EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000004458 (Gene tree)
Gene ID: -
Gene Symbol: LSM2
Alias: -
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 2243 bases
Position: chrJH209359.1:55906-58148
Accession: 102451592
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000004762	LSM	PF01423.22	8.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000004789	LSM2-201	1179	XM_006125556	ENSPSIP00000004762	120 (aa)	XP_025041667	K7F9Q2

Gene Model

Click here to download ENSPSIG00000004458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000004458's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000004458	LSM2	62	34.211	ENSPSIG00000012358	LSM4	70	30.303
ENSPSIG00000004458	LSM2	61	31.507	ENSPSIG00000000590	LSM10	57	31.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000004458	LSM2	78	100.000	ENSG00000204392	LSM2	99	100.000	Homo_sapiens
ENSPSIG00000004458	LSM2	80	97.917	ENSAPOG00000017967	si:ch73-14h10.2	99	98.936	Acanthochromis_polyacanthus
ENSPSIG00000004458	LSM2	78	100.000	ENSAMEG00000006483	LSM2	100	100.000	Ailuropoda_melanoleuca
ENSPSIG00000004458	LSM2	88	92.453	ENSACIG00000007795	si:ch73-14h10.2	68	92.453	Amphilophus_citrinellus
ENSPSIG00000004458	LSM2	80	97.917	ENSAOCG00000006949	si:ch73-14h10.2	79	97.917	Amphiprion_ocellaris
ENSPSIG00000004458	LSM2	80	97.917	ENSAPEG00000020375	si:ch73-14h10.2	89	97.917	Amphiprion_percula
ENSPSIG00000004458	LSM2	78	98.936	ENSATEG00000011376	si:ch73-14h10.2	99	98.936	Anabas_testudineus
ENSPSIG00000004458	LSM2	83	96.000	ENSACAG00000017281	LSM2	96	96.000	Anolis_carolinensis
ENSPSIG00000004458	LSM2	78	100.000	ENSANAG00000028372	LSM2	99	100.000	Aotus_nancymaae
ENSPSIG00000004458	LSM2	76	81.319	ENSANAG00000028033	-	95	82.222	Aotus_nancymaae
ENSPSIG00000004458	LSM2	78	98.936	ENSACLG00000024717	smx5	99	98.936	Astatotilapia_calliptera
ENSPSIG00000004458	LSM2	78	98.936	ENSAMXG00000036868	si:ch73-14h10.2	99	98.936	Astyanax_mexicanus
ENSPSIG00000004458	LSM2	78	100.000	ENSBTAG00000005634	LSM2	99	100.000	Bos_taurus
ENSPSIG00000004458	LSM2	78	83.871	WBGene00001808	gut-2	96	83.871	Caenorhabditis_elegans
ENSPSIG00000004458	LSM2	78	100.000	ENSCJAG00000040899	LSM2	99	100.000	Callithrix_jacchus
ENSPSIG00000004458	LSM2	59	98.592	ENSCAFG00020016978	-	88	98.592	Canis_lupus_dingo
ENSPSIG00000004458	LSM2	78	100.000	ENSCHIG00000016153	LSM2	100	100.000	Capra_hircus
ENSPSIG00000004458	LSM2	78	89.247	ENSTSYG00000030015	-	99	89.247	Carlito_syrichta
ENSPSIG00000004458	LSM2	78	100.000	ENSTSYG00000034844	LSM2	99	100.000	Carlito_syrichta
ENSPSIG00000004458	LSM2	60	100.000	ENSCAPG00000009970	LSM2	92	100.000	Cavia_aperea
ENSPSIG00000004458	LSM2	78	100.000	ENSCPOG00000021053	LSM2	99	100.000	Cavia_porcellus
ENSPSIG00000004458	LSM2	78	100.000	ENSCCAG00000024276	LSM2	99	100.000	Cebus_capucinus
ENSPSIG00000004458	LSM2	78	100.000	ENSCATG00000013737	LSM2	99	100.000	Cercocebus_atys
ENSPSIG00000004458	LSM2	78	100.000	ENSCLAG00000008081	LSM2	99	100.000	Chinchilla_lanigera
ENSPSIG00000004458	LSM2	78	100.000	ENSCSAG00000008800	LSM2	99	100.000	Chlorocebus_sabaeus
ENSPSIG00000004458	LSM2	78	100.000	ENSCHOG00000007702	LSM2	99	100.000	Choloepus_hoffmanni
ENSPSIG00000004458	LSM2	78	95.745	ENSCING00000022677	-	99	95.745	Ciona_intestinalis
ENSPSIG00000004458	LSM2	78	100.000	ENSCANG00000039576	LSM2	99	100.000	Colobus_angolensis_palliatus
ENSPSIG00000004458	LSM2	92	89.091	ENSCGRG00001013932	Lsm2	99	100.000	Cricetulus_griseus_chok1gshd
ENSPSIG00000004458	LSM2	60	100.000	ENSCGRG00000013311	Lsm2	62	100.000	Cricetulus_griseus_crigri
ENSPSIG00000004458	LSM2	78	98.936	ENSCSEG00000002911	si:ch73-14h10.2	99	98.936	Cynoglossus_semilaevis
ENSPSIG00000004458	LSM2	80	97.917	ENSCVAG00000015394	si:ch73-14h10.2	91	97.917	Cyprinodon_variegatus
ENSPSIG00000004458	LSM2	78	98.936	ENSDARG00000070867	smx5	99	98.936	Danio_rerio
ENSPSIG00000004458	LSM2	78	100.000	ENSDNOG00000002633	LSM2	100	100.000	Dasypus_novemcinctus
ENSPSIG00000004458	LSM2	78	100.000	ENSDORG00000026571	Lsm2	99	100.000	Dipodomys_ordii
ENSPSIG00000004458	LSM2	75	95.556	FBgn0036277	CG10418	95	95.556	Drosophila_melanogaster
ENSPSIG00000004458	LSM2	78	100.000	ENSEASG00005015670	LSM2	79	100.000	Equus_asinus_asinus
ENSPSIG00000004458	LSM2	78	100.000	ENSECAG00000018791	LSM2	79	100.000	Equus_caballus
ENSPSIG00000004458	LSM2	78	100.000	ENSELUG00000008241	smx5	99	100.000	Esox_lucius
ENSPSIG00000004458	LSM2	78	100.000	ENSFCAG00000045887	LSM2	99	100.000	Felis_catus
ENSPSIG00000004458	LSM2	78	100.000	ENSFDAG00000000390	LSM2	99	100.000	Fukomys_damarensis
ENSPSIG00000004458	LSM2	78	95.833	ENSFHEG00000009619	si:ch73-14h10.2	100	95.833	Fundulus_heteroclitus
ENSPSIG00000004458	LSM2	78	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
ENSPSIG00000004458	LSM2	78	98.936	ENSGAFG00000017286	si:ch73-14h10.2	99	98.936	Gambusia_affinis
ENSPSIG00000004458	LSM2	78	98.936	ENSGACG00000003827	si:ch73-14h10.2	99	98.936	Gasterosteus_aculeatus
ENSPSIG00000004458	LSM2	78	100.000	ENSGAGG00000012458	LSM2	99	100.000	Gopherus_agassizii
ENSPSIG00000004458	LSM2	78	100.000	ENSGGOG00000011383	LSM2	99	100.000	Gorilla_gorilla
ENSPSIG00000004458	LSM2	78	100.000	ENSHGLG00000011299	LSM2	99	100.000	Heterocephalus_glaber_female
ENSPSIG00000004458	LSM2	78	100.000	ENSHGLG00100017194	LSM2	99	100.000	Heterocephalus_glaber_male
ENSPSIG00000004458	LSM2	78	98.936	ENSHCOG00000014057	si:ch73-14h10.2	99	98.936	Hippocampus_comes
ENSPSIG00000004458	LSM2	78	98.936	ENSIPUG00000010539	lsm2	99	98.936	Ictalurus_punctatus
ENSPSIG00000004458	LSM2	78	100.000	ENSSTOG00000013144	LSM2	99	100.000	Ictidomys_tridecemlineatus
ENSPSIG00000004458	LSM2	74	77.528	ENSJJAG00000019477	-	100	77.528	Jaculus_jaculus
ENSPSIG00000004458	LSM2	78	98.936	ENSKMAG00000014909	si:ch73-14h10.2	99	98.936	Kryptolebias_marmoratus
ENSPSIG00000004458	LSM2	80	96.875	ENSLBEG00000025781	si:ch73-14h10.2	100	96.875	Labrus_bergylta
ENSPSIG00000004458	LSM2	78	98.936	ENSLACG00000015064	LSM2	99	98.936	Latimeria_chalumnae
ENSPSIG00000004458	LSM2	78	98.936	ENSLOCG00000005228	si:ch73-14h10.2	99	98.936	Lepisosteus_oculatus
ENSPSIG00000004458	LSM2	78	100.000	ENSLAFG00000016139	LSM2	100	100.000	Loxodonta_africana
ENSPSIG00000004458	LSM2	78	100.000	ENSMFAG00000001016	LSM2	99	100.000	Macaca_fascicularis
ENSPSIG00000004458	LSM2	78	81.915	ENSMMUG00000045473	-	97	81.915	Macaca_mulatta
ENSPSIG00000004458	LSM2	78	100.000	ENSMMUG00000006832	LSM2	99	100.000	Macaca_mulatta
ENSPSIG00000004458	LSM2	63	85.333	ENSMNEG00000040973	-	91	85.333	Macaca_nemestrina
ENSPSIG00000004458	LSM2	78	100.000	ENSMNEG00000045355	LSM2	99	100.000	Macaca_nemestrina
ENSPSIG00000004458	LSM2	78	100.000	ENSMLEG00000037369	-	99	100.000	Mandrillus_leucophaeus
ENSPSIG00000004458	LSM2	78	80.851	ENSMLEG00000031181	-	97	80.851	Mandrillus_leucophaeus
ENSPSIG00000004458	LSM2	89	89.720	ENSMAMG00000010053	si:ch73-14h10.2	72	98.936	Mastacembelus_armatus
ENSPSIG00000004458	LSM2	78	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
ENSPSIG00000004458	LSM2	78	100.000	ENSMAUG00000021966	Lsm2	99	100.000	Mesocricetus_auratus
ENSPSIG00000004458	LSM2	60	79.167	ENSMICG00000046764	-	92	79.167	Microcebus_murinus
ENSPSIG00000004458	LSM2	78	100.000	ENSMOCG00000015306	Lsm2	99	100.000	Microtus_ochrogaster
ENSPSIG00000004458	LSM2	78	97.872	ENSMMOG00000005603	si:ch73-14h10.2	100	97.872	Mola_mola
ENSPSIG00000004458	LSM2	79	98.947	ENSMODG00000015177	LSM2	100	98.947	Monodelphis_domestica
ENSPSIG00000004458	LSM2	78	98.936	ENSMALG00000016490	si:ch73-14h10.2	99	98.936	Monopterus_albus
ENSPSIG00000004458	LSM2	78	100.000	MGP_CAROLIEiJ_G0021490	Lsm2	99	100.000	Mus_caroli
ENSPSIG00000004458	LSM2	78	100.000	ENSMUSG00000007050	Lsm2	99	100.000	Mus_musculus
ENSPSIG00000004458	LSM2	78	100.000	MGP_PahariEiJ_G0020485	Lsm2	99	100.000	Mus_pahari
ENSPSIG00000004458	LSM2	78	100.000	MGP_SPRETEiJ_G0022395	Lsm2	99	100.000	Mus_spretus
ENSPSIG00000004458	LSM2	78	100.000	ENSNGAG00000003997	Lsm2	99	100.000	Nannospalax_galili
ENSPSIG00000004458	LSM2	78	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
ENSPSIG00000004458	LSM2	78	100.000	ENSNLEG00000035542	LSM2	99	100.000	Nomascus_leucogenys
ENSPSIG00000004458	LSM2	59	98.592	ENSMEUG00000003419	LSM2	100	98.592	Notamacropus_eugenii
ENSPSIG00000004458	LSM2	78	100.000	ENSOPRG00000003668	LSM2	99	100.000	Ochotona_princeps
ENSPSIG00000004458	LSM2	78	100.000	ENSODEG00000017583	LSM2	99	100.000	Octodon_degus
ENSPSIG00000004458	LSM2	78	98.936	ENSONIG00000019321	si:ch73-14h10.2	99	98.936	Oreochromis_niloticus
ENSPSIG00000004458	LSM2	78	100.000	ENSOANG00000005398	LSM2	100	100.000	Ornithorhynchus_anatinus
ENSPSIG00000004458	LSM2	78	100.000	ENSOCUG00000002583	LSM2	99	100.000	Oryctolagus_cuniculus
ENSPSIG00000004458	LSM2	78	98.936	ENSORLG00000029858	si:ch73-14h10.2	99	98.936	Oryzias_latipes
ENSPSIG00000004458	LSM2	78	75.610	ENSORLG00015000465	si:ch73-14h10.2	99	75.610	Oryzias_latipes_hsok
ENSPSIG00000004458	LSM2	78	98.936	ENSOMEG00000002892	si:ch73-14h10.2	99	98.936	Oryzias_melastigma
ENSPSIG00000004458	LSM2	78	100.000	ENSOARG00000004575	LSM2	100	100.000	Ovis_aries
ENSPSIG00000004458	LSM2	78	100.000	ENSPPAG00000032431	LSM2	99	100.000	Pan_paniscus
ENSPSIG00000004458	LSM2	63	86.667	ENSPPAG00000043941	-	93	86.667	Pan_paniscus
ENSPSIG00000004458	LSM2	78	100.000	ENSPPRG00000015353	LSM2	99	100.000	Panthera_pardus
ENSPSIG00000004458	LSM2	78	100.000	ENSPTIG00000010303	LSM2	99	100.000	Panthera_tigris_altaica
ENSPSIG00000004458	LSM2	78	100.000	ENSPTRG00000017986	LSM2	99	100.000	Pan_troglodytes
ENSPSIG00000004458	LSM2	78	100.000	ENSPANG00000024577	LSM2	99	100.000	Papio_anubis
ENSPSIG00000004458	LSM2	78	98.936	ENSPKIG00000007028	si:ch73-14h10.2	99	98.936	Paramormyrops_kingsleyae
ENSPSIG00000004458	LSM2	78	96.809	ENSPMGG00000018511	si:ch73-14h10.2	100	96.809	Periophthalmus_magnuspinnatus
ENSPSIG00000004458	LSM2	78	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
ENSPSIG00000004458	LSM2	78	98.936	ENSPFOG00000001621	si:ch73-14h10.2	99	98.936	Poecilia_formosa
ENSPSIG00000004458	LSM2	78	98.936	ENSPLAG00000017165	si:ch73-14h10.2	99	98.936	Poecilia_latipinna
ENSPSIG00000004458	LSM2	78	98.936	ENSPMEG00000019574	si:ch73-14h10.2	99	98.936	Poecilia_mexicana
ENSPSIG00000004458	LSM2	78	97.872	ENSPREG00000016534	si:ch73-14h10.2	100	97.872	Poecilia_reticulata
ENSPSIG00000004458	LSM2	82	96.939	ENSPPYG00000016461	-	56	96.939	Pongo_abelii
ENSPSIG00000004458	LSM2	78	100.000	ENSPCAG00000013737	LSM2	99	100.000	Procavia_capensis
ENSPSIG00000004458	LSM2	78	100.000	ENSPCOG00000020134	LSM2	99	100.000	Propithecus_coquereli
ENSPSIG00000004458	LSM2	78	100.000	ENSPVAG00000012405	LSM2	99	100.000	Pteropus_vampyrus
ENSPSIG00000004458	LSM2	78	98.936	ENSPNYG00000019298	smx5	99	98.936	Pundamilia_nyererei
ENSPSIG00000004458	LSM2	78	98.936	ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	Pygocentrus_nattereri
ENSPSIG00000004458	LSM2	78	100.000	ENSRNOG00000048725	Lsm2	99	100.000	Rattus_norvegicus
ENSPSIG00000004458	LSM2	63	86.667	ENSRBIG00000011356	-	91	86.667	Rhinopithecus_bieti
ENSPSIG00000004458	LSM2	78	100.000	ENSRBIG00000010172	LSM2	99	100.000	Rhinopithecus_bieti
ENSPSIG00000004458	LSM2	63	86.667	ENSRROG00000030708	-	91	86.667	Rhinopithecus_roxellana
ENSPSIG00000004458	LSM2	78	100.000	ENSRROG00000030345	LSM2	99	100.000	Rhinopithecus_roxellana
ENSPSIG00000004458	LSM2	78	62.766	YBL026W	LSM2	99	62.766	Saccharomyces_cerevisiae
ENSPSIG00000004458	LSM2	78	100.000	ENSSBOG00000018943	LSM2	99	100.000	Saimiri_boliviensis_boliviensis
ENSPSIG00000004458	LSM2	78	98.936	ENSSFOG00015006734	lsm2	99	98.936	Scleropages_formosus
ENSPSIG00000004458	LSM2	80	97.917	ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	Scophthalmus_maximus
ENSPSIG00000004458	LSM2	78	98.936	ENSSDUG00000021605	smx5	99	98.936	Seriola_dumerili
ENSPSIG00000004458	LSM2	78	98.936	ENSSLDG00000002765	si:ch73-14h10.2	99	98.936	Seriola_lalandi_dorsalis
ENSPSIG00000004458	LSM2	78	98.936	ENSSPUG00000009631	LSM2	99	98.936	Sphenodon_punctatus
ENSPSIG00000004458	LSM2	78	98.936	ENSSPAG00000016904	si:ch73-14h10.2	99	98.936	Stegastes_partitus
ENSPSIG00000004458	LSM2	78	100.000	ENSSSCG00000039021	LSM2	99	100.000	Sus_scrofa
ENSPSIG00000004458	LSM2	78	97.872	ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	Takifugu_rubripes
ENSPSIG00000004458	LSM2	56	95.522	ENSTNIG00000013770	si:ch73-14h10.2	100	95.522	Tetraodon_nigroviridis
ENSPSIG00000004458	LSM2	78	100.000	ENSTTRG00000014131	LSM2	99	100.000	Tursiops_truncatus
ENSPSIG00000004458	LSM2	78	100.000	ENSUMAG00000013425	LSM2	65	100.000	Ursus_maritimus
ENSPSIG00000004458	LSM2	78	100.000	ENSVPAG00000001761	LSM2	100	100.000	Vicugna_pacos
ENSPSIG00000004458	LSM2	63	98.667	ENSVVUG00000016264	-	93	98.667	Vulpes_vulpes
ENSPSIG00000004458	LSM2	78	98.936	ENSXETG00000024077	lsm2	99	98.936	Xenopus_tropicalis
ENSPSIG00000004458	LSM2	78	97.872	ENSXCOG00000006078	si:ch73-14h10.2	100	97.872	Xiphophorus_couchianus
ENSPSIG00000004458	LSM2	78	97.872	ENSXMAG00000028018	si:ch73-14h10.2	100	97.872	Xiphophorus_maculatus