EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000022653 (Gene tree)
Gene ID: 103464310
Gene Symbol: chd6
Alias: -
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 52564 bases
Position: chrLG5:2565548-2618111
Accession: 103464310
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000033467	ResIII	PF04851.15	1.7e-08	1	1
ENSPREP00000033441	ResIII	PF04851.15	2.3e-07	1	1
ENSPREP00000033441	BRK	PF07533.16	1.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000033820	-	10193	XM_008408311	ENSPREP00000033441	3390 (aa)	XP_008406533	UPI0004A462D7
ENSPRET00000033846	-	1647	-	ENSPREP00000033467	548 (aa)	-	-

Gene Model

Click here to download ENSPREG00000022653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000022653's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000022653	chd6	99	76.697	ENSPREG00000006473	chd9	70	71.093
ENSPREG00000022653	chd6	79	40.632	ENSPREG00000023250	smarca5	52	40.909
ENSPREG00000022653	chd6	72	79.146	ENSPREG00000014744	chd7	96	64.591
ENSPREG00000022653	chd6	93	44.424	ENSPREG00000011044	chd3	50	36.667
ENSPREG00000022653	chd6	94	41.556	ENSPREG00000004209	chd1	57	34.921
ENSPREG00000022653	chd6	77	41.686	ENSPREG00000017885	chd1l	55	42.278
ENSPREG00000022653	chd6	77	37.295	ENSPREG00000020337	hells	68	40.037
ENSPREG00000022653	chd6	75	36.184	ENSPREG00000018185	smarcad1a	51	36.822
ENSPREG00000022653	chd6	99	74.223	ENSPREG00000021867	chd8	63	73.077
ENSPREG00000022653	chd6	53	57.692	ENSPREG00000006449	-	85	56.604

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000022653	chd6	99	86.447	ENSG00000124177	CHD6	99	80.309	Homo_sapiens
ENSPREG00000022653	chd6	99	95.055	ENSAPOG00000013736	chd6	99	77.588	Acanthochromis_polyacanthus
ENSPREG00000022653	chd6	99	86.630	ENSAMEG00000009496	CHD6	74	71.616	Ailuropoda_melanoleuca
ENSPREG00000022653	chd6	99	95.055	ENSATEG00000005608	chd6	97	76.533	Anabas_testudineus
ENSPREG00000022653	chd6	99	87.546	ENSAPLG00000015592	CHD6	75	82.692	Anas_platyrhynchos
ENSPREG00000022653	chd6	98	79.667	ENSACAG00000006842	CHD6	73	69.176	Anolis_carolinensis
ENSPREG00000022653	chd6	99	86.447	ENSANAG00000037548	CHD6	99	81.319	Aotus_nancymaae
ENSPREG00000022653	chd6	94	89.883	ENSAMXG00000009576	chd6	85	70.456	Astyanax_mexicanus
ENSPREG00000022653	chd6	99	86.630	ENSBTAG00000005733	CHD6	69	74.411	Bos_taurus
ENSPREG00000022653	chd6	99	86.447	ENSCJAG00000017920	CHD6	99	81.319	Callithrix_jacchus
ENSPREG00000022653	chd6	99	86.630	ENSCAFG00000009236	CHD6	70	73.124	Canis_familiaris
ENSPREG00000022653	chd6	99	86.630	ENSCAFG00020012906	CHD6	96	83.333	Canis_lupus_dingo
ENSPREG00000022653	chd6	99	86.447	ENSCHIG00000017606	CHD6	72	75.037	Capra_hircus
ENSPREG00000022653	chd6	80	89.116	ENSTSYG00000014635	CHD6	70	76.271	Carlito_syrichta
ENSPREG00000022653	chd6	99	86.447	ENSCPOG00000015641	CHD6	75	71.108	Cavia_porcellus
ENSPREG00000022653	chd6	99	86.447	ENSCCAG00000036828	CHD6	99	81.319	Cebus_capucinus
ENSPREG00000022653	chd6	99	86.447	ENSCATG00000039248	CHD6	99	81.319	Cercocebus_atys
ENSPREG00000022653	chd6	99	86.264	ENSCLAG00000013743	CHD6	72	73.999	Chinchilla_lanigera
ENSPREG00000022653	chd6	99	86.447	ENSCSAG00000013997	CHD6	73	72.756	Chlorocebus_sabaeus
ENSPREG00000022653	chd6	99	82.234	ENSCHOG00000012647	CHD6	65	72.131	Choloepus_hoffmanni
