EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000005168 (Gene tree)
Gene ID: 102462409
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 68634 bases
Position: chrJH224662.1:94114-162747
Accession: 102462409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000005591	RRM_1	PF00076.22	2.2e-32	1	2
ENSPSIP00000005591	RRM_1	PF00076.22	2.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000005624	PSPC1-201	2147	XM_006138844	ENSPSIP00000005591	525 (aa)	XP_006138906	K7FC31

Gene Model

Click here to download ENSPSIG00000005168's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000005168's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000005168	PSPC1	88	58.849	ENSPSIG00000011494	SFPQ	100	57.143
ENSPSIG00000005168	PSPC1	56	72.945	ENSPSIG00000010678	NONO	89	63.433

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000005168	PSPC1	99	86.441	ENSG00000121390	PSPC1	99	86.842	Homo_sapiens
ENSPSIG00000005168	PSPC1	90	67.951	ENSAPOG00000015946	pspc1	91	66.937	Acanthochromis_polyacanthus
ENSPSIG00000005168	PSPC1	99	87.669	ENSAMEG00000017420	PSPC1	99	86.767	Ailuropoda_melanoleuca
ENSPSIG00000005168	PSPC1	91	58.776	ENSACIG00000018695	pspc1	99	53.271	Amphilophus_citrinellus
ENSPSIG00000005168	PSPC1	90	66.667	ENSAOCG00000005279	pspc1	91	65.992	Amphiprion_ocellaris
ENSPSIG00000005168	PSPC1	90	67.495	ENSAPEG00000015927	pspc1	91	66.667	Amphiprion_percula
ENSPSIG00000005168	PSPC1	88	56.568	ENSATEG00000004878	pspc1	91	55.172	Anabas_testudineus
ENSPSIG00000005168	PSPC1	77	96.782	ENSAPLG00000006246	PSPC1	100	96.782	Anas_platyrhynchos
ENSPSIG00000005168	PSPC1	88	60.300	ENSAPLG00000003643	SFPQ	83	58.584	Anas_platyrhynchos
ENSPSIG00000005168	PSPC1	100	87.992	ENSACAG00000002093	PSPC1	100	87.571	Anolis_carolinensis
ENSPSIG00000005168	PSPC1	88	55.794	ENSACAG00000013307	-	67	56.223	Anolis_carolinensis
ENSPSIG00000005168	PSPC1	99	87.091	ENSANAG00000000059	PSPC1	99	86.441	Aotus_nancymaae
ENSPSIG00000005168	PSPC1	90	58.193	ENSACLG00000027220	pspc1	99	53.208	Astatotilapia_calliptera
ENSPSIG00000005168	PSPC1	99	66.914	ENSAMXG00000036881	pspc1	99	65.556	Astyanax_mexicanus
ENSPSIG00000005168	PSPC1	99	87.476	ENSBTAG00000003934	PSPC1	99	86.553	Bos_taurus
ENSPSIG00000005168	PSPC1	99	87.283	ENSCJAG00000004554	PSPC1	99	86.629	Callithrix_jacchus
ENSPSIG00000005168	PSPC1	99	87.476	ENSCAFG00020002009	PSPC1	99	86.415	Canis_lupus_dingo
ENSPSIG00000005168	PSPC1	99	87.476	ENSCHIG00000016708	PSPC1	99	86.553	Capra_hircus
ENSPSIG00000005168	PSPC1	76	86.600	ENSTSYG00000032882	PSPC1	93	81.280	Carlito_syrichta
ENSPSIG00000005168	PSPC1	99	86.064	ENSCPOG00000000395	PSPC1	99	86.064	Cavia_porcellus
ENSPSIG00000005168	PSPC1	99	87.091	ENSCCAG00000033498	PSPC1	99	86.441	Cebus_capucinus
ENSPSIG00000005168	PSPC1	89	93.790	ENSCATG00000036434	PSPC1	91	95.455	Cercocebus_atys
ENSPSIG00000005168	PSPC1	88	83.441	ENSCLAG00000005241	PSPC1	99	83.621	Chinchilla_lanigera
