EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000023250 (Gene tree)
Gene ID: 103471217
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 10907 bases
Position: chrLG1:30199881-30210787
Accession: 103471217
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000034335	ResIII	PF04851.15	6.7e-11	1	1
ENSPREP00000034336	ResIII	PF04851.15	6.9e-11	1	1
ENSPREP00000034335	DEAD	PF00270.29	2.4e-06	1	1
ENSPREP00000034336	DEAD	PF00270.29	2.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000034718	-	3330	XM_008420070	ENSPREP00000034335	1035 (aa)	XP_008418292	UPI0004A28417
ENSPRET00000034719	-	3336	-	ENSPREP00000034336	1037 (aa)	-	-

Gene Model

Click here to download ENSPREG00000023250's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000023250's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000023250	smarca5	52	41.273	ENSPREG00000017885	chd1l	61	41.273
ENSPREG00000023250	smarca5	50	39.856	ENSPREG00000014744	chd7	95	36.992
ENSPREG00000023250	smarca5	52	40.909	ENSPREG00000022653	chd6	79	40.632

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000023250	smarca5	95	82.727	ENSG00000102038	SMARCA1	92	83.640	Homo_sapiens
ENSPREG00000023250	smarca5	100	97.394	ENSAPOG00000016035	smarca5	100	97.394	Acanthochromis_polyacanthus
ENSPREG00000023250	smarca5	95	81.936	ENSAMEG00000015218	SMARCA1	92	82.727	Ailuropoda_melanoleuca
ENSPREG00000023250	smarca5	87	98.224	ENSACIG00000016982	smarca5	100	98.224	Amphilophus_citrinellus
ENSPREG00000023250	smarca5	100	97.394	ENSAOCG00000015578	smarca5	100	97.394	Amphiprion_ocellaris
ENSPREG00000023250	smarca5	100	97.394	ENSAPEG00000011117	smarca5	100	97.394	Amphiprion_percula
ENSPREG00000023250	smarca5	100	97.295	ENSATEG00000012894	smarca5	100	97.295	Anabas_testudineus
ENSPREG00000023250	smarca5	95	84.012	ENSAPLG00000013149	SMARCA1	99	84.254	Anas_platyrhynchos
ENSPREG00000023250	smarca5	98	82.157	ENSACAG00000011376	SMARCA1	93	84.867	Anolis_carolinensis
ENSPREG00000023250	smarca5	95	78.081	ENSANAG00000023098	SMARCA1	92	78.937	Aotus_nancymaae
ENSPREG00000023250	smarca5	100	97.297	ENSACLG00000025356	smarca5	100	97.297	Astatotilapia_calliptera
ENSPREG00000023250	smarca5	100	90.874	ENSAMXG00000005709	smarca5	100	90.550	Astyanax_mexicanus
ENSPREG00000023250	smarca5	90	84.425	ENSAMXG00000011227	smarca1	99	85.645	Astyanax_mexicanus
ENSPREG00000023250	smarca5	95	83.078	ENSBTAG00000002292	SMARCA1	90	83.596	Bos_taurus
ENSPREG00000023250	smarca5	96	62.500	WBGene00002169	isw-1	95	63.777	Caenorhabditis_elegans
ENSPREG00000023250	smarca5	95	83.401	ENSCJAG00000002868	SMARCA1	92	83.640	Callithrix_jacchus
ENSPREG00000023250	smarca5	95	73.585	ENSCAFG00000018673	SMARCA1	99	75.410	Canis_familiaris
ENSPREG00000023250	smarca5	95	82.929	ENSCAFG00020001751	SMARCA1	92	83.742	Canis_lupus_dingo
ENSPREG00000023250	smarca5	95	82.776	ENSCHIG00000009837	SMARCA1	92	83.333	Capra_hircus
