EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000022533 (Gene tree)
Gene ID: 103462375
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 2237 bases
Position: chrLG3:15442421-15444657
Accession: 103462375
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000033248	RRM_1	PF00076.22	6.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000033626	PABPN1L-201	696	XM_008405110	ENSPREP00000033248	231 (aa)	XP_008403332	-

Gene Model

Click here to download ENSPREG00000022533's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000022533's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000022533	PABPN1L	92	91.509	ENSAPOG00000000685	PABPN1L	71	91.244	Acanthochromis_polyacanthus
ENSPREG00000022533	PABPN1L	85	92.386	ENSACIG00000021400	PABPN1L	89	91.195	Amphilophus_citrinellus
ENSPREG00000022533	PABPN1L	92	92.488	ENSAOCG00000019844	PABPN1L	88	92.208	Amphiprion_ocellaris
ENSPREG00000022533	PABPN1L	92	92.958	ENSAPEG00000019534	PABPN1L	88	92.641	Amphiprion_percula
ENSPREG00000022533	PABPN1L	92	92.453	ENSATEG00000011646	PABPN1L	86	92.593	Anabas_testudineus
ENSPREG00000022533	PABPN1L	52	56.303	ENSAPLG00000009174	PABPN1L	93	58.559	Anas_platyrhynchos
ENSPREG00000022533	PABPN1L	71	56.886	ENSACAG00000013250	PABPN1L	66	63.934	Anolis_carolinensis
ENSPREG00000022533	PABPN1L	92	91.549	ENSACLG00000025147	PABPN1L	83	91.204	Astatotilapia_calliptera
ENSPREG00000022533	PABPN1L	100	85.281	ENSCSEG00000001142	pabpn1l	81	86.256	Cynoglossus_semilaevis
ENSPREG00000022533	PABPN1L	100	97.835	ENSCVAG00000015547	PABPN1L	88	97.835	Cyprinodon_variegatus
ENSPREG00000022533	PABPN1L	91	69.194	ENSELUG00000018385	PABPN1L	85	63.348	Esox_lucius
ENSPREG00000022533	PABPN1L	100	96.970	ENSFHEG00000018295	PABPN1L	88	96.970	Fundulus_heteroclitus
ENSPREG00000022533	PABPN1L	92	76.852	ENSGMOG00000001475	PABPN1L	83	78.182	Gadus_morhua
ENSPREG00000022533	PABPN1L	63	61.379	ENSGALG00000006242	PABPN1L	69	61.475	Gallus_gallus
ENSPREG00000022533	PABPN1L	100	99.567	ENSGAFG00000012565	PABPN1L	88	99.567	Gambusia_affinis
ENSPREG00000022533	PABPN1L	94	86.364	ENSGACG00000015428	PABPN1L	83	85.586	Gasterosteus_aculeatus
ENSPREG00000022533	PABPN1L	92	91.549	ENSHBUG00000002388	PABPN1L	82	91.667	Haplochromis_burtoni
ENSPREG00000022533	PABPN1L	93	88.785	ENSHCOG00000004151	PABPN1L	80	88.479	Hippocampus_comes
ENSPREG00000022533	PABPN1L	58	73.684	ENSIPUG00000023583	PABPN1L	66	71.318	Ictalurus_punctatus
ENSPREG00000022533	PABPN1L	93	92.093	ENSKMAG00000001112	PABPN1L	96	91.705	Kryptolebias_marmoratus
ENSPREG00000022533	PABPN1L	93	85.185	ENSLBEG00000011647	PABPN1L	85	87.554	Labrus_bergylta
ENSPREG00000022533	PABPN1L	92	91.549	ENSMZEG00005002186	PABPN1L	83	91.204	Maylandia_zebra
ENSPREG00000022533	PABPN1L	91	86.730	ENSMMOG00000017714	PABPN1L	90	86.730	Mola_mola
ENSPREG00000022533	PABPN1L	92	87.324	ENSMALG00000016926	PABPN1L	82	87.500	Monopterus_albus
ENSPREG00000022533	PABPN1L	92	91.549	ENSNBRG00000017078	PABPN1L	91	91.667	Neolamprologus_brichardi
ENSPREG00000022533	PABPN1L	100	84.848	ENSORLG00000026560	PABPN1L	82	85.185	Oryzias_latipes
ENSPREG00000022533	PABPN1L	100	84.848	ENSORLG00020015068	PABPN1L	82	85.185	Oryzias_latipes_hni
ENSPREG00000022533	PABPN1L	100	84.848	ENSORLG00015000397	PABPN1L	82	85.185	Oryzias_latipes_hsok
ENSPREG00000022533	PABPN1L	100	83.117	ENSOMEG00000017896	PABPN1L	59	83.410	Oryzias_melastigma
ENSPREG00000022533	PABPN1L	64	63.087	ENSPSIG00000003404	PABPN1L	52	75.510	Pelodiscus_sinensis
ENSPREG00000022533	PABPN1L	92	84.977	ENSPMGG00000013927	PABPN1L	96	84.793	Periophthalmus_magnuspinnatus
ENSPREG00000022533	PABPN1L	59	60.584	ENSPCIG00000007038	-	67	69.072	Phascolarctos_cinereus
ENSPREG00000022533	PABPN1L	100	99.567	ENSPFOG00000007001	PABPN1L	88	99.567	Poecilia_formosa
ENSPREG00000022533	PABPN1L	100	99.567	ENSPLAG00000018431	PABPN1L	88	99.567	Poecilia_latipinna
ENSPREG00000022533	PABPN1L	75	93.820	ENSPMEG00000000169	-	88	93.820	Poecilia_mexicana
ENSPREG00000022533	PABPN1L	100	99.567	ENSPMEG00000009108	PABPN1L	88	99.567	Poecilia_mexicana
ENSPREG00000022533	PABPN1L	92	91.549	ENSPNYG00000004803	PABPN1L	83	91.204	Pundamilia_nyererei
ENSPREG00000022533	PABPN1L	92	86.697	ENSSMAG00000021348	PABPN1L	83	83.710	Scophthalmus_maximus
ENSPREG00000022533	PABPN1L	92	92.488	ENSSDUG00000006986	PABPN1L	88	92.208	Seriola_dumerili
ENSPREG00000022533	PABPN1L	92	92.488	ENSSLDG00000021845	PABPN1L	88	92.208	Seriola_lalandi_dorsalis
ENSPREG00000022533	PABPN1L	93	91.163	ENSSPAG00000017978	PABPN1L	88	90.909	Stegastes_partitus
ENSPREG00000022533	PABPN1L	100	80.519	ENSTRUG00000024725	PABPN1L	80	80.093	Takifugu_rubripes
ENSPREG00000022533	PABPN1L	83	92.708	ENSTNIG00000009416	PABPN1L	100	92.708	Tetraodon_nigroviridis
ENSPREG00000022533	PABPN1L	100	99.134	ENSXCOG00000003254	PABPN1L	100	99.134	Xiphophorus_couchianus
ENSPREG00000022533	PABPN1L	92	94.366	ENSXMAG00000029090	PABPN1L	96	94.009	Xiphophorus_maculatus