ENSPSIG00000005168	PSPC1	99	81.310	ENSCHOG00000008913	PSPC1	99	81.921	Choloepus_hoffmanni
ENSPSIG00000005168	PSPC1	100	96.000	ENSCPBG00000020859	PSPC1	100	94.857	Chrysemys_picta_bellii
ENSPSIG00000005168	PSPC1	59	58.842	ENSCSAVG00000003533	-	59	57.325	Ciona_savignyi
ENSPSIG00000005168	PSPC1	77	80.049	ENSCANG00000018948	PSPC1	87	95.817	Colobus_angolensis_palliatus
ENSPSIG00000005168	PSPC1	99	86.604	ENSCGRG00001018368	Pspc1	99	86.226	Cricetulus_griseus_chok1gshd
ENSPSIG00000005168	PSPC1	99	86.604	ENSCGRG00000011724	Pspc1	99	86.226	Cricetulus_griseus_crigri
ENSPSIG00000005168	PSPC1	90	64.033	ENSCVAG00000007679	-	89	62.786	Cyprinodon_variegatus
ENSPSIG00000005168	PSPC1	99	65.112	ENSDARG00000006621	pspc1	100	68.193	Danio_rerio
ENSPSIG00000005168	PSPC1	99	86.064	ENSDNOG00000011078	PSPC1	99	86.252	Dasypus_novemcinctus
ENSPSIG00000005168	PSPC1	99	84.557	ENSDORG00000016050	Pspc1	99	84.181	Dipodomys_ordii
ENSPSIG00000005168	PSPC1	55	98.020	ENSETEG00000000502	-	72	98.020	Echinops_telfairi
ENSPSIG00000005168	PSPC1	90	56.548	ENSEBUG00000003964	-	65	68.421	Eptatretus_burgeri
ENSPSIG00000005168	PSPC1	54	47.386	ENSEBUG00000010133	pspc1	72	50.182	Eptatretus_burgeri
ENSPSIG00000005168	PSPC1	99	86.932	ENSEASG00005000119	PSPC1	99	86.692	Equus_asinus_asinus
ENSPSIG00000005168	PSPC1	99	86.932	ENSECAG00000017286	PSPC1	99	86.692	Equus_caballus
ENSPSIG00000005168	PSPC1	86	75.710	ENSEEUG00000011288	-	72	81.967	Erinaceus_europaeus
ENSPSIG00000005168	PSPC1	99	65.619	ENSELUG00000003746	pspc1	94	69.821	Esox_lucius
ENSPSIG00000005168	PSPC1	99	86.957	ENSFCAG00000027841	PSPC1	99	86.957	Felis_catus
ENSPSIG00000005168	PSPC1	100	92.628	ENSFALG00000008750	PSPC1	100	94.329	Ficedula_albicollis
ENSPSIG00000005168	PSPC1	99	87.476	ENSFDAG00000002617	PSPC1	99	87.476	Fukomys_damarensis
ENSPSIG00000005168	PSPC1	88	65.739	ENSGMOG00000015074	pspc1	86	64.807	Gadus_morhua
ENSPSIG00000005168	PSPC1	100	93.738	ENSGALG00000017142	PSPC1	100	94.118	Gallus_gallus
ENSPSIG00000005168	PSPC1	62	76.000	ENSGAFG00000006327	pspc1	67	76.000	Gambusia_affinis
ENSPSIG00000005168	PSPC1	88	64.731	ENSGACG00000014901	pspc1	94	70.294	Gasterosteus_aculeatus
ENSPSIG00000005168	PSPC1	100	96.190	ENSGAGG00000019164	PSPC1	100	94.857	Gopherus_agassizii
ENSPSIG00000005168	PSPC1	90	58.071	ENSGAGG00000017325	-	69	57.023	Gopherus_agassizii
ENSPSIG00000005168	PSPC1	99	86.252	ENSGGOG00000003414	PSPC1	99	86.654	Gorilla_gorilla
ENSPSIG00000005168	PSPC1	88	68.094	ENSHBUG00000001139	pspc1	99	61.887	Haplochromis_burtoni
ENSPSIG00000005168	PSPC1	99	86.742	ENSHGLG00000018811	PSPC1	99	86.252	Heterocephalus_glaber_female
ENSPSIG00000005168	PSPC1	66	86.667	ENSHGLG00100007962	PSPC1	98	86.377	Heterocephalus_glaber_male
ENSPSIG00000005168	PSPC1	72	69.895	ENSHCOG00000013251	pspc1	85	68.063	Hippocampus_comes
ENSPSIG00000005168	PSPC1	99	66.541	ENSIPUG00000013192	pspc1	99	65.799	Ictalurus_punctatus
ENSPSIG00000005168	PSPC1	99	86.441	ENSSTOG00000026833	PSPC1	99	86.817	Ictidomys_tridecemlineatus