ENSPREG00000022653	chd6	99	87.546	ENSCPBG00000019382	CHD6	75	75.343	Chrysemys_picta_bellii
ENSPREG00000022653	chd6	99	86.447	ENSCANG00000043435	CHD6	99	81.319	Colobus_angolensis_palliatus
ENSPREG00000022653	chd6	99	85.714	ENSCGRG00001002694	Chd6	72	74.652	Cricetulus_griseus_chok1gshd
ENSPREG00000022653	chd6	99	85.714	ENSCGRG00000006749	-	99	80.769	Cricetulus_griseus_crigri
ENSPREG00000022653	chd6	99	88.645	ENSDARG00000017244	chd6	86	73.840	Danio_rerio
ENSPREG00000022653	chd6	99	86.264	ENSDNOG00000004176	CHD6	73	72.768	Dasypus_novemcinctus
ENSPREG00000022653	chd6	99	86.765	ENSEASG00005023433	CHD6	96	85.029	Equus_asinus_asinus
ENSPREG00000022653	chd6	99	86.630	ENSECAG00000011761	CHD6	70	73.013	Equus_caballus
ENSPREG00000022653	chd6	99	87.912	ENSELUG00000012309	chd6	93	89.395	Esox_lucius
ENSPREG00000022653	chd6	99	86.630	ENSFCAG00000003572	CHD6	70	72.996	Felis_catus
ENSPREG00000022653	chd6	99	86.996	ENSFALG00000012563	CHD6	68	74.603	Ficedula_albicollis
ENSPREG00000022653	chd6	99	86.264	ENSFDAG00000013791	CHD6	73	72.692	Fukomys_damarensis
ENSPREG00000022653	chd6	89	90.722	ENSGMOG00000011715	chd6	86	82.609	Gadus_morhua
ENSPREG00000022653	chd6	94	91.860	ENSGACG00000000037	chd6	97	78.175	Gasterosteus_aculeatus
ENSPREG00000022653	chd6	61	83.582	ENSGAGG00000007475	-	79	84.012	Gopherus_agassizii
ENSPREG00000022653	chd6	99	86.447	ENSGGOG00000013123	CHD6	99	81.319	Gorilla_gorilla
ENSPREG00000022653	chd6	99	94.872	ENSHBUG00000014701	chd6	97	77.023	Haplochromis_burtoni
ENSPREG00000022653	chd6	99	86.264	ENSHGLG00000004548	CHD6	76	70.122	Heterocephalus_glaber_female
ENSPREG00000022653	chd6	99	86.264	ENSHGLG00100006401	CHD6	76	70.122	Heterocephalus_glaber_male
ENSPREG00000022653	chd6	99	88.462	ENSIPUG00000003692	chd6	83	77.184	Ictalurus_punctatus
ENSPREG00000022653	chd6	99	86.447	ENSSTOG00000013382	CHD6	69	74.130	Ictidomys_tridecemlineatus
ENSPREG00000022653	chd6	99	84.982	ENSLACG00000010881	CHD6	73	74.672	Latimeria_chalumnae
ENSPREG00000022653	chd6	99	89.011	ENSLOCG00000007386	chd6	78	78.571	Lepisosteus_oculatus
ENSPREG00000022653	chd6	99	86.264	ENSLAFG00000012144	CHD6	76	70.549	Loxodonta_africana
ENSPREG00000022653	chd6	99	86.447	ENSMFAG00000032830	CHD6	99	81.319	Macaca_fascicularis
ENSPREG00000022653	chd6	99	86.447	ENSMMUG00000020458	CHD6	99	81.319	Macaca_mulatta
ENSPREG00000022653	chd6	99	86.447	ENSMNEG00000040847	CHD6	99	81.319	Macaca_nemestrina
ENSPREG00000022653	chd6	99	86.447	ENSMLEG00000031965	CHD6	99	81.319	Mandrillus_leucophaeus
ENSPREG00000022653	chd6	99	94.322	ENSMAMG00000013111	chd6	97	76.535	Mastacembelus_armatus
ENSPREG00000022653	chd6	99	87.020	ENSMGAG00000001121	CHD6	75	72.324	Meleagris_gallopavo
ENSPREG00000022653	chd6	99	86.264	ENSMICG00000016641	CHD6	99	81.136	Microcebus_murinus
ENSPREG00000022653	chd6	99	85.714	ENSMOCG00000014004	-	78	81.601	Microtus_ochrogaster
ENSPREG00000022653	chd6	99	86.081	ENSMODG00000000720	-	75	75.071	Monodelphis_domestica
ENSPREG00000022653	chd6	99	85.714	MGP_CAROLIEiJ_G0024604	Chd6	86	82.745	Mus_caroli
ENSPREG00000022653	chd6	99	85.714	ENSMUSG00000057133	Chd6	86	82.843	Mus_musculus
ENSPREG00000022653	chd6	99	85.531	MGP_PahariEiJ_G0026048	Chd6	86	82.647	Mus_pahari
ENSPREG00000022653	chd6	99	85.714	MGP_SPRETEiJ_G0025526	Chd6	86	82.843	Mus_spretus
