EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000022635 (Gene tree)
Gene ID: -
Gene Symbol: snrpf
Alias: snrpfl
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 2186 bases
Position: chrLG23:2157473-2159658
Accession: ZDB-GENE-040930-9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000033403	LSM	PF01423.22	7.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000033782	-	264	-	ENSPREP00000033403	87 (aa)	-	-

Gene Model

Click here to download ENSPREG00000022635's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000022635's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000022635	snrpf	84	49.315	ENSPREG00000023235	lsm6	91	49.315

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000022635	snrpf	97	97.619	ENSG00000139343	SNRPF	98	97.619	Homo_sapiens
ENSPREG00000022635	snrpf	97	100.000	ENSAPOG00000003377	snrpf	66	100.000	Acanthochromis_polyacanthus
ENSPREG00000022635	snrpf	97	97.619	ENSAMEG00000002166	-	99	97.619	Ailuropoda_melanoleuca
ENSPREG00000022635	snrpf	89	84.416	ENSAMEG00000018718	-	87	85.526	Ailuropoda_melanoleuca
ENSPREG00000022635	snrpf	98	98.824	ENSACIG00000013216	snrpf	100	98.824	Amphilophus_citrinellus
ENSPREG00000022635	snrpf	98	98.824	ENSAOCG00000015108	snrpf	100	98.824	Amphiprion_ocellaris
ENSPREG00000022635	snrpf	98	98.824	ENSAPEG00000022022	snrpf	100	98.824	Amphiprion_percula
ENSPREG00000022635	snrpf	97	100.000	ENSATEG00000022625	snrpf	90	100.000	Anabas_testudineus
ENSPREG00000022635	snrpf	87	93.421	ENSACAG00000014073	SNRPF	87	93.421	Anolis_carolinensis
ENSPREG00000022635	snrpf	82	88.732	ENSANAG00000020297	-	65	88.732	Aotus_nancymaae
ENSPREG00000022635	snrpf	97	97.619	ENSANAG00000032845	SNRPF	98	97.619	Aotus_nancymaae
ENSPREG00000022635	snrpf	84	67.123	ENSANAG00000025860	-	82	67.123	Aotus_nancymaae
ENSPREG00000022635	snrpf	98	98.824	ENSACLG00000016066	snrpf	100	98.824	Astatotilapia_calliptera
ENSPREG00000022635	snrpf	84	97.260	ENSAMXG00000007421	snrpf	85	97.260	Astyanax_mexicanus
ENSPREG00000022635	snrpf	87	90.789	ENSBTAG00000050012	-	90	90.411	Bos_taurus
ENSPREG00000022635	snrpf	97	97.619	ENSBTAG00000016271	SNRPF	98	97.619	Bos_taurus
ENSPREG00000022635	snrpf	92	68.750	WBGene00004918	snr-5	88	70.667	Caenorhabditis_elegans
ENSPREG00000022635	snrpf	97	97.619	ENSCJAG00000002705	-	98	97.619	Callithrix_jacchus
ENSPREG00000022635	snrpf	83	90.278	ENSCAFG00000031151	-	86	90.541	Canis_familiaris
ENSPREG00000022635	snrpf	97	97.619	ENSCAFG00000006395	-	76	97.619	Canis_familiaris
ENSPREG00000022635	snrpf	90	85.897	ENSCAFG00020013161	-	74	94.286	Canis_lupus_dingo
ENSPREG00000022635	snrpf	83	90.278	ENSCAFG00020010823	-	86	90.541	Canis_lupus_dingo