ENSPSIG00000005168	PSPC1	99	86.415	ENSJJAG00000018334	Pspc1	99	86.817	Jaculus_jaculus
ENSPSIG00000005168	PSPC1	88	52.248	ENSKMAG00000013525	-	99	50.094	Kryptolebias_marmoratus
ENSPSIG00000005168	PSPC1	90	63.221	ENSLBEG00000004474	pspc1	78	69.070	Labrus_bergylta
ENSPSIG00000005168	PSPC1	99	79.087	ENSLACG00000010762	PSPC1	99	79.732	Latimeria_chalumnae
ENSPSIG00000005168	PSPC1	99	77.927	ENSLOCG00000010832	pspc1	99	77.820	Lepisosteus_oculatus
ENSPSIG00000005168	PSPC1	99	87.669	ENSLAFG00000010968	PSPC1	99	86.742	Loxodonta_africana
ENSPSIG00000005168	PSPC1	89	93.790	ENSMFAG00000032728	PSPC1	92	95.468	Macaca_fascicularis
ENSPSIG00000005168	PSPC1	89	93.790	ENSMMUG00000020262	PSPC1	99	86.654	Macaca_mulatta
ENSPSIG00000005168	PSPC1	89	93.790	ENSMNEG00000027401	PSPC1	99	86.654	Macaca_nemestrina
ENSPSIG00000005168	PSPC1	76	93.750	ENSMLEG00000039043	PSPC1	94	93.750	Mandrillus_leucophaeus
ENSPSIG00000005168	PSPC1	90	65.462	ENSMAMG00000004333	pspc1	89	60.996	Mastacembelus_armatus
ENSPSIG00000005168	PSPC1	90	58.193	ENSMZEG00005005726	pspc1	99	53.208	Maylandia_zebra
ENSPSIG00000005168	PSPC1	77	96.305	ENSMGAG00000015134	PSPC1	100	96.305	Meleagris_gallopavo
ENSPSIG00000005168	PSPC1	87	81.450	ENSMAUG00000021067	Pspc1	98	81.023	Mesocricetus_auratus
ENSPSIG00000005168	PSPC1	89	93.790	ENSMICG00000013970	PSPC1	99	86.981	Microcebus_murinus
ENSPSIG00000005168	PSPC1	99	86.038	ENSMOCG00000006060	Pspc1	99	86.629	Microtus_ochrogaster
ENSPSIG00000005168	PSPC1	90	44.200	ENSMMOG00000004352	pspc1	60	52.507	Mola_mola
ENSPSIG00000005168	PSPC1	82	93.503	ENSMODG00000008029	PSPC1	78	85.801	Monodelphis_domestica
ENSPSIG00000005168	PSPC1	88	67.304	ENSMALG00000008914	pspc1	90	65.631	Monopterus_albus
ENSPSIG00000005168	PSPC1	99	86.226	MGP_CAROLIEiJ_G0019341	Pspc1	99	86.817	Mus_caroli
ENSPSIG00000005168	PSPC1	99	86.415	ENSMUSG00000021938	Pspc1	99	87.006	Mus_musculus
ENSPSIG00000005168	PSPC1	99	86.226	MGP_PahariEiJ_G0030359	Pspc1	99	86.817	Mus_pahari
ENSPSIG00000005168	PSPC1	99	87.091	MGP_SPRETEiJ_G0020232	Pspc1	99	86.604	Mus_spretus
ENSPSIG00000005168	PSPC1	99	86.604	ENSMPUG00000013347	PSPC1	99	86.957	Mustela_putorius_furo
ENSPSIG00000005168	PSPC1	99	86.116	ENSMLUG00000017663	PSPC1	99	86.330	Myotis_lucifugus
ENSPSIG00000005168	PSPC1	99	87.283	ENSNGAG00000011271	Pspc1	99	86.226	Nannospalax_galili
ENSPSIG00000005168	PSPC1	62	67.901	ENSNBRG00000014059	pspc1	91	60.465	Neolamprologus_brichardi
ENSPSIG00000005168	PSPC1	89	94.004	ENSNLEG00000001294	PSPC1	99	86.492	Nomascus_leucogenys
ENSPSIG00000005168	PSPC1	74	96.020	ENSMEUG00000000476	PSPC1	83	80.989	Notamacropus_eugenii
ENSPSIG00000005168	PSPC1	99	75.706	ENSODEG00000007817	-	99	75.706	Octodon_degus
ENSPSIG00000005168	PSPC1	99	75.461	ENSODEG00000019012	-	99	77.365	Octodon_degus
ENSPSIG00000005168	PSPC1	88	69.017	ENSONIG00000012010	pspc1	99	61.959	Oreochromis_niloticus