ENSPREG00000023250	smarca5	95	82.929	ENSTSYG00000004240	SMARCA1	94	84.624	Carlito_syrichta
ENSPREG00000023250	smarca5	95	81.325	ENSCPOG00000013601	SMARCA1	93	82.114	Cavia_porcellus
ENSPREG00000023250	smarca5	95	80.000	ENSCCAG00000030817	SMARCA1	92	80.879	Cebus_capucinus
ENSPREG00000023250	smarca5	94	83.436	ENSCATG00000015921	SMARCA1	90	84.878	Cercocebus_atys
ENSPREG00000023250	smarca5	95	82.020	ENSCLAG00000002171	SMARCA1	92	82.822	Chinchilla_lanigera
ENSPREG00000023250	smarca5	95	82.727	ENSCSAG00000008460	SMARCA1	92	83.640	Chlorocebus_sabaeus
ENSPREG00000023250	smarca5	95	83.992	ENSCPBG00000001146	SMARCA1	92	84.560	Chrysemys_picta_bellii
ENSPREG00000023250	smarca5	96	73.831	ENSCING00000004110	swi/snf	97	75.204	Ciona_intestinalis
ENSPREG00000023250	smarca5	96	73.366	ENSCSAVG00000004620	-	99	75.727	Ciona_savignyi
ENSPREG00000023250	smarca5	95	82.828	ENSCANG00000007183	SMARCA1	92	83.742	Colobus_angolensis_palliatus
ENSPREG00000023250	smarca5	95	81.818	ENSCGRG00001010776	Smarca1	92	82.618	Cricetulus_griseus_chok1gshd
ENSPREG00000023250	smarca5	95	81.358	ENSCGRG00000015301	Smarca1	94	83.157	Cricetulus_griseus_crigri
ENSPREG00000023250	smarca5	100	96.329	ENSCSEG00000000328	smarca5	100	96.329	Cynoglossus_semilaevis
ENSPREG00000023250	smarca5	100	98.647	ENSCVAG00000008668	smarca5	100	98.647	Cyprinodon_variegatus
ENSPREG00000023250	smarca5	100	91.040	ENSDARG00000052348	smarca5	100	90.541	Danio_rerio
ENSPREG00000023250	smarca5	94	82.583	ENSDARG00000012776	smarca1	96	82.748	Danio_rerio
ENSPREG00000023250	smarca5	93	83.540	ENSDNOG00000004315	SMARCA1	91	84.558	Dasypus_novemcinctus
ENSPREG00000023250	smarca5	97	81.057	ENSDORG00000009270	Smarca1	90	84.558	Dipodomys_ordii
ENSPREG00000023250	smarca5	95	74.573	FBgn0011604	Iswi	97	74.100	Drosophila_melanogaster
ENSPREG00000023250	smarca5	79	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSPREG00000023250	smarca5	97	80.952	ENSEBUG00000001239	smarca5	96	82.631	Eptatretus_burgeri
ENSPREG00000023250	smarca5	95	79.049	ENSEASG00005008218	SMARCA1	99	79.675	Equus_asinus_asinus
ENSPREG00000023250	smarca5	95	82.828	ENSECAG00000012106	SMARCA1	92	83.640	Equus_caballus
ENSPREG00000023250	smarca5	77	84.106	ENSEEUG00000014927	SMARCA1	80	84.106	Erinaceus_europaeus
ENSPREG00000023250	smarca5	94	84.426	ENSELUG00000010515	smarca1	95	85.294	Esox_lucius
ENSPREG00000023250	smarca5	95	82.828	ENSFCAG00000018496	SMARCA1	92	83.640	Felis_catus
ENSPREG00000023250	smarca5	88	85.120	ENSFALG00000000209	SMARCA1	98	85.120	Ficedula_albicollis
ENSPREG00000023250	smarca5	94	81.911	ENSFDAG00000009818	SMARCA1	93	83.176	Fukomys_damarensis
ENSPREG00000023250	smarca5	100	97.228	ENSFHEG00000007687	smarca5	100	97.228	Fundulus_heteroclitus
ENSPREG00000023250	smarca5	96	82.100	ENSGALG00000008431	SMARCA1	95	85.162	Gallus_gallus
ENSPREG00000023250	smarca5	100	99.710	ENSGAFG00000017731	smarca5	100	99.710	Gambusia_affinis
ENSPREG00000023250	smarca5	94	84.568	ENSGAGG00000023575	SMARCA1	99	84.568	Gopherus_agassizii
ENSPREG00000023250	smarca5	70	96.000	ENSGGOG00000012841	-	91	79.883	Gorilla_gorilla
ENSPREG00000023250	smarca5	95	81.919	ENSHGLG00000003080	SMARCA1	92	82.720	Heterocephalus_glaber_female
ENSPREG00000023250	smarca5	95	81.426	ENSHGLG00100001102	SMARCA1	98	82.215	Heterocephalus_glaber_male
ENSPREG00000023250	smarca5	100	96.332	ENSHCOG00000005458	smarca5	100	96.332	Hippocampus_comes
ENSPREG00000023250	smarca5	96	82.423	ENSIPUG00000016905	Smarca1	99	84.324	Ictalurus_punctatus
ENSPREG00000023250	smarca5	100	90.347	ENSIPUG00000005229	SMARCA5	96	94.456	Ictalurus_punctatus
ENSPREG00000023250	smarca5	95	82.727	ENSSTOG00000014524	SMARCA1	95	83.214	Ictidomys_tridecemlineatus
ENSPREG00000023250	smarca5	94	82.510	ENSJJAG00000002593	Smarca1	93	82.197	Jaculus_jaculus
ENSPREG00000023250	smarca5	100	97.971	ENSKMAG00000003777	smarca5	100	97.971	Kryptolebias_marmoratus
ENSPREG00000023250	smarca5	100	95.652	ENSLBEG00000018112	smarca5	100	95.459	Labrus_bergylta
ENSPREG00000023250	smarca5	94	95.701	ENSLBEG00000013295	SMARCA1	100	97.342	Labrus_bergylta
ENSPREG00000023250	smarca5	94	85.464	ENSLACG00000016697	SMARCA1	95	85.464	Latimeria_chalumnae
ENSPREG00000023250	smarca5	94	85.714	ENSLOCG00000014591	smarca1	95	85.875	Lepisosteus_oculatus
ENSPREG00000023250	smarca5	95	81.627	ENSLAFG00000000896	SMARCA1	98	82.419	Loxodonta_africana
ENSPREG00000023250	smarca5	95	82.727	ENSMFAG00000002117	SMARCA1	93	84.697	Macaca_fascicularis
ENSPREG00000023250	smarca5	94	83.436	ENSMMUG00000008818	SMARCA1	97	84.665	Macaca_mulatta
ENSPREG00000023250	smarca5	94	83.436	ENSMNEG00000041768	SMARCA1	93	84.697	Macaca_nemestrina
ENSPREG00000023250	smarca5	95	82.727	ENSMLEG00000043198	SMARCA1	92	83.640	Mandrillus_leucophaeus
ENSPREG00000023250	smarca5	100	97.016	ENSMAMG00000014294	smarca5	100	97.016	Mastacembelus_armatus
ENSPREG00000023250	smarca5	100	97.297	ENSMZEG00005009369	smarca5	100	97.297	Maylandia_zebra
ENSPREG00000023250	smarca5	95	82.998	ENSMGAG00000007042	SMARCA1	97	83.232	Meleagris_gallopavo
ENSPREG00000023250	smarca5	94	81.781	ENSMAUG00000008133	Smarca1	90	83.051	Mesocricetus_auratus
ENSPREG00000023250	smarca5	95	83.131	ENSMICG00000015768	SMARCA1	92	83.947	Microcebus_murinus
ENSPREG00000023250	smarca5	95	81.005	ENSMOCG00000009464	Smarca1	92	81.790	Microtus_ochrogaster
ENSPREG00000023250	smarca5	96	96.173	ENSMMOG00000005547	smarca5	100	96.173	Mola_mola
ENSPREG00000023250	smarca5	94	84.410	ENSMODG00000013187	-	94	84.410	Monodelphis_domestica
ENSPREG00000023250	smarca5	100	96.818	ENSMALG00000002081	smarca5	100	96.818	Monopterus_albus
ENSPREG00000023250	smarca5	95	81.307	MGP_CAROLIEiJ_G0033034	Smarca1	92	82.197	Mus_caroli
ENSPREG00000023250	smarca5	95	81.407	ENSMUSG00000031099	Smarca1	92	82.197	Mus_musculus
ENSPREG00000023250	smarca5	95	81.579	MGP_PahariEiJ_G0031579	Smarca1	92	82.480	Mus_pahari
ENSPREG00000023250	smarca5	95	81.407	MGP_SPRETEiJ_G0034192	Smarca1	92	82.197	Mus_spretus
ENSPREG00000023250	smarca5	95	81.936	ENSMPUG00000017423	SMARCA1	87	82.727	Mustela_putorius_furo
ENSPREG00000023250	smarca5	95	80.677	ENSMLUG00000029614	SMARCA1	93	81.149	Myotis_lucifugus
ENSPREG00000023250	smarca5	94	82.293	ENSNGAG00000006492	Smarca1	90	83.581	Nannospalax_galili
ENSPREG00000023250	smarca5	96	98.090	ENSNBRG00000004463	smarca5	100	98.090	Neolamprologus_brichardi
ENSPREG00000023250	smarca5	94	82.564	ENSNLEG00000015179	SMARCA1	94	83.970	Nomascus_leucogenys
ENSPREG00000023250	smarca5	89	76.642	ENSMEUG00000008819	SMARCA1	97	76.642	Notamacropus_eugenii
ENSPREG00000023250	smarca5	96	80.119	ENSODEG00000012163	SMARCA1	90	82.965	Octodon_degus
ENSPREG00000023250	smarca5	100	97.394	ENSONIG00000009993	smarca5	100	97.394	Oreochromis_niloticus
ENSPREG00000023250	smarca5	94	84.979	ENSOANG00000002862	SMARCA1	99	84.979	Ornithorhynchus_anatinus
ENSPREG00000023250	smarca5	95	83.080	ENSOCUG00000001047	SMARCA1	92	83.640	Oryctolagus_cuniculus
ENSPREG00000023250	smarca5	100	96.439	ENSORLG00000021998	smarca5	100	96.439	Oryzias_latipes
ENSPREG00000023250	smarca5	100	96.435	ENSORLG00020017679	smarca5	100	96.435	Oryzias_latipes_hni
ENSPREG00000023250	smarca5	100	96.818	ENSORLG00015017210	smarca5	100	96.818	Oryzias_latipes_hsok
ENSPREG00000023250	smarca5	100	96.911	ENSOMEG00000000086	smarca5	100	96.911	Oryzias_melastigma
ENSPREG00000023250	smarca5	93	83.368	ENSOGAG00000004399	SMARCA1	90	84.017	Otolemur_garnettii
ENSPREG00000023250	smarca5	94	83.333	ENSOARG00000014638	SMARCA1	99	83.333	Ovis_aries
ENSPREG00000023250	smarca5	95	82.727	ENSPPAG00000034647	SMARCA1	92	83.640	Pan_paniscus
ENSPREG00000023250	smarca5	95	82.929	ENSPPRG00000008929	SMARCA1	92	83.742	Panthera_pardus
ENSPREG00000023250	smarca5	95	81.033	ENSPTIG00000000915	SMARCA1	96	81.809	Panthera_tigris_altaica
ENSPREG00000023250	smarca5	95	82.727	ENSPTRG00000049876	SMARCA1	90	84.878	Pan_troglodytes
ENSPREG00000023250	smarca5	95	82.727	ENSPANG00000003871	SMARCA1	92	83.640	Papio_anubis
ENSPREG00000023250	smarca5	95	82.419	ENSPKIG00000013411	smarca1	96	84.454	Paramormyrops_kingsleyae
ENSPREG00000023250	smarca5	94	84.568	ENSPSIG00000010101	SMARCA1	99	84.568	Pelodiscus_sinensis
ENSPREG00000023250	smarca5	94	82.088	ENSPEMG00000017503	Smarca1	90	83.369	Peromyscus_maniculatus_bairdii
ENSPREG00000023250	smarca5	94	84.836	ENSPCIG00000015460	SMARCA1	96	84.836	Phascolarctos_cinereus
ENSPREG00000023250	smarca5	100	99.807	ENSPFOG00000007649	smarca5	100	99.807	Poecilia_formosa
ENSPREG00000023250	smarca5	100	99.807	ENSPLAG00000003363	smarca5	100	99.807	Poecilia_latipinna
ENSPREG00000023250	smarca5	100	99.903	ENSPMEG00000019849	smarca5	100	99.903	Poecilia_mexicana
ENSPREG00000023250	smarca5	95	79.899	ENSPPYG00000020703	SMARCA1	92	80.777	Pongo_abelii
ENSPREG00000023250	smarca5	75	76.502	ENSPCOG00000020722	SMARCA1	93	80.119	Propithecus_coquereli
ENSPREG00000023250	smarca5	87	83.355	ENSPVAG00000003805	SMARCA1	84	83.443	Pteropus_vampyrus
ENSPREG00000023250	smarca5	58	99.211	ENSPNYG00000012299	smarca5	93	99.211	Pundamilia_nyererei
ENSPREG00000023250	smarca5	95	81.515	ENSRNOG00000003762	Smarca1	92	82.311	Rattus_norvegicus
ENSPREG00000023250	smarca5	95	82.828	ENSRROG00000034167	SMARCA1	92	83.742	Rhinopithecus_roxellana
ENSPREG00000023250	smarca5	94	83.538	ENSSBOG00000020641	SMARCA1	99	83.538	Saimiri_boliviensis_boliviensis
ENSPREG00000023250	smarca5	94	79.733	ENSSHAG00000013518	SMARCA1	99	79.733	Sarcophilus_harrisii
ENSPREG00000023250	smarca5	97	91.118	ENSSFOG00015016794	smarca5	100	93.093	Scleropages_formosus
ENSPREG00000023250	smarca5	95	84.654	ENSSFOG00015009043	smarca1	96	85.246	Scleropages_formosus
ENSPREG00000023250	smarca5	100	95.661	ENSSMAG00000004801	smarca5	100	95.468	Scophthalmus_maximus
ENSPREG00000023250	smarca5	100	97.005	ENSSDUG00000020690	smarca5	100	97.005	Seriola_dumerili
ENSPREG00000023250	smarca5	100	97.005	ENSSLDG00000025190	smarca5	100	97.005	Seriola_lalandi_dorsalis
ENSPREG00000023250	smarca5	79	84.698	ENSSARG00000000842	SMARCA1	81	84.698	Sorex_araneus
ENSPREG00000023250	smarca5	98	81.379	ENSSPUG00000000590	SMARCA1	93	85.057	Sphenodon_punctatus
ENSPREG00000023250	smarca5	100	97.297	ENSSPAG00000002894	smarca5	100	97.297	Stegastes_partitus
ENSPREG00000023250	smarca5	93	83.644	ENSSSCG00000012649	SMARCA1	95	83.214	Sus_scrofa
ENSPREG00000023250	smarca5	95	83.707	ENSTGUG00000003899	-	99	83.947	Taeniopygia_guttata
ENSPREG00000023250	smarca5	100	95.652	ENSTRUG00000014094	smarca5	100	95.652	Takifugu_rubripes
ENSPREG00000023250	smarca5	98	94.783	ENSTNIG00000017717	smarca5	97	95.149	Tetraodon_nigroviridis
ENSPREG00000023250	smarca5	86	82.373	ENSTBEG00000014973	SMARCA1	89	82.525	Tupaia_belangeri
ENSPREG00000023250	smarca5	94	79.289	ENSTTRG00000006168	SMARCA1	96	80.336	Tursiops_truncatus
ENSPREG00000023250	smarca5	95	82.727	ENSUAMG00000020201	SMARCA1	92	83.538	Ursus_americanus
ENSPREG00000023250	smarca5	97	77.668	ENSUMAG00000004073	SMARCA1	95	85.432	Ursus_maritimus
ENSPREG00000023250	smarca5	73	86.842	ENSVPAG00000010492	-	77	87.543	Vicugna_pacos
ENSPREG00000023250	smarca5	95	82.929	ENSVVUG00000008878	SMARCA1	98	84.984	Vulpes_vulpes
ENSPREG00000023250	smarca5	95	83.927	ENSXETG00000001526	smarca1	98	84.497	Xenopus_tropicalis
ENSPREG00000023250	smarca5	97	99.702	ENSXCOG00000011170	smarca5	100	99.702	Xiphophorus_couchianus
ENSPREG00000023250	smarca5	100	99.614	ENSXMAG00000009678	smarca5	100	99.614	Xiphophorus_maculatus