCSAVG00000007772	-	99	48.431	Ciona_savignyi
ENSPREG00000021880	UPF2	100	76.168	ENSCANG00000040396	UPF2	100	74.824	Colobus_angolensis_palliatus
ENSPREG00000021880	UPF2	100	81.925	ENSCGRG00001019347	Upf2	99	79.310	Cricetulus_griseus_chok1gshd
ENSPREG00000021880	UPF2	100	81.925	ENSCGRG00000017993	Upf2	99	79.310	Cricetulus_griseus_crigri
ENSPREG00000021880	UPF2	99	85.714	ENSCSEG00000003520	UPF2	99	85.397	Cynoglossus_semilaevis
ENSPREG00000021880	UPF2	99	95.016	ENSCVAG00000006167	UPF2	100	94.699	Cyprinodon_variegatus
ENSPREG00000021880	UPF2	100	82.381	ENSDNOG00000018160	UPF2	99	80.110	Dasypus_novemcinctus
ENSPREG00000021880	UPF2	100	81.754	ENSDORG00000002478	Upf2	99	79.405	Dipodomys_ordii
ENSPREG00000021880	UPF2	89	35.885	FBgn0029992	Upf2	73	39.604	Drosophila_melanogaster
ENSPREG00000021880	UPF2	73	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSPREG00000021880	UPF2	65	71.523	ENSEBUG00000012448	-	93	69.474	Eptatretus_burgeri
ENSPREG00000021880	UPF2	100	81.426	ENSEASG00005019274	UPF2	99	80.329	Equus_asinus_asinus
ENSPREG00000021880	UPF2	100	81.426	ENSECAG00000017022	UPF2	99	80.329	Equus_caballus
ENSPREG00000021880	UPF2	82	74.441	ENSEEUG00000007819	UPF2	69	85.279	Erinaceus_europaeus
ENSPREG00000021880	UPF2	100	87.599	ENSELUG00000012014	UPF2	99	87.293	Esox_lucius
ENSPREG00000021880	UPF2	100	85.083	ENSFCAG00000005785	UPF2	99	80.266	Felis_catus
ENSPREG00000021880	UPF2	100	83.477	ENSFALG00000001889	UPF2	98	83.242	Ficedula_albicollis
ENSPREG00000021880	UPF2	100	81.064	ENSFDAG00000014348	UPF2	99	79.859	Fukomys_damarensis
ENSPREG00000021880	UPF2	99	95.487	ENSFHEG00000009826	UPF2	99	95.487	Fundulus_heteroclitus
ENSPREG00000021880	UPF2	91	87.792	ENSGMOG00000005557	UPF2	100	85.290	Gadus_morhua
ENSPREG00000021880	UPF2	100	83.333	ENSGALG00000033772	UPF2	99	82.748	Gallus_gallus
ENSPREG00000021880	UPF2	100	97.172	ENSGAFG00000020867	UPF2	99	97.172	Gambusia_affinis
ENSPREG00000021880	UPF2	100	90.118	ENSGACG00000001080	UPF2	100	90.196	Gasterosteus_aculeatus
ENSPREG00000021880	UPF2	100	82.381	ENSGAGG00000002700	UPF2	99	82.381	Gopherus_agassizii
ENSPREG00000021880	UPF2	100	82.081	ENSGGOG00000001479	UPF2	99	79.656	Gorilla_gorilla
ENSPREG00000021880	UPF2	100	92.163	ENSHBUG00000004249	UPF2	100	92.163	Haplochromis_burtoni
ENSPREG00000021880	UPF2	100	81.034	ENSHGLG00000015176	-	99	79.937	Heterocephalus_glaber_female
ENSPREG00000021880	UPF2	100	72.292	ENSHGLG00000003822	-	99	72.214	Heterocephalus_glaber_female
ENSPREG00000021880	UPF2	100	78.918	ENSHGLG00100010036	UPF2	95	80.912	Heterocephalus_glaber_male
ENSPREG00000021880	UPF2	100	89.263	ENSHCOG00000004025	UPF2	99	89.263	Hippocampus_comes
ENSPREG00000021880	UPF2	100	86.787	ENSIPUG00000015524	UPF2	99	86.474	Ictalurus_punctatus
ENSPREG00000021880	UPF2	100	82.224	ENSSTOG00000013075	UPF2	99	79.796	Ictidomys_tridecemlineatus
ENSPREG00000021880	UPF2	100	78.795	ENSJJAG00000004913	Upf2	99	78.700	Jaculus_jaculus
ENSPREG00000021880	UPF2	99	92.180	ENSKMAG00000001071	UPF2	99	91.706	Kryptolebias_marmoratus
ENSPREG00000021880	UPF2	80	89.184	ENSLBEG00000000728	-	93	89.526	Labrus_bergylta
ENSPREG00000021880	UPF2	100	90.909	ENSLBEG00000016394	-	99	90.909	Labrus_bergylta
ENSPREG00000021880	UPF2	99	75.682	ENSLACG00000015945	UPF2	99	75.838	Latimeria_chalumnae