ENSPSIG00000005168	PSPC1	90	66.667	ENSOANG00000011381	-	94	65.612	Ornithorhynchus_anatinus
ENSPSIG00000005168	PSPC1	76	93.750	ENSOANG00000009017	-	100	93.750	Ornithorhynchus_anatinus
ENSPSIG00000005168	PSPC1	89	94.004	ENSOCUG00000006153	PSPC1	99	86.629	Oryctolagus_cuniculus
ENSPSIG00000005168	PSPC1	88	68.308	ENSORLG00000004232	-	87	66.098	Oryzias_latipes
ENSPSIG00000005168	PSPC1	90	68.067	ENSORLG00020000578	PSPC1	88	65.690	Oryzias_latipes_hni
ENSPSIG00000005168	PSPC1	90	68.067	ENSORLG00015017480	pspc1	90	63.022	Oryzias_latipes_hsok
ENSPSIG00000005168	PSPC1	99	87.500	ENSOGAG00000012643	PSPC1	99	87.218	Otolemur_garnettii
ENSPSIG00000005168	PSPC1	87	93.696	ENSOARG00000014163	PSPC1	95	91.304	Ovis_aries
ENSPSIG00000005168	PSPC1	90	87.021	ENSPPAG00000009836	PSPC1	93	96.049	Pan_paniscus
ENSPSIG00000005168	PSPC1	99	86.957	ENSPPRG00000008833	PSPC1	99	86.957	Panthera_pardus
ENSPSIG00000005168	PSPC1	76	94.500	ENSPTIG00000016917	PSPC1	84	94.500	Panthera_tigris_altaica
ENSPSIG00000005168	PSPC1	92	86.437	ENSPTRG00000005677	PSPC1	98	86.869	Pan_troglodytes
ENSPSIG00000005168	PSPC1	89	93.790	ENSPANG00000001992	PSPC1	91	95.468	Papio_anubis
ENSPSIG00000005168	PSPC1	81	77.230	ENSPKIG00000003578	pspc1	89	73.263	Paramormyrops_kingsleyae
ENSPSIG00000005168	PSPC1	57	70.100	ENSPMGG00000015135	pspc1	83	70.234	Periophthalmus_magnuspinnatus
ENSPSIG00000005168	PSPC1	99	87.091	ENSPEMG00000015214	Pspc1	99	86.415	Peromyscus_maniculatus_bairdii
ENSPSIG00000005168	PSPC1	89	93.376	ENSPCIG00000017680	PSPC1	99	86.064	Phascolarctos_cinereus
ENSPSIG00000005168	PSPC1	88	66.879	ENSPFOG00000003362	pspc1	88	66.596	Poecilia_formosa
ENSPSIG00000005168	PSPC1	66	67.236	ENSPLAG00000004407	-	50	67.236	Poecilia_latipinna
ENSPSIG00000005168	PSPC1	88	66.879	ENSPLAG00000011540	pspc1	87	66.596	Poecilia_latipinna
ENSPSIG00000005168	PSPC1	66	67.236	ENSPMEG00000001025	-	50	67.236	Poecilia_mexicana
ENSPSIG00000005168	PSPC1	88	66.454	ENSPMEG00000008322	pspc1	87	66.170	Poecilia_mexicana
ENSPSIG00000005168	PSPC1	88	66.454	ENSPREG00000007786	pspc1	87	66.170	Poecilia_reticulata
ENSPSIG00000005168	PSPC1	99	86.513	ENSPPYG00000005186	PSPC1	99	86.792	Pongo_abelii
ENSPSIG00000005168	PSPC1	66	94.512	ENSPCAG00000008314	-	66	94.512	Procavia_capensis
ENSPSIG00000005168	PSPC1	89	89.079	ENSPCOG00000014364	PSPC1	99	82.519	Propithecus_coquereli
ENSPSIG00000005168	PSPC1	99	86.127	ENSPVAG00000005036	PSPC1	99	85.958	Pteropus_vampyrus
ENSPSIG00000005168	PSPC1	90	58.193	ENSPNYG00000008893	pspc1	99	53.396	Pundamilia_nyererei
ENSPSIG00000005168	PSPC1	99	67.043	ENSPNAG00000016511	pspc1	99	67.043	Pygocentrus_nattereri
ENSPSIG00000005168	PSPC1	99	86.038	ENSRNOG00000020782	Pspc1	99	86.629	Rattus_norvegicus
ENSPSIG00000005168	PSPC1	89	94.004	ENSRBIG00000036057	PSPC1	96	94.004	Rhinopithecus_bieti
ENSPSIG00000005168	PSPC1	99	86.898	ENSRROG00000036334	PSPC1	99	86.842	Rhinopithecus_roxellana
ENSPSIG00000005168	PSPC1	79	83.333	ENSSBOG00000028172	PSPC1	90	91.336	Saimiri_boliviensