EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000002970 (Gene tree)
Gene ID: 102454045
Gene Symbol: GAR1
Alias: -
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 18763 bases
Position: chrJH207669.1:3330967-3349729
Accession: 102454045
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000003081	Gar1	PF04410.14	7.4e-39	1	1
ENSPSIP00000003082	Gar1	PF04410.14	7.4e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000003094	GAR1-201	4164	XM_006119281	ENSPSIP00000003081	218 (aa)	XP_006119343	K7F4X2
ENSPSIT00000003095	GAR1-202	1906	XM_006119282	ENSPSIP00000003082	218 (aa)	XP_006119344	K7F4X2

Gene Model

Click here to download ENSPSIG00000002970's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000002970's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000002970	GAR1	50	89.908	ENSAMEG00000004605	GAR1	52	91.509	Ailuropoda_melanoleuca
ENSPSIG00000002970	GAR1	57	91.935	ENSAPLG00000010926	GAR1	67	90.984	Anas_platyrhynchos
ENSPSIG00000002970	GAR1	50	90.909	ENSACLG00000010029	gar1	65	80.690	Astatotilapia_calliptera
ENSPSIG00000002970	GAR1	50	86.364	ENSAMXG00000015752	gar1	56	80.620	Astyanax_mexicanus
ENSPSIG00000002970	GAR1	50	90.826	ENSBTAG00000000748	GAR1	50	92.453	Bos_taurus
ENSPSIG00000002970	GAR1	50	90.909	ENSCHIG00000016026	-	51	92.453	Capra_hircus
ENSPSIG00000002970	GAR1	50	82.569	ENSTSYG00000026632	-	54	83.962	Carlito_syrichta
ENSPSIG00000002970	GAR1	50	90.826	ENSTSYG00000013668	-	50	92.453	Carlito_syrichta
ENSPSIG00000002970	GAR1	50	90.909	ENSCATG00000021854	GAR1	54	92.453	Cercocebus_atys
ENSPSIG00000002970	GAR1	50	90.000	ENSCLAG00000005335	GAR1	69	94.545	Chinchilla_lanigera
ENSPSIG00000002970	GAR1	50	89.908	ENSDNOG00000037632	GAR1	54	91.509	Dasypus_novemcinctus
ENSPSIG00000002970	GAR1	62	83.824	ENSECAG00000013624	GAR1	54	92.453	Equus_caballus
ENSPSIG00000002970	GAR1	50	90.826	ENSFCAG00000040791	-	51	92.453	Felis_catus
ENSPSIG00000002970	GAR1	51	90.090	ENSFHEG00000008068	gar1	50	91.509	Fundulus_heteroclitus
ENSPSIG00000002970	GAR1	51	72.072	ENSGGOG00000036205	-	53	73.585	Gorilla_gorilla
ENSPSIG00000002970	GAR1	77	77.976	ENSHGLG00000000493	GAR1	72	96.364	Heterocephalus_glaber_female
ENSPSIG00000002970	GAR1	50	90.000	ENSIPUG00000003194	gar1	56	89.831	Ictalurus_punctatus
ENSPSIG00000002970	GAR1	50	88.991	ENSSTOG00000005577	GAR1	71	94.545	Ictidomys_tridecemlineatus
ENSPSIG00000002970	GAR1	51	88.288	ENSKMAG00000010402	gar1	75	80.380	Kryptolebias_marmoratus
ENSPSIG00000002970	GAR1	78	79.851	ENSLACG00000003306	GAR1	64	90.654	Latimeria_chalumnae
ENSPSIG00000002970	GAR1	72	71.154	ENSLOCG00000011711	GAR1	76	82.639	Lepisosteus_oculatus
ENSPSIG00000002970	GAR1	50	90.909	ENSMZEG00005001281	gar1	65	80.690	Maylandia_zebra
ENSPSIG00000002970	GAR1	62	78.519	ENSMMOG00000004156	gar1	52	91.509	Mola_mola
ENSPSIG00000002970	GAR1	50	88.889	ENSMODG00000005897	GAR1	66	70.886	Monodelphis_domestica
ENSPSIG00000002970	GAR1	50	90.909	ENSMUSG00000028010	Gar1	70	96.364	Mus_musculus
ENSPSIG00000002970	GAR1	50	90.909	MGP_PahariEiJ_G0027076	Gar1	70	96.364	Mus_pahari
ENSPSIG00000002970	GAR1	50	90.909	MGP_SPRETEiJ_G0026580	Gar1	70	96.364	Mus_spretus
ENSPSIG00000002970	GAR1	50	90.826	ENSMPUG00000008615	GAR1	51	92.453	Mustela_putorius_furo
ENSPSIG00000002970	GAR1	50	90.909	ENSNGAG00000008268	Gar1	71	94.545	Nannospalax_galili
ENSPSIG00000002970	GAR1	63	70.073	ENSNLEG00000034282	-	54	76.415	Nomascus_leucogenys
ENSPSIG00000002970	GAR1	50	90.826	ENSOGAG00000004693	GAR1	50	92.453	Otolemur_garnettii
ENSPSIG00000002970	GAR1	50	90.826	ENSOARG00000004910	GAR1	50	92.453	Ovis_aries
ENSPSIG00000002970	GAR1	50	90.826	ENSPPAG00000014081	GAR1	53	92.453	Pan_paniscus
ENSPSIG00000002970	GAR1	50	90.826	ENSPPRG00000023697	GAR1	51	92.453	Panthera_pardus
ENSPSIG00000002970	GAR1	50	90.826	ENSPTIG00000021565	GAR1	51	92.453	Panthera_tigris_altaica
ENSPSIG00000002970	GAR1	77	58.929	ENSPTRG00000049340	-	50	75.472	Pan_troglodytes
ENSPSIG00000002970	GAR1	50	90.909	ENSPTRG00000016364	GAR1	54	92.453	Pan_troglodytes
ENSPSIG00000002970	GAR1	50	88.889	ENSPCIG00000018912	GAR1	66	71.975	Phascolarctos_cinereus
ENSPSIG00000002970	GAR1	50	90.909	ENSPNYG00000020926	gar1	51	86.992	Pundamilia_nyererei
ENSPSIG00000002970	GAR1	63	72.464	ENSRBIG00000042411	-	51	75.472	Rhinopithecus_bieti
ENSPSIG00000002970	GAR1	51	75.000	ENSRROG00000044348	-	51	75.472	Rhinopithecus_roxellana
ENSPSIG00000002970	GAR1	50	90.909	ENSRROG00000028454	GAR1	54	92.453	Rhinopithecus_roxellana
ENSPSIG00000002970	GAR1	67	78.082	ENSSDUG00000002130	gar1	66	77.358	Seriola_dumerili
ENSPSIG00000002970	GAR1	50	90.909	ENSSSCG00000009137	GAR1	52	92.453	Sus_scrofa
ENSPSIG00000002970	GAR1	56	85.124	ENSTNIG00000013023	gar1	60	92.453	Tetraodon_nigroviridis
ENSPSIG00000002970	GAR1	50	90.826	ENSUMAG00000000776	GAR1	51	92.453	Ursus_maritimus
ENSPSIG00000002970	GAR1	50	90.826	ENSVVUG00000017612	GAR1	55	92.453	Vulpes_vulpes