ENSPREG00000021880	UPF2	99	86.751	ENSLOCG00000015698	UPF2	99	86.514	Lepisosteus_oculatus
ENSPREG00000021880	UPF2	100	82.081	ENSMFAG00000043865	UPF2	99	79.656	Macaca_fascicularis
ENSPREG00000021880	UPF2	100	82.081	ENSMMUG00000008241	UPF2	99	79.656	Macaca_mulatta
ENSPREG00000021880	UPF2	80	82.908	ENSMNEG00000008062	UPF2	99	79.862	Macaca_nemestrina
ENSPREG00000021880	UPF2	100	78.800	ENSMLEG00000036120	UPF2	100	77.543	Mandrillus_leucophaeus
ENSPREG00000021880	UPF2	100	91.536	ENSMAMG00000018276	UPF2	99	91.536	Mastacembelus_armatus
ENSPREG00000021880	UPF2	100	92.163	ENSMZEG00005021595	UPF2	99	92.163	Maylandia_zebra
ENSPREG00000021880	UPF2	99	83.019	ENSMGAG00000004573	UPF2	99	82.431	Meleagris_gallopavo
ENSPREG00000021880	UPF2	100	79.969	ENSMAUG00000016512	Upf2	99	77.351	Mesocricetus_auratus
ENSPREG00000021880	UPF2	95	85.859	ENSMICG00000001716	UPF2	100	76.314	Microcebus_murinus
ENSPREG00000021880	UPF2	100	80.673	ENSMOCG00000008263	Upf2	99	79.765	Microtus_ochrogaster
ENSPREG00000021880	UPF2	100	88.845	ENSMMOG00000006528	UPF2	100	88.845	Mola_mola
ENSPREG00000021880	UPF2	100	80.501	ENSMODG00000016794	UPF2	99	80.266	Monodelphis_domestica
ENSPREG00000021880	UPF2	100	91.949	ENSMALG00000002663	UPF2	100	92.186	Monopterus_albus
ENSPREG00000021880	UPF2	100	81.505	MGP_CAROLIEiJ_G0023157	Upf2	99	84.105	Mus_caroli
ENSPREG00000021880	UPF2	100	81.847	ENSMUSG00000043241	Upf2	99	82.857	Mus_musculus
ENSPREG00000021880	UPF2	100	81.897	MGP_PahariEiJ_G0019217	Upf2	99	82.857	Mus_pahari
ENSPREG00000021880	UPF2	100	82.081	MGP_SPRETEiJ_G0024075	Upf2	99	82.857	Mus_spretus
ENSPREG00000021880	UPF2	100	82.381	ENSMPUG00000001064	UPF2	99	80.188	Mustela_putorius_furo
ENSPREG00000021880	UPF2	100	81.704	ENSMLUG00000000228	UPF2	100	79.469	Myotis_lucifugus
ENSPREG00000021880	UPF2	100	92.163	ENSNBRG00000013629	UPF2	99	92.163	Neolamprologus_brichardi
ENSPREG00000021880	UPF2	100	82.003	ENSNLEG00000012058	UPF2	99	79.577	Nomascus_leucogenys
ENSPREG00000021880	UPF2	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSPREG00000021880	UPF2	100	81.001	ENSODEG00000001290	UPF2	99	79.938	Octodon_degus
ENSPREG00000021880	UPF2	100	91.771	ENSONIG00000017991	UPF2	99	91.771	Oreochromis_niloticus
ENSPREG00000021880	UPF2	100	79.875	ENSOCUG00000006230	UPF2	100	79.719	Oryctolagus_cuniculus
ENSPREG00000021880	UPF2	100	90.510	ENSORLG00000017189	UPF2	99	90.902	Oryzias_latipes
ENSPREG00000021880	UPF2	100	90.588	ENSORLG00020005969	UPF2	99	90.980	Oryzias_latipes_hni
ENSPREG00000021880	UPF2	100	90.588	ENSORLG00015005713	UPF2	99	90.980	Oryzias_latipes_hsok
ENSPREG00000021880	UPF2	100	87.284	ENSOMEG00000023420	UPF2	98	87.363	Oryzias_melastigma
ENSPREG00000021880	UPF2	100	82.017	ENSOGAG00000005796	UPF2	99	79.405	Otolemur_garnettii
ENSPREG00000021880	UPF2	100	82.252	ENSOARG00000014587	UPF2	99	79.750	Ovis_aries
ENSPREG00000021880	UPF2	100	79.254	ENSPPAG00000037953	UPF2	100	77.230	Pan_paniscus
ENSPREG00000021880	UPF2	100	82.616	ENSPPRG00000000690	UPF2	99	80.266	Panthera_pardus
ENSPREG00000021880	UPF2	100	82.616	ENSPTIG00000008867	UPF2	99	80.266	Panthera_tigris_altaica
ENSPREG00000021880	UPF2	100	82.081	ENSPTRG00000002291	UPF2	99	79.656	Pan_troglodytes
ENSPREG00000021880	UPF2	100	82.003	ENSPANG00000023399	UPF2	99	79.577	Papio_anubis
ENSPREG00000021880	UPF2	100	87.089	ENSPKIG00000025502	UPF2	99	85.603	Paramormyrops_kingsleyae
ENSPREG00000021880	UPF2	59	81.555	ENSPSIG00000015158	UPF2	95	81.159	Pelodiscus_sinensis
ENSPREG00000021880	UPF2	100	89.390	ENSPMGG00000005259	UPF2	100	89.153	Periophthalmus_magnuspinnatus
ENSPREG00000021880	UPF2	93	74.640	ENSPEMG00000015731	Upf2	99	69.892	Peromyscus_maniculatus_bairdii
ENSPREG00000021880	UPF2	100	82.500	ENSPCIG00000006656	UPF2	100	80.234	Phascolarctos_cinereus
ENSPREG00000021880	UPF2	100	97.958	ENSPFOG00000017118	UPF2	99	97.958	Poecilia_formosa
ENSPREG00000021880	UPF2	100	98.036	ENSPLAG00000005094	UPF2	99	98.036	Poecilia_latipinna
ENSPREG00000021880	UPF2	100	97.958	ENSPMEG00000017009	UPF2	99	97.958	Poecilia_mexicana
ENSPREG00000021880	UPF2	65	84.726	ENSPPYG00000002089	-	99	84.726	Pongo_abelii
ENSPREG00000021880	UPF2	100	69.538	ENSPCAG00000000684	UPF2	85	74.610	Procavia_capensis
ENSPREG00000021880	UPF2	100	76.056	ENSPVAG00000017286	UPF2	99	73.709	Pteropus_vampyrus
ENSPREG00000021880	UPF2	100	89.577	ENSPNYG00000017096	UPF2	100	89.577	Pundamilia_nyererei
ENSPREG00000021880	UPF2	100	87.959	ENSPNAG00000009357	UPF2	100	86.861	Pygocentrus_nattereri
ENSPREG00000021880	UPF2	100	77.632	ENSRNOG00000023593	Upf2	98	93.182	Rattus_norvegicus
ENSPREG00000021880	UPF2	100	80.893	ENSRBIG00000037780	UPF2	100	78.292	Rhinopithecus_bieti
ENSPREG00000021880	UPF2	100	81.847	ENSRROG00000043547	UPF2	99	79.343	Rhinopithecus_roxellana
ENSPREG00000021880	UPF2	100	81.911	ENSSBOG00000020012	UPF2	99	79.561	Saimiri_boliviensis_boliviensis
ENSPREG00000021880	UPF2	100	85.223	ENSSFOG00015023788	upf2	100	84.875	Scleropages_formosus
ENSPREG00000021880	UPF2	90	90.365	ENSSMAG00000007637	UPF2	100	89.269	Scophthalmus_maximus
ENSPREG00000021880	UPF2	100	92.857	ENSSDUG00000017244	UPF2	99	93.014	Seriola_dumerili
ENSPREG00000021880	UPF2	100	90.845	ENSSLDG00000016866	UPF2	100	90.450	Seriola_lalandi_dorsalis
ENSPREG00000021880	UPF2	100	79.248	ENSSARG00000008615	UPF2	99	81.206	Sorex_araneus
ENSPREG00000021880	UPF2	100	80.312	ENSSPUG00000014544	UPF2	99	80.234	Sphenodon_punctatus
ENSPREG00000021880	UPF2	68	84.598	ENSSSCG00000011117	-	99	84.598	Sus_scrofa
ENSPREG00000021880	UPF2	99	83.307	ENSTGUG00000002163	-	100	83.072	Taeniopygia_guttata
ENSPREG00000021880	UPF2	100	90.517	ENSTRUG00000007519	UPF2	99	90.517	Takifugu_rubripes
ENSPREG00000021880	UPF2	100	87.089	ENSTNIG00000004453	UPF2	99	87.089	Tetraodon_nigroviridis
ENSPREG00000021880	UPF2	93	72.559	ENSTBEG00000012679	UPF2	93	72.475	Tupaia_belangeri
ENSPREG00000021880	UPF2	100	81.505	ENSTTRG00000016388	UPF2	99	80.251	Tursiops_truncatus
ENSPREG00000021880	UPF2	87	93.258	ENSUAMG00000023560	UPF2	98	93.258	Ursus_americanus
ENSPREG00000021880	UPF2	100	82.459	ENSUMAG00000012953	UPF2	95	80.063	Ursus_maritimus
ENSPREG00000021880	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSPREG00000021880	UPF2	100	82.537	ENSVVUG00000006166	UPF2	99	80.188	Vulpes_vulpes
ENSPREG00000021880	UPF2	100	79.219	ENSXETG00000033103	UPF2	91	83.405	Xenopus_tropicalis
ENSPREG00000021880	UPF2	100	97.486	ENSXCOG00000011604	UPF2	100	97.486	Xiphophorus_couchianus
ENSPREG00000021880	UPF2	100	97.565	ENSXMAG00000017209	UPF2	99	97.565	Xiphophorus_maculatus