EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000004305 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 14567 bases
Position: chrJH210059.1:273438-288004
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000004588	HVSL	PF09749.9	2.6e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000004613	USB1-201	663	-	ENSPSIP00000004588	221 (aa)	-	K7F978

Gene Model

Click here to download ENSPSIG00000004305's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000004305's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000004305	USB1	100	53.097	ENSG00000103005	USB1	100	51.389	Homo_sapiens
ENSPSIG00000004305	USB1	100	45.575	ENSAPOG00000011942	usb1	80	45.575	Acanthochromis_polyacanthus
ENSPSIG00000004305	USB1	100	53.333	ENSAMEG00000017205	USB1	83	53.333	Ailuropoda_melanoleuca
ENSPSIG00000004305	USB1	100	45.778	ENSACIG00000012234	usb1	82	45.778	Amphilophus_citrinellus
ENSPSIG00000004305	USB1	100	46.903	ENSAOCG00000014831	usb1	79	46.903	Amphiprion_ocellaris
ENSPSIG00000004305	USB1	100	46.903	ENSAPEG00000000296	usb1	79	46.903	Amphiprion_percula
ENSPSIG00000004305	USB1	100	46.053	ENSATEG00000009348	usb1	79	46.053	Anabas_testudineus
ENSPSIG00000004305	USB1	100	63.203	ENSAPLG00000002756	USB1	100	63.203	Anas_platyrhynchos
ENSPSIG00000004305	USB1	100	53.017	ENSACAG00000015481	USB1	99	53.017	Anolis_carolinensis
ENSPSIG00000004305	USB1	100	53.540	ENSANAG00000035640	USB1	85	53.540	Aotus_nancymaae
ENSPSIG00000004305	USB1	100	43.946	ENSACLG00000020586	usb1	79	43.946	Astatotilapia_calliptera
ENSPSIG00000004305	USB1	99	44.643	ENSAMXG00000040146	usb1	74	44.643	Astyanax_mexicanus
ENSPSIG00000004305	USB1	100	53.509	ENSBTAG00000015758	USB1	85	53.509	Bos_taurus
ENSPSIG00000004305	USB1	100	54.709	ENSCJAG00000011733	USB1	85	53.982	Callithrix_jacchus
ENSPSIG00000004305	USB1	99	53.304	ENSCAFG00000008556	USB1	60	53.304	Canis_familiaris
ENSPSIG00000004305	USB1	99	53.571	ENSCAFG00020009263	USB1	84	53.571	Canis_lupus_dingo
ENSPSIG00000004305	USB1	100	53.812	ENSCHIG00000024290	USB1	84	53.812	Capra_hircus
ENSPSIG00000004305	USB1	100	51.570	ENSTSYG00000006997	USB1	85	51.556	Carlito_syrichta
ENSPSIG00000004305	USB1	100	43.243	ENSCAPG00000009057	USB1	96	43.243	Cavia_aperea
ENSPSIG00000004305	USB1	100	52.889	ENSCPOG00000014325	USB1	83	52.889	Cavia_porcellus
ENSPSIG00000004305	USB1	100	53.097	ENSCCAG00000022132	USB1	85	53.097	Cebus_capucinus
ENSPSIG00000004305	USB1	100	54.425	ENSCATG00000032174	USB1	85	54.425	Cercocebus_atys
ENSPSIG00000004305	USB1	75	50.000	ENSCLAG00000007363	USB1	96	50.000	Chinchilla_lanigera
ENSPSIG00000004305	USB1	100	54.425	ENSCSAG00000004783	USB1	85	54.425	Chlorocebus_sabaeus
ENSPSIG00000004305	USB1	100	72.889	ENSCPBG00000026943	USB1	81	72.889	Chrysemys_picta_bellii
ENSPSIG00000004305	USB1	100	54.867	ENSCANG00000037135	USB1	85	54.867	Colobus_angolensis_palliatus
ENSPSIG00000004305	USB1	100	49.580	ENSCGRG00001011243	USB1	84	49.580	Cricetulus_griseus_chok1gshd
ENSPSIG00000004305	USB1	100	49.580	ENSCGRG00000013252	USB1	84	49.580	Cricetulus_griseus_crigri