ENSPREG00000022653	chd6	99	86.630	ENSMPUG00000017695	CHD6	71	73.558	Mustela_putorius_furo
ENSPREG00000022653	chd6	99	86.264	ENSMLUG00000016247	CHD6	69	74.064	Myotis_lucifugus
ENSPREG00000022653	chd6	99	95.018	ENSNBRG00000013839	chd6	97	83.004	Neolamprologus_brichardi
ENSPREG00000022653	chd6	99	83.333	ENSNLEG00000006496	CHD6	74	75.097	Nomascus_leucogenys
ENSPREG00000022653	chd6	99	80.220	ENSOPRG00000013376	-	75	69.638	Ochotona_princeps
ENSPREG00000022653	chd6	99	95.055	ENSONIG00000000393	chd6	92	89.153	Oreochromis_niloticus
ENSPREG00000022653	chd6	99	84.432	ENSOANG00000014347	CHD6	63	72.407	Ornithorhynchus_anatinus
ENSPREG00000022653	chd6	99	86.447	ENSOCUG00000012394	CHD6	71	70.226	Oryctolagus_cuniculus
ENSPREG00000022653	chd6	99	93.956	ENSORLG00020021891	chd6	95	94.600	Oryzias_latipes_hni
ENSPREG00000022653	chd6	99	86.447	ENSOGAG00000002427	CHD6	73	73.770	Otolemur_garnettii
ENSPREG00000022653	chd6	99	86.447	ENSOARG00000002597	CHD6	67	80.727	Ovis_aries
ENSPREG00000022653	chd6	99	86.630	ENSPPRG00000014756	CHD6	73	72.931	Panthera_pardus
ENSPREG00000022653	chd6	99	86.630	ENSPTIG00000011094	CHD6	70	72.803	Panthera_tigris_altaica
ENSPREG00000022653	chd6	99	86.447	ENSPTRG00000013504	CHD6	99	81.319	Pan_troglodytes
ENSPREG00000022653	chd6	99	86.447	ENSPANG00000025554	CHD6	99	81.319	Papio_anubis
ENSPREG00000022653	chd6	99	89.194	ENSPKIG00000005578	chd6	83	75.356	Paramormyrops_kingsleyae
ENSPREG00000022653	chd6	99	94.128	ENSPMGG00000014877	chd6	94	89.474	Periophthalmus_magnuspinnatus
ENSPREG00000022653	chd6	99	85.348	ENSPEMG00000014672	-	96	82.163	Peromyscus_maniculatus_bairdii
ENSPREG00000022653	chd6	99	86.081	ENSPCIG00000028037	CHD6	73	72.687	Phascolarctos_cinereus
ENSPREG00000022653	chd6	100	97.585	ENSPLAG00000003128	chd6	100	97.585	Poecilia_latipinna
ENSPREG00000022653	chd6	99	86.447	ENSPPYG00000011016	CHD6	75	71.875	Pongo_abelii
ENSPREG00000022653	chd6	99	86.447	ENSPCOG00000001089	CHD6	99	81.319	Propithecus_coquereli
ENSPREG00000022653	chd6	99	94.872	ENSPNYG00000022516	chd6	97	80.436	Pundamilia_nyererei
ENSPREG00000022653	chd6	99	89.194	ENSPNAG00000012825	chd6	83	72.516	Pygocentrus_nattereri
ENSPREG00000022653	chd6	99	85.531	ENSRNOG00000016744	Chd6	71	80.285	Rattus_norvegicus
ENSPREG00000022653	chd6	99	86.447	ENSSBOG00000022089	CHD6	99	81.319	Saimiri_boliviensis_boliviensis
ENSPREG00000022653	chd6	99	86.081	ENSSHAG00000017072	CHD6	73	72.623	Sarcophilus_harrisii
ENSPREG00000022653	chd6	99	88.828	ENSSFOG00015012920	chd6	89	86.293	Scleropages_formosus
ENSPREG00000022653	chd6	99	86.447	ENSSSCG00000007360	CHD6	71	73.124	Sus_scrofa
ENSPREG00000022653	chd6	99	87.363	ENSTGUG00000003179	CHD6	74	83.948	Taeniopygia_guttata
ENSPREG00000022653	chd6	99	92.491	ENSTNIG00000017487	chd6	98	82.303	Tetraodon_nigroviridis
ENSPREG00000022653	chd6	99	84.615	ENSTTRG00000013438	CHD6	65	79.950	Tursiops_truncatus
ENSPREG00000022653	chd6	99	86.630	ENSUAMG00000024036	CHD6	96	83.333	Ursus_americanus
ENSPREG00000022653	chd6	99	86.630	ENSUMAG00000002017	CHD6	96	83.333	Ursus_maritimus
ENSPREG00000022653	chd6	98	82.430	ENSVPAG00000007941	CHD6	66	66.231	Vicugna_pacos
ENSPREG00000022653	chd6	99	86.630	ENSVVUG00000029164	CHD6	70	73.124	Vulpes_vulpes
ENSPREG00000022653	chd6	99	65.751	ENSXETG00000021445	chd6	72	67.256	Xenopus_tropicalis