ENSPREG00000022635	snrpf	84	83.562	ENSTSYG00000030635	-	84	83.562	Carlito_syrichta
ENSPREG00000022635	snrpf	84	91.892	ENSTSYG00000036502	-	85	91.892	Carlito_syrichta
ENSPREG00000022635	snrpf	95	90.361	ENSTSYG00000031636	-	63	92.000	Carlito_syrichta
ENSPREG00000022635	snrpf	97	97.619	ENSCAPG00000007242	SNRPF	99	97.619	Cavia_aperea
ENSPREG00000022635	snrpf	97	97.619	ENSCPOG00000013898	SNRPF	98	97.619	Cavia_porcellus
ENSPREG00000022635	snrpf	97	96.429	ENSCCAG00000017356	-	98	96.429	Cebus_capucinus
ENSPREG00000022635	snrpf	97	88.095	ENSCCAG00000033627	-	57	89.041	Cebus_capucinus
ENSPREG00000022635	snrpf	97	97.619	ENSCCAG00000037378	-	98	97.619	Cebus_capucinus
ENSPREG00000022635	snrpf	100	96.552	ENSCLAG00000007200	SNRPF	100	96.552	Chinchilla_lanigera
ENSPREG00000022635	snrpf	97	97.619	ENSCSAG00000003602	-	68	97.619	Chlorocebus_sabaeus
ENSPREG00000022635	snrpf	71	96.774	ENSCHOG00000009392	SNRPF	97	96.774	Choloepus_hoffmanni
ENSPREG00000022635	snrpf	97	85.714	ENSCPBG00000001985	-	87	87.671	Chrysemys_picta_bellii
ENSPREG00000022635	snrpf	97	86.905	ENSCPBG00000026463	-	85	87.671	Chrysemys_picta_bellii
ENSPREG00000022635	snrpf	97	91.667	ENSCPBG00000024287	-	59	93.151	Chrysemys_picta_bellii
ENSPREG00000022635	snrpf	84	89.041	ENSCPBG00000006227	-	85	89.041	Chrysemys_picta_bellii
ENSPREG00000022635	snrpf	100	87.356	ENSCSAVG00000007498	-	86	89.474	Ciona_savignyi
ENSPREG00000022635	snrpf	97	97.619	ENSCGRG00001017100	-	98	97.619	Cricetulus_griseus_chok1gshd
ENSPREG00000022635	snrpf	85	89.189	ENSCGRG00001008965	-	57	89.189	Cricetulus_griseus_chok1gshd
ENSPREG00000022635	snrpf	91	89.873	ENSCGRG00000018878	-	92	89.189	Cricetulus_griseus_crigri
ENSPREG00000022635	snrpf	97	97.619	ENSCGRG00000000336	-	98	97.619	Cricetulus_griseus_crigri
ENSPREG00000022635	snrpf	97	98.810	ENSCSEG00000004748	snrpf	98	98.810	Cynoglossus_semilaevis
ENSPREG00000022635	snrpf	97	100.000	ENSCVAG00000000397	snrpf	67	100.000	Cyprinodon_variegatus
ENSPREG00000022635	snrpf	97	97.674	ENSDARG00000105037	snrpf	98	97.674	Danio_rerio
ENSPREG00000022635	snrpf	97	96.429	ENSDNOG00000048989	-	75	96.429	Dasypus_novemcinctus
ENSPREG00000022635	snrpf	83	81.944	ENSDNOG00000049373	-	63	81.944	Dasypus_novemcinctus
ENSPREG00000022635	snrpf	97	97.619	ENSDNOG00000043775	-	54	97.619	Dasypus_novemcinctus
ENSPREG00000022635	snrpf	68	94.915	ENSDORG00000029740	-	72	94.915	Dipodomys_ordii
ENSPREG00000022635	snrpf	80	87.143	ENSDORG00000025351	-	97	87.143	Dipodomys_ordii
ENSPREG00000022635	snrpf	97	77.381	FBgn0000426	SmF	83	80.822	Drosophila_melanogaster
ENSPREG00000022635	snrpf	97	97.619	ENSETEG00000001558	-	98	97.619	Echinops_telfairi
ENSPREG00000022635	snrpf	94	75.610	ENSEBUG00000001793	-	72	86.567	Eptatretus_burgeri
ENSPREG00000022635	snrpf	97	97.619	ENSECAG00000019817	SNRPF	68	97.619	Equus_caballus
ENSPREG00000022635	snrpf	97	97.619	ENSEEUG00000013509	SNRPF	99	97.619	Erinaceus_europaeus
ENSPREG00000022635	snrpf	97	94.048	ENSELUG00000007737	RUXF	84	95.890	Esox_lucius
ENSPREG00000022635	snrpf	97	97.619	ENSELUG00000003121	RUXF	98	97.619	Esox_lucius
ENSPREG00000022635	snrpf	94	75.610	ENSFCAG00000031148	-	70	73.684	Felis_catus
ENSPREG00000022635	snrpf	84	72.603	ENSFCAG00000021942	-	84	72.603	Felis_catus
ENSPREG00000022635	snrpf	97	97.619	ENSFCAG00000029966	-	98	97.619	Felis_catus
ENSPREG00000022635	snrpf	97	97.619	ENSFALG00000010799	SNRPF	98	97.619	Ficedula_albicollis
ENSPREG00000022635	snrpf	97	97.619	ENSFDAG00000002831	-	98	97.619	Fukomys_damarensis
ENSPREG00000022635	snrpf	97	100.000	ENSFHEG00000003240	snrpf	74	100.000	Fundulus_heteroclitus
ENSPREG00000022635	snrpf	97	100.000	ENSGMOG00000007741	snrpf	99	100.000	Gadus_morhua
ENSPREG00000022635	snrpf	97	97.619	ENSGALG00000011409	SNRPF	98	97.619	Gallus_gallus
ENSPREG00000022635	snrpf	100	97.701	ENSGAFG00000016187	snrpf	100	97.701	Gambusia_affinis
ENSPREG00000022635	snrpf	97	98.810	ENSGACG00000020055	snrpf	99	98.810	Gasterosteus_aculeatus
ENSPREG00000022635	snrpf	77	83.582	ENSGAGG00000014132	-	81	83.582	Gopherus_agassizii
ENSPREG00000022635	snrpf	100	82.955	ENSGAGG00000022991	-	91	84.416	Gopherus_agassizii
ENSPREG00000022635	snrpf	85	90.541	ENSGAGG00000012945	-	69	92.105	Gopherus_agassizii
ENSPREG00000022635	snrpf	69	88.333	ENSGAGG00000011163	-	86	91.837	Gopherus_agassizii
ENSPREG00000022635	snrpf	69	93.333	ENSGAGG00000020974	-	52	90.323	Gopherus_agassizii
ENSPREG00000022635	snrpf	89	74.026	ENSGGOG00000039564	-	88	72.603	Gorilla_gorilla
ENSPREG00000022635	snrpf	97	97.619	ENSGGOG00000001127	-	100	96.471	Gorilla_gorilla
ENSPREG00000022635	snrpf	94	78.049	ENSGGOG00000039936	-	81	75.342	Gorilla_gorilla
ENSPREG00000022635	snrpf	97	96.429	ENSHGLG00000021172	-	98	96.429	Heterocephalus_glaber_female
ENSPREG00000022635	snrpf	97	97.619	ENSHGLG00000009108	SNRPF	98	97.619	Heterocephalus_glaber_female
ENSPREG00000022635	snrpf	97	97.619	ENSHGLG00100008103	-	99	97.619	Heterocephalus_glaber_male
ENSPREG00000022635	snrpf	97	96.429	ENSHGLG00100019596	-	98	96.429	Heterocephalus_glaber_male
ENSPREG00000022635	snrpf	75	86.111	ENSHCOG00000018663	snrpf	56	86.111	Hippocampus_comes
ENSPREG00000022635	snrpf	97	100.000	ENSIPUG00000018994	snrpf	100	98.824	Ictalurus_punctatus
ENSPREG00000022635	snrpf	97	97.619	ENSSTOG00000010434	-	98	97.619	Ictidomys_tridecemlineatus
ENSPREG00000022635	snrpf	97	78.571	ENSJJAG00000004558	-	87	79.452	Jaculus_jaculus
ENSPREG00000022635	snrpf	77	91.045	ENSJJAG00000004828	-	86	92.857	Jaculus_jaculus
ENSPREG00000022635	snrpf	97	97.619	ENSJJAG00000011272	-	98	97.619	Jaculus_jaculus
ENSPREG00000022635	snrpf	97	82.143	ENSJJAG00000010502	-	87	83.562	Jaculus_jaculus
ENSPREG00000022635	snrpf	98	98.824	ENSKMAG00000013566	snrpf	99	98.824	Kryptolebias_marmoratus
ENSPREG00000022635	snrpf	97	98.810	ENSLBEG00000008800	snrpf	98	98.810	Labrus_bergylta
ENSPREG00000022635	snrpf	97	97.619	ENSLACG00000002456	-	72	97.619	Latimeria_chalumnae
ENSPREG00000022635	snrpf	97	97.619	ENSLOCG00000015744	snrpf	98	97.619	Lepisosteus_oculatus
ENSPREG00000022635	snrpf	97	97.619	ENSLAFG00000017426	SNRPF	98	97.619	Loxodonta_africana
ENSPREG00000022635	snrpf	98	97.647	ENSMAMG00000016593	snrpf	100	97.647	Mastacembelus_armatus
ENSPREG00000022635	snrpf	98	98.824	ENSMZEG00005014701	snrpf	100	98.824	Maylandia_zebra
ENSPREG00000022635	snrpf	97	97.619	ENSMGAG00000011453	-	76	97.619	Meleagris_gallopavo
ENSPREG00000022635	snrpf	85	97.297	ENSMAUG00000019737	-	100	97.297	Mesocricetus_auratus
ENSPREG00000022635	snrpf	84	93.151	ENSMAUG00000008799	-	85	93.151	Mesocricetus_auratus
ENSPREG00000022635	snrpf	95	72.289	ENSMAUG00000010289	-	66	94.000	Mesocricetus_auratus
ENSPREG00000022635	snrpf	85	97.297	ENSMAUG00000016909	-	100	97.297	Mesocricetus_auratus
ENSPREG00000022635	snrpf	84	90.411	ENSMICG00000030494	-	58	90.411	Microcebus_murinus
ENSPREG00000022635	snrpf	97	97.619	ENSMICG00000012153	-	98	97.619	Microcebus_murinus
ENSPREG00000022635	snrpf	84	84.932	ENSMOCG00000022166	-	80	84.932	Microtus_ochrogaster
ENSPREG00000022635	snrpf	78	80.882	ENSMOCG00000020220	-	87	80.882	Microtus_ochrogaster
ENSPREG00000022635	snrpf	97	97.619	ENSMOCG00000020437	Snrpf	98	97.619	Microtus_ochrogaster
ENSPREG00000022635	snrpf	97	98.810	ENSMMOG00000007127	snrpf	99	98.810	Mola_mola
ENSPREG00000022635	snrpf	97	97.619	ENSMODG00000008091	SNRPF	74	97.619	Monodelphis_domestica
ENSPREG00000022635	snrpf	98	98.824	ENSMALG00000012328	snrpf	100	98.824	Monopterus_albus
ENSPREG00000022635	snrpf	97	97.619	MGP_CAROLIEiJ_G0015735	-	98	97.619	Mus_caroli
ENSPREG00000022635	snrpf	97	97.619	ENSMUSG00000020018	Snrpf	98	97.619	Mus_musculus
ENSPREG00000022635	snrpf	97	97.619	MGP_PahariEiJ_G0031350	Snrpf	98	97.619	Mus_pahari
ENSPREG00000022635	snrpf	97	97.619	MGP_SPRETEiJ_G0016553	Snrpf	98	97.619	Mus_spretus
ENSPREG00000022635	snrpf	97	97.619	ENSMPUG00000007176	-	75	97.619	Mustela_putorius_furo
ENSPREG00000022635	snrpf	97	97.619	ENSMLUG00000027932	-	79	97.619	Myotis_lucifugus
ENSPREG00000022635	snrpf	97	97.619	ENSMLUG00000013577	-	99	97.619	Myotis_lucifugus
ENSPREG00000022635	snrpf	97	97.619	ENSMLUG00000026149	-	79	97.619	Myotis_lucifugus
ENSPREG00000022635	snrpf	97	78.571	ENSMLUG00000026269	-	69	76.712	Myotis_lucifugus
ENSPREG00000022635	snrpf	97	97.619	ENSMLUG00000029201	-	79	97.619	Myotis_lucifugus
ENSPREG00000022635	snrpf	97	97.619	ENSNGAG00000024292	-	98	97.619	Nannospalax_galili
ENSPREG00000022635	snrpf	72	90.476	ENSNGAG00000005851	-	71	90.000	Nannospalax_galili
ENSPREG00000022635	snrpf	97	100.000	ENSNBRG00000011682	snrpf	86	100.000	Neolamprologus_brichardi
ENSPREG00000022635	snrpf	84	69.863	ENSMEUG00000000671	SNRPF	86	69.863	Notamacropus_eugenii
ENSPREG00000022635	snrpf	97	97.619	ENSODEG00000010328	-	100	96.471	Octodon_degus
ENSPREG00000022635	snrpf	97	97.619	ENSOCUG00000010925	SNRPF	74	97.619	Oryctolagus_cuniculus
ENSPREG00000022635	snrpf	84	97.260	ENSORLG00020008216	snrpf	86	97.260	Oryzias_latipes_hni
ENSPREG00000022635	snrpf	84	97.260	ENSORLG00015007418	snrpf	86	97.260	Oryzias_latipes_hsok
ENSPREG00000022635	snrpf	98	97.647	ENSOMEG00000003018	snrpf	100	97.647	Oryzias_melastigma
ENSPREG00000022635	snrpf	84	95.890	ENSOGAG00000030323	-	85	95.890	Otolemur_garnettii
ENSPREG00000022635	snrpf	97	97.619	ENSOARG00000011853	-	73	97.619	Ovis_aries
ENSPREG00000022635	snrpf	94	78.049	ENSPPAG00000037544	-	81	75.342	Pan_paniscus
ENSPREG00000022635	snrpf	89	74.026	ENSPPAG00000037479	-	88	72.603	Pan_paniscus
ENSPREG00000022635	snrpf	94	74.390	ENSPPRG00000007449	-	74	73.973	Panthera_pardus
ENSPREG00000022635	snrpf	97	97.619	ENSPPRG00000005875	-	98	97.619	Panthera_pardus
ENSPREG00000022635	snrpf	97	97.619	ENSPTIG00000007520	SNRPF	98	97.619	Panthera_tigris_altaica
ENSPREG00000022635	snrpf	94	76.829	ENSPTIG00000005117	-	87	73.973	Panthera_tigris_altaica
ENSPREG00000022635	snrpf	94	78.049	ENSPTRG00000043814	-	81	75.342	Pan_troglodytes
ENSPREG00000022635	snrpf	89	74.026	ENSPTRG00000047717	-	88	72.603	Pan_troglodytes
ENSPREG00000022635	snrpf	97	100.000	ENSPKIG00000014784	snrpf	92	100.000	Paramormyrops_kingsleyae
ENSPREG00000022635	snrpf	97	97.619	ENSPSIG00000016462	SNRPF	98	97.619	Pelodiscus_sinensis
ENSPREG00000022635	snrpf	97	98.810	ENSPMGG00000023548	snrpf	99	98.810	Periophthalmus_magnuspinnatus
ENSPREG00000022635	snrpf	97	97.619	ENSPEMG00000023326	Snrpf	98	97.619	Peromyscus_maniculatus_bairdii
ENSPREG00000022635	snrpf	98	98.824	ENSPLAG00000023932	snrpf	100	98.824	Poecilia_latipinna
ENSPREG00000022635	snrpf	98	98.824	ENSPMEG00000003377	snrpf	100	98.824	Poecilia_mexicana
ENSPREG00000022635	snrpf	97	97.619	ENSPPYG00000004847	-	98	97.619	Pongo_abelii
ENSPREG00000022635	snrpf	97	97.619	ENSPCOG00000023833	-	98	97.619	Propithecus_coquereli
ENSPREG00000022635	snrpf	97	97.619	ENSPVAG00000009036	SNRPF	98	97.619	Pteropus_vampyrus
ENSPREG00000022635	snrpf	98	98.824	ENSPNYG00000021712	snrpf	100	98.824	Pundamilia_nyererei
ENSPREG00000022635	snrpf	98	97.647	ENSPNAG00000019117	snrpf	100	97.647	Pygocentrus_nattereri
ENSPREG00000022635	snrpf	97	97.619	ENSRNOG00000005556	Snrpf	98	97.619	Rattus_norvegicus
ENSPREG00000022635	snrpf	84	94.521	ENSRBIG00000030414	-	85	94.521	Rhinopithecus_bieti
ENSPREG00000022635	snrpf	84	94.521	ENSRROG00000021975	-	85	94.521	Rhinopithecus_roxellana
ENSPREG00000022635	snrpf	84	58.108	YPR182W	SMX3	86	58.108	Saccharomyces_cerevisiae
ENSPREG00000022635	snrpf	84	82.192	ENSSBOG00000032297	-	83	82.192	Saimiri_boliviensis_boliviensis
ENSPREG00000022635	snrpf	91	74.684	ENSSBOG00000027638	-	89	77.215	Saimiri_boliviensis_boliviensis
ENSPREG00000022635	snrpf	97	97.619	ENSSBOG00000036179	-	98	97.619	Saimiri_boliviensis_boliviensis
ENSPREG00000022635	snrpf	97	96.429	ENSSBOG00000012868	-	98	96.429	Saimiri_boliviensis_boliviensis
ENSPREG00000022635	snrpf	97	97.619	ENSSHAG00000012294	SNRPF	76	97.619	Sarcophilus_harrisii
ENSPREG00000022635	snrpf	75	98.462	ENSSFOG00015021523	snrpf	97	98.462	Scleropages_formosus
ENSPREG00000022635	snrpf	100	96.552	ENSSMAG00000005533	snrpf	100	96.552	Scophthalmus_maximus
ENSPREG00000022635	snrpf	72	100.000	ENSSDUG00000016283	snrpf	75	100.000	Seriola_dumerili
ENSPREG00000022635	snrpf	97	100.000	ENSSLDG00000005119	snrpf	98	100.000	Seriola_lalandi_dorsalis
ENSPREG00000022635	snrpf	94	71.951	ENSSLDG00000003885	-	93	75.000	Seriola_lalandi_dorsalis
ENSPREG00000022635	snrpf	98	96.471	ENSSPUG00000014590	-	100	96.471	Sphenodon_punctatus
ENSPREG00000022635	snrpf	99	98.837	ENSSPAG00000003283	snrpf	98	98.837	Stegastes_partitus
ENSPREG00000022635	snrpf	97	97.619	ENSSSCG00000000895	SNRPF	98	97.619	Sus_scrofa
ENSPREG00000022635	snrpf	79	98.551	ENSTRUG00000014956	snrpf	100	98.551	Takifugu_rubripes
ENSPREG00000022635	snrpf	97	98.810	ENSTNIG00000012672	snrpf	98	98.810	Tetraodon_nigroviridis
ENSPREG00000022635	snrpf	84	69.863	ENSTTRG00000006070	SNRPF	85	69.863	Tursiops_truncatus
ENSPREG00000022635	snrpf	97	97.619	ENSUAMG00000008176	-	98	97.619	Ursus_americanus
ENSPREG00000022635	snrpf	100	85.057	ENSUAMG00000001101	-	88	86.842	Ursus_americanus
ENSPREG00000022635	snrpf	87	86.842	ENSUMAG00000006177	-	88	86.842	Ursus_maritimus
ENSPREG00000022635	snrpf	97	97.619	ENSUMAG00000003528	-	98	97.619	Ursus_maritimus
ENSPREG00000022635	snrpf	97	97.619	ENSVPAG00000008712	-	98	97.619	Vicugna_pacos
ENSPREG00000022635	snrpf	87	89.474	ENSVVUG00000023821	-	94	89.041	Vulpes_vulpes
ENSPREG00000022635	snrpf	84	74.667	ENSXETG00000021630	snrpf	86	74.667	Xenopus_tropicalis
ENSPREG00000022635	snrpf	100	98.851	ENSXCOG00000013860	snrpf	100	98.851	Xiphophorus_couchianus
ENSPREG00000022635	snrpf	98	98.824	ENSXMAG00000015448	snrpf	100	98.824	Xiphophorus_maculatus