ENSPSIG00000004305	USB1	100	45.575	ENSCSEG00000013881	usb1	81	45.575	Cynoglossus_semilaevis
ENSPSIG00000004305	USB1	100	41.975	ENSCVAG00000009252	usb1	97	41.975	Cyprinodon_variegatus
ENSPSIG00000004305	USB1	100	40.506	ENSDARG00000003841	usb1	81	40.506	Danio_rerio
ENSPSIG00000004305	USB1	100	50.442	ENSDORG00000001888	Usb1	85	50.442	Dipodomys_ordii
ENSPSIG00000004305	USB1	100	48.052	ENSETEG00000019682	USB1	84	48.052	Echinops_telfairi
ENSPSIG00000004305	USB1	99	39.648	ENSEBUG00000005889	usb1	78	39.648	Eptatretus_burgeri
ENSPSIG00000004305	USB1	100	53.778	ENSEASG00005005484	USB1	85	53.778	Equus_asinus_asinus
ENSPSIG00000004305	USB1	100	54.425	ENSECAG00000019493	USB1	77	54.425	Equus_caballus
ENSPSIG00000004305	USB1	78	47.458	ENSEEUG00000000154	USB1	66	47.458	Erinaceus_europaeus
ENSPSIG00000004305	USB1	100	41.079	ENSELUG00000010974	usb1	82	41.079	Esox_lucius
ENSPSIG00000004305	USB1	100	52.018	ENSFCAG00000002693	USB1	84	51.515	Felis_catus
ENSPSIG00000004305	USB1	100	53.333	ENSFALG00000006876	USB1	84	53.333	Ficedula_albicollis
ENSPSIG00000004305	USB1	100	51.556	ENSFDAG00000010052	USB1	84	51.556	Fukomys_damarensis
ENSPSIG00000004305	USB1	72	50.602	ENSFHEG00000012334	usb1	70	46.597	Fundulus_heteroclitus
ENSPSIG00000004305	USB1	99	44.196	ENSGMOG00000004228	usb1	99	44.196	Gadus_morhua
ENSPSIG00000004305	USB1	99	59.735	ENSGALG00000035604	USB1	88	59.912	Gallus_gallus
ENSPSIG00000004305	USB1	100	45.374	ENSGAFG00000021890	usb1	82	44.681	Gambusia_affinis
ENSPSIG00000004305	USB1	100	42.982	ENSGACG00000003257	usb1	81	42.982	Gasterosteus_aculeatus
ENSPSIG00000004305	USB1	100	67.932	ENSGAGG00000022572	USB1	82	68.067	Gopherus_agassizii
ENSPSIG00000004305	USB1	100	53.097	ENSGGOG00000017147	USB1	85	53.097	Gorilla_gorilla
ENSPSIG00000004305	USB1	100	44.395	ENSHBUG00000009823	usb1	80	44.395	Haplochromis_burtoni
ENSPSIG00000004305	USB1	100	52.212	ENSHGLG00000016078	USB1	82	52.212	Heterocephalus_glaber_female
ENSPSIG00000004305	USB1	100	52.212	ENSHGLG00100005562	USB1	82	52.212	Heterocephalus_glaber_male
ENSPSIG00000004305	USB1	96	41.743	ENSHCOG00000015633	usb1	86	42.222	Hippocampus_comes
ENSPSIG00000004305	USB1	100	43.697	ENSIPUG00000008601	usb1	78	43.697	Ictalurus_punctatus
ENSPSIG00000004305	USB1	100	51.477	ENSSTOG00000007548	USB1	82	51.477	Ictidomys_tridecemlineatus
ENSPSIG00000004305	USB1	100	52.000	ENSJJAG00000021859	Usb1	84	52.000	Jaculus_jaculus
ENSPSIG00000004305	USB1	100	42.678	ENSKMAG00000007200	usb1	79	42.678	Kryptolebias_marmoratus
ENSPSIG00000004305	USB1	90	41.284	ENSLBEG00000008452	usb1	65	41.284	Labrus_bergylta
ENSPSIG00000004305	USB1	72	60.241	ENSLACG00000000105	USB1	59	58.960	Latimeria_chalumnae
ENSPSIG00000004305	USB1	100	45.148	ENSLOCG00000000465	usb1	79	45.148	Lepisosteus_oculatus
ENSPSIG00000004305	USB1	100	42.373	ENSLAFG00000002267	USB1	83	42.373	Loxodonta_africana
ENSPSIG00000004305	USB1	100	54.425	ENSMFAG00000003926	USB1	85	54.425	Macaca_fascicularis
ENSPSIG00000004305	USB1	100	54.425	ENSMMUG00000022669	USB1	85	54.425	Macaca_mulatta
ENSPSIG00000004305	USB1	100	54.425	ENSMNEG00000042487	USB1	85	54.425	Macaca_nemestrina
ENSPSIG00000004305	USB1	100	54.425	ENSMLEG00000028756	USB1	85	54.425	Mandrillus_leucophaeus
ENSPSIG00000004305	USB1	100	46.222	ENSMAMG00000015092	usb1	80	46.222	Mastacembelus_armatus
ENSPSIG00000004305	USB1	100	43.946	ENSMZEG00005010008	usb1	80	43.946	Maylandia_zebra
ENSPSIG00000004305	USB1	100	50.222	ENSMAUG00000007832	Usb1	84	50.222	Mesocricetus_auratus
ENSPSIG00000004305	USB1	100	52.915	ENSMICG00000004900	USB1	85	52.444	Microcebus_murinus
ENSPSIG00000004305	USB1	100	52.212	ENSMOCG00000022647	Usb1	84	52.212	Microtus_ochrogaster
ENSPSIG00000004305	USB1	100	44.737	ENSMMOG00000000490	usb1	87	44.737	Mola_mola
ENSPSIG00000004305	USB1	97	53.425	ENSMODG00000014067	USB1	84	53.778	Monodelphis_domestica
ENSPSIG00000004305	USB1	100	46.930	ENSMALG00000005930	usb1	79	46.930	Monopterus_albus
ENSPSIG00000004305	USB1	100	50.222	MGP_CAROLIEiJ_G0031421	Usb1	88	52.525	Mus_caroli
ENSPSIG00000004305	USB1	100	50.222	ENSMUSG00000031792	Usb1	88	52.525	Mus_musculus
ENSPSIG00000004305	USB1	100	50.222	MGP_PahariEiJ_G0023019	Usb1	85	52.525	Mus_pahari
ENSPSIG00000004305	USB1	100	49.778	MGP_SPRETEiJ_G0032540	Usb1	84	49.778	Mus_spretus
ENSPSIG00000004305	USB1	100	50.211	ENSMPUG00000004684	USB1	80	50.211	Mustela_putorius_furo
ENSPSIG00000004305	USB1	100	52.889	ENSMLUG00000007400	USB1	97	52.889	Myotis_lucifugus
ENSPSIG00000004305	USB1	100	51.111	ENSNGAG00000009703	Usb1	83	51.111	Nannospalax_galili
ENSPSIG00000004305	USB1	100	44.595	ENSNBRG00000008747	usb1	99	42.925	Neolamprologus_brichardi
ENSPSIG00000004305	USB1	93	52.133	ENSNLEG00000003340	USB1	84	52.133	Nomascus_leucogenys
ENSPSIG00000004305	USB1	100	52.889	ENSODEG00000016214	USB1	84	52.889	Octodon_degus
ENSPSIG00000004305	USB1	100	45.291	ENSONIG00000011063	usb1	80	45.291	Oreochromis_niloticus
ENSPSIG00000004305	USB1	100	54.622	ENSOANG00000012118	USB1	94	54.622	Ornithorhynchus_anatinus
ENSPSIG00000004305	USB1	100	43.096	ENSORLG00000012479	usb1	82	43.096	Oryzias_latipes
ENSPSIG00000004305	USB1	100	43.096	ENSORLG00020018671	usb1	82	43.096	Oryzias_latipes_hni
ENSPSIG00000004305	USB1	100	43.096	ENSORLG00015009679	usb1	83	43.096	Oryzias_latipes_hsok
ENSPSIG00000004305	USB1	100	42.259	ENSOMEG00000012930	usb1	81	42.259	Oryzias_melastigma
ENSPSIG00000004305	USB1	100	52.915	ENSOGAG00000003273	USB1	83	52.915	Otolemur_garnettii
ENSPSIG00000004305	USB1	100	53.070	ENSOARG00000001107	USB1	86	53.070	Ovis_aries
ENSPSIG00000004305	USB1	100	53.097	ENSPPAG00000042137	USB1	85	53.097	Pan_paniscus
ENSPSIG00000004305	USB1	100	51.570	ENSPPRG00000024797	USB1	84	51.082	Panthera_pardus
ENSPSIG00000004305	USB1	100	51.570	ENSPTIG00000007506	USB1	84	51.082	Panthera_tigris_altaica
ENSPSIG00000004305	USB1	100	52.915	ENSPTRG00000008172	USB1	100	51.852	Pan_troglodytes
ENSPSIG00000004305	USB1	100	54.425	ENSPANG00000025138	USB1	85	54.425	Papio_anubis
ENSPSIG00000004305	USB1	99	46.667	ENSPKIG00000015109	usb1	75	46.667	Paramormyrops_kingsleyae
ENSPSIG00000004305	USB1	99	43.111	ENSPMGG00000017725	usb1	85	43.111	Periophthalmus_magnuspinnatus
ENSPSIG00000004305	USB1	100	48.739	ENSPEMG00000016183	Usb1	82	48.739	Peromyscus_maniculatus_bairdii
ENSPSIG00000004305	USB1	100	40.586	ENSPMAG00000000462	usb1	95	40.586	Petromyzon_marinus
ENSPSIG00000004305	USB1	100	45.815	ENSPFOG00000011130	usb1	81	45.815	Poecilia_formosa
ENSPSIG00000004305	USB1	100	45.374	ENSPLAG00000009820	usb1	81	45.374	Poecilia_latipinna
ENSPSIG00000004305	USB1	100	45.815	ENSPMEG00000006402	usb1	81	45.815	Poecilia_mexicana
ENSPSIG00000004305	USB1	72	51.807	ENSPREG00000001047	usb1	78	46.626	Poecilia_reticulata
ENSPSIG00000004305	USB1	94	49.765	ENSPPYG00000007401	USB1	84	49.765	Pongo_abelii
ENSPSIG00000004305	USB1	100	52.915	ENSPCOG00000022612	USB1	85	52.889	Propithecus_coquereli
ENSPSIG00000004305	USB1	100	48.945	ENSPVAG00000004613	USB1	86	48.945	Pteropus_vampyrus
ENSPSIG00000004305	USB1	100	44.395	ENSPNYG00000022262	usb1	80	44.395	Pundamilia_nyererei
ENSPSIG00000004305	USB1	100	42.553	ENSPNAG00000011736	usb1	76	42.553	Pygocentrus_nattereri
ENSPSIG00000004305	USB1	100	47.679	ENSRNOG00000013216	Usb1	84	47.679	Rattus_norvegicus
ENSPSIG00000004305	USB1	100	53.812	ENSRBIG00000044466	USB1	100	52.778	Rhinopithecus_bieti
ENSPSIG00000004305	USB1	100	54.425	ENSRROG00000029211	USB1	85	54.425	Rhinopithecus_roxellana
ENSPSIG00000004305	USB1	100	53.982	ENSSBOG00000029362	USB1	85	53.982	Saimiri_boliviensis_boliviensis
ENSPSIG00000004305	USB1	98	50.000	ENSSHAG00000006993	USB1	89	50.840	Sarcophilus_harrisii
ENSPSIG00000004305	USB1	99	42.918	ENSSFOG00015023663	usb1	70	42.918	Scleropages_formosus
ENSPSIG00000004305	USB1	100	44.770	ENSSMAG00000015834	usb1	80	44.770	Scophthalmus_maximus
ENSPSIG00000004305	USB1	100	47.807	ENSSDUG00000002949	usb1	83	47.807	Seriola_dumerili
ENSPSIG00000004305	USB1	100	47.807	ENSSLDG00000014174	usb1	80	47.807	Seriola_lalandi_dorsalis
ENSPSIG00000004305	USB1	95	58.411	ENSSPUG00000006741	USB1	100	55.507	Sphenodon_punctatus
ENSPSIG00000004305	USB1	100	47.788	ENSSPAG00000007484	usb1	79	47.788	Stegastes_partitus
ENSPSIG00000004305	USB1	100	53.947	ENSSSCG00000002807	USB1	83	53.947	Sus_scrofa
ENSPSIG00000004305	USB1	93	55.556	ENSTGUG00000004792	USB1	87	54.202	Taeniopygia_guttata
ENSPSIG00000004305	USB1	100	42.105	ENSTRUG00000021069	usb1	83	42.105	Takifugu_rubripes
ENSPSIG00000004305	USB1	100	39.912	ENSTNIG00000000626	usb1	83	39.912	Tetraodon_nigroviridis
ENSPSIG00000004305	USB1	100	34.043	ENSTBEG00000001507	USB1	97	34.043	Tupaia_belangeri
ENSPSIG00000004305	USB1	100	53.778	ENSUAMG00000016823	USB1	83	53.778	Ursus_americanus
ENSPSIG00000004305	USB1	95	52.093	ENSUMAG00000021369	USB1	100	52.093	Ursus_maritimus
ENSPSIG00000004305	USB1	99	53.571	ENSVVUG00000023700	USB1	86	53.571	Vulpes_vulpes
ENSPSIG00000004305	USB1	97	47.032	ENSXETG00000013795	usb1	89	47.321	Xenopus_tropicalis
ENSPSIG00000004305	USB1	100	45.982	ENSXMAG00000024687	usb1	66	45.982	Xiphophorus_maculatus