EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000002383 (Gene tree)
Gene ID: 102451375
Gene Symbol: -
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 93360 bases
Position: chrJH205201.1:283272-376631
Accession: 102451375
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000002421	ResIII	PF04851.15	8.3e-11	1	1
ENSPSIP00000002419	ResIII	PF04851.15	1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000002429	-	2923	XM_006111006	ENSPSIP00000002421	821 (aa)	XP_006111068	K7F311
ENSPSIT00000002427	-	4593	XM_006111004	ENSPSIP00000002419	918 (aa)	XP_006111066	K7F309

Gene Model

Click here to download ENSPSIG00000002383's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000002383's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000002383	-	61	32.359	ENSPSIG00000012595	CHD1L	50	32.359
ENSPSIG00000002383	-	82	41.414	ENSPSIG00000003258	RAD54L	89	41.499

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000002383	-	98	74.037	ENSG00000197275	RAD54B	100	69.750	Homo_sapiens
ENSPSIG00000002383	-	89	74.038	ENSG00000265817	FSBP	100	74.038	Homo_sapiens
ENSPSIG00000002383	-	97	72.898	ENSAMEG00000005834	-	99	67.721	Ailuropoda_melanoleuca
ENSPSIG00000002383	-	96	61.202	ENSACIG00000013005	rad54b	99	56.237	Amphilophus_citrinellus
ENSPSIG00000002383	-	96	61.577	ENSAOCG00000008523	rad54b	99	56.217	Amphiprion_ocellaris
ENSPSIG00000002383	-	96	60.831	ENSAPEG00000001673	rad54b	99	56.000	Amphiprion_percula
ENSPSIG00000002383	-	95	61.820	ENSATEG00000001527	rad54b	99	56.399	Anabas_testudineus
ENSPSIG00000002383	-	100	80.535	ENSAPLG00000014366	-	99	76.764	Anas_platyrhynchos
ENSPSIG00000002383	-	97	77.456	ENSACAG00000003671	-	98	77.456	Anolis_carolinensis
ENSPSIG00000002383	-	79	74.730	ENSANAG00000019528	-	100	74.730	Aotus_nancymaae
ENSPSIG00000002383	-	96	61.384	ENSACLG00000007826	rad54b	92	61.384	Astatotilapia_calliptera
ENSPSIG00000002383	-	95	60.152	ENSAMXG00000039985	rad54b	94	60.025	Astyanax_mexicanus
ENSPSIG00000002383	-	98	73.225	ENSBTAG00000000632	RAD54B	99	67.391	Bos_taurus
ENSPSIG00000002383	-	89	35.013	WBGene00013792	Y116A8C.13	83	35.013	Caenorhabditis_elegans
ENSPSIG00000002383	-	98	73.168	ENSCJAG00000000080	-	100	73.764	Callithrix_jacchus
ENSPSIG00000002383	-	98	71.728	ENSCAFG00000009179	RAD54B	99	67.101	Canis_familiaris
ENSPSIG00000002383	-	98	71.605	ENSCAFG00020012084	-	99	66.992	Canis_lupus_dingo
ENSPSIG00000002383	-	98	72.727	ENSCHIG00000008230	-	99	66.847	Capra_hircus
ENSPSIG00000002383	-	98	72.457	ENSTSYG00000013234	-	99	68.702	Carlito_syrichta
ENSPSIG00000002383	-	98	72.615	ENSCPOG00000011643	-	99	67.283	Cavia_porcellus
ENSPSIG00000002383	-	98	73.144	ENSCCAG00000011754	-	100	73.626	Cebus_capucinus
ENSPSIG00000002383	-	99	73.039	ENSCATG00000030661	-	100	73.626	Cercocebus_atys
ENSPSIG00000002383	-	98	73.540	ENSCLAG00000010476	-	100	68.152	Chinchilla_lanigera
ENSPSIG00000002383	-	99	72.917	ENSCSAG00000012712	-	100	69.381	Chlorocebus_sabaeus
ENSPSIG00000002383	-	100	90.511	ENSCPBG00000003204	-	99	90.459	Chrysemys_picta_bellii
ENSPSIG00000002383	-	99	72.917	ENSCANG00000017939	-	100	73.626	Colobus_angolensis_palliatus
ENSPSIG00000002383	-	98	69.738	ENSCGRG00001020184	Rad54b	99	64.776	Cricetulus_griseus_chok1gshd
ENSPSIG00000002383	-	98	68.991	ENSCGRG00000016752	Rad54b	99	64.558	Cricetulus_griseus_crigri
ENSPSIG00000002383	-	95	60.127	ENSCSEG00000001601	rad54b	99	60.051	Cynoglossus_semilaevis
ENSPSIG00000002383	-	96	63.145	ENSCVAG00000009200	rad54b	99	58.009	Cyprinodon_variegatus
ENSPSIG00000002383	-	98	59.030	ENSDARG00000092134	rad54b	99	61.751	Danio_rerio
ENSPSIG00000002383	-	98	74.037	ENSDNOG00000015535	-	99	68.879	Dasypus_novemcinctus
ENSPSIG00000002383	-	98	72.105	ENSDORG00000002492	Rad54b	99	66.594	Dipodomys_ordii
ENSPSIG00000002383	-	84	74.783	ENSETEG00000010605	-	100	69.173	Echinops_telfairi
ENSPSIG00000002383	-	99	46.055	ENSEBUG00000009104	rad54b	98	46.195	Eptatretus_burgeri
ENSPSIG00000002383	-	98	70.932	ENSEASG00005004021	-	99	66.629	Equus_asinus_asinus
ENSPSIG00000002383	-	98	71.357	ENSECAG00000021949	-	99	67.065	Equus_caballus
ENSPSIG00000002383	-	80	69.811	ENSEEUG00000008056	-	79	69.811	Erinaceus_europaeus
ENSPSIG00000002383	-	95	60.203	ENSELUG00000009287	rad54b	99	54.040	Esox_lucius
ENSPSIG00000002383	-	97	72.807	ENSFCAG00000015513	-	99	72.865	Felis_catus
ENSPSIG00000002383	-	99	79.172	ENSFALG00000005467	-	99	75.435	Ficedula_albicollis
ENSPSIG00000002383	-	98	73.724	ENSFDAG00000020541	-	100	67.861	Fukomys_damarensis
ENSPSIG00000002383	-	96	60.804	ENSFHEG00000014382	rad54b	87	60.979	Fundulus_heteroclitus
ENSPSIG00000002383	-	95	59.273	ENSGMOG00000014774	rad54b	98	59.273	Gadus_morhua
ENSPSIG00000002383	-	100	79.319	ENSGALG00000043597	RAD54B	99	75.299	Gallus_gallus
ENSPSIG00000002383	-	95	62.705	ENSGAFG00000007901	rad54b	99	57.112	Gambusia_affinis
ENSPSIG00000002383	-	96	60.750	ENSGACG00000009128	rad54b	100	55.769	Gasterosteus_aculeatus
ENSPSIG00000002383	-	100	89.659	ENSGAGG00000018747	-	99	89.554	Gopherus_agassizii
ENSPSIG00000002383	-	99	73.464	ENSGGOG00000023516	-	99	69.902	Gorilla_gorilla
ENSPSIG00000002383	-	96	61.307	ENSHBUG00000016017	rad54b	99	55.367	Haplochromis_burtoni
ENSPSIG00000002383	-	98	72.682	ENSHGLG00000008263	RAD54B	99	67.281	Heterocephalus_glaber_female
ENSPSIG00000002383	-	98	71.779	ENSHGLG00100008108	-	99	66.523	Heterocephalus_glaber_male
ENSPSIG00000002383	-	97	59.476	ENSHCOG00000004764	rad54b	98	58.200	Hippocampus_comes
ENSPSIG00000002383	-	95	59.724	ENSIPUG00000018531	rad54b	99	54.286	Ictalurus_punctatus
ENSPSIG00000002383	-	98	69.900	ENSSTOG00000010791	-	99	65.543	Ictidomys_tridecemlineatus
ENSPSIG00000002383	-	98	72.050	ENSJJAG00000010314	Rad54b	99	66.558	Jaculus_jaculus
ENSPSIG00000002383	-	97	59.535	ENSKMAG00000004744	rad54b	95	59.107	Kryptolebias_marmoratus
ENSPSIG00000002383	-	91	71.448	ENSLACG00000000859	-	100	71.448	Latimeria_chalumnae
ENSPSIG00000002383	-	99	65.079	ENSLOCG00000010100	rad54b	97	64.563	Lepisosteus_oculatus
ENSPSIG00000002383	-	98	71.588	ENSLAFG00000015315	-	99	71.588	Loxodonta_africana
ENSPSIG00000002383	-	99	72.917	ENSMFAG00000031629	-	100	73.489	Macaca_fascicularis
ENSPSIG00000002383	-	99	72.917	ENSMMUG00000005659	-	100	69.423	Macaca_mulatta
ENSPSIG00000002383	-	99	72.794	ENSMNEG00000016408	-	100	69.206	Macaca_nemestrina
ENSPSIG00000002383	-	99	73.039	ENSMLEG00000006946	-	100	69.423	Mandrillus_leucophaeus
ENSPSIG00000002383	-	95	61.481	ENSMAMG00000012269	rad54b	99	56.695	Mastacembelus_armatus
ENSPSIG00000002383	-	96	61.307	ENSMZEG00005005281	rad54b	95	61.258	Maylandia_zebra
ENSPSIG00000002383	-	100	79.319	ENSMGAG00000012024	-	99	75.679	Meleagris_gallopavo
ENSPSIG00000002383	-	99	69.902	ENSMAUG00000013586	Rad54b	99	65.758	Mesocricetus_auratus
ENSPSIG00000002383	-	98	73.101	ENSMICG00000000754	-	92	73.101	Microcebus_murinus
ENSPSIG00000002383	-	98	68.657	ENSMOCG00000020035	Rad54b	99	64.161	Microtus_ochrogaster
ENSPSIG00000002383	-	95	60.606	ENSMMOG00000003394	rad54b	89	60.530	Mola_mola
ENSPSIG00000002383	-	98	74.065	ENSMODG00000007343	-	99	74.065	Monodelphis_domestica
ENSPSIG00000002383	-	78	61.719	ENSMALG00000001520	rad54b	99	61.719	Monopterus_albus
ENSPSIG00000002383	-	98	69.202	MGP_CAROLIEiJ_G0025810	Rad54b	99	64.340	Mus_caroli
ENSPSIG00000002383	-	98	69.825	ENSMUSG00000078773	Rad54b	99	64.885	Mus_musculus
ENSPSIG00000002383	-	98	68.867	MGP_PahariEiJ_G0023933	Rad54b	99	64.122	Mus_pahari
ENSPSIG00000002383	-	98	69.701	MGP_SPRETEiJ_G0026758	Rad54b	99	64.924	Mus_spretus
ENSPSIG00000002383	-	97	71.805	ENSMPUG00000008878	-	98	71.805	Mustela_putorius_furo
ENSPSIG00000002383	-	99	71.638	ENSMLUG00000008953	-	99	67.245	Myotis_lucifugus
ENSPSIG00000002383	-	99	70.097	ENSNGAG00000017537	Rad54b	99	65.662	Nannospalax_galili
ENSPSIG00000002383	-	96	61.635	ENSNBRG00000013394	rad54b	99	55.952	Neolamprologus_brichardi
ENSPSIG00000002383	-	98	74.037	ENSNLEG00000003062	-	99	74.038	Nomascus_leucogenys
ENSPSIG00000002383	-	79	71.429	ENSMEUG00000012426	-	71	71.429	Notamacropus_eugenii
ENSPSIG00000002383	-	98	72.727	ENSODEG00000019564	-	99	66.775	Octodon_degus
ENSPSIG00000002383	-	98	68.244	ENSODEG00000002650	-	95	73.077	Octodon_degus
ENSPSIG00000002383	-	99	59.831	ENSONIG00000006067	rad54b	99	57.019	Oreochromis_niloticus
ENSPSIG00000002383	-	91	75.266	ENSOANG00000011348	-	99	75.266	Ornithorhynchus_anatinus
ENSPSIG00000002383	-	98	71.623	ENSOCUG00000016478	-	99	66.956	Oryctolagus_cuniculus
ENSPSIG00000002383	-	96	61.887	ENSORLG00000008918	rad54b	99	63.833	Oryzias_latipes
ENSPSIG00000002383	-	78	63.679	ENSORLG00020012171	rad54b	99	63.679	Oryzias_latipes_hni
ENSPSIG00000002383	-	96	61.683	ENSORLG00015018536	rad54b	99	55.509	Oryzias_latipes_hsok
ENSPSIG00000002383	-	94	61.047	ENSOMEG00000004345	rad54b	99	61.047	Oryzias_melastigma
ENSPSIG00000002383	-	98	73.101	ENSOGAG00000007854	-	99	67.791	Otolemur_garnettii
ENSPSIG00000002383	-	98	71.960	ENSOARG00000007691	-	99	71.960	Ovis_aries
ENSPSIG00000002383	-	98	72.547	ENSPPAG00000029572	-	100	68.444	Pan_paniscus
ENSPSIG00000002383	-	97	72.682	ENSPPRG00000007571	-	99	72.727	Panthera_pardus
ENSPSIG00000002383	-	88	73.003	ENSPTIG00000012670	-	99	73.003	Panthera_tigris_altaica
ENSPSIG00000002383	-	98	73.913	ENSPTRG00000020427	-	100	73.901	Pan_troglodytes
ENSPSIG00000002383	-	99	73.039	ENSPANG00000019566	-	100	69.532	Papio_anubis
ENSPSIG00000002383	-	96	64.177	ENSPKIG00000014974	rad54b	99	59.115	Paramormyrops_kingsleyae
ENSPSIG00000002383	-	98	69.240	ENSPEMG00000012133	Rad54b	99	64.776	Peromyscus_maniculatus_bairdii
ENSPSIG00000002383	-	96	59.250	ENSPMAG00000002916	rad54b	99	59.250	Petromyzon_marinus
ENSPSIG00000002383	-	99	72.738	ENSPCIG00000020151	-	97	70.540	Phascolarctos_cinereus
ENSPSIG00000002383	-	95	63.338	ENSPFOG00000023411	rad54b	99	57.006	Poecilia_formosa
ENSPSIG00000002383	-	95	63.338	ENSPLAG00000010430	rad54b	99	57.052	Poecilia_latipinna
ENSPSIG00000002383	-	95	63.085	ENSPMEG00000016873	rad54b	99	57.524	Poecilia_mexicana
ENSPSIG00000002383	-	95	63.118	ENSPREG00000018443	rad54b	99	57.329	Poecilia_reticulata
ENSPSIG00000002383	-	98	73.913	ENSPPYG00000018750	-	100	69.532	Pongo_abelii
ENSPSIG00000002383	-	98	73.599	ENSPCOG00000026845	-	99	73.829	Propithecus_coquereli
ENSPSIG00000002383	-	90	72.275	ENSPVAG00000000261	-	86	72.275	Pteropus_vampyrus
ENSPSIG00000002383	-	95	61.343	ENSPNYG00000018303	rad54b	95	61.343	Pundamilia_nyererei
ENSPSIG00000002383	-	89	70.000	ENSPNAG00000000295	rad54b	96	70.000	Pygocentrus_nattereri
ENSPSIG00000002383	-	98	68.618	ENSRNOG00000039949	Rad54b	99	64.122	Rattus_norvegicus
ENSPSIG00000002383	-	98	73.144	ENSRBIG00000020419	-	100	68.988	Rhinopithecus_bieti
ENSPSIG00000002383	-	98	73.144	ENSRROG00000039897	-	100	68.988	Rhinopithecus_roxellana
ENSPSIG00000002383	-	95	36.456	YBR073W	RDH54	88	36.457	Saccharomyces_cerevisiae
ENSPSIG00000002383	-	97	73.250	ENSSBOG00000028501	-	100	68.444	Saimiri_boliviensis_boliviensis
ENSPSIG00000002383	-	98	75.155	ENSSHAG00000017038	-	100	70.076	Sarcophilus_harrisii
ENSPSIG00000002383	-	76	63.226	ENSSFOG00015008483	rad54b	96	63.226	Scleropages_formosus
ENSPSIG00000002383	-	95	61.461	ENSSMAG00000018659	rad54b	99	56.059	Scophthalmus_maximus
ENSPSIG00000002383	-	95	62.183	ENSSDUG00000001122	rad54b	98	56.582	Seriola_dumerili
ENSPSIG00000002383	-	95	62.343	ENSSLDG00000013787	rad54b	99	56.751	Seriola_lalandi_dorsalis
ENSPSIG00000002383	-	99	81.730	ENSSPUG00000016497	-	99	78.176	Sphenodon_punctatus
ENSPSIG00000002383	-	96	61.055	ENSSPAG00000012800	rad54b	99	55.927	Stegastes_partitus
ENSPSIG00000002383	-	98	71.553	ENSSSCG00000006101	-	99	72.055	Sus_scrofa
ENSPSIG00000002383	-	99	78.213	ENSTGUG00000011880	-	100	73.861	Taeniopygia_guttata
ENSPSIG00000002383	-	96	61.490	ENSTRUG00000010015	rad54b	99	55.544	Takifugu_rubripes
ENSPSIG00000002383	-	99	67.766	ENSTTRG00000006312	-	99	64.379	Tursiops_truncatus
ENSPSIG00000002383	-	97	72.898	ENSUMAG00000016401	-	99	67.612	Ursus_maritimus
ENSPSIG00000002383	-	98	72.727	ENSVPAG00000003157	-	99	67.101	Vicugna_pacos
ENSPSIG00000002383	-	97	61.166	ENSXETG00000025924	rad54b	99	61.166	Xenopus_tropicalis
ENSPSIG00000002383	-	95	61.995	ENSXMAG00000013141	rad54b	91	61.995	Xiphophorus_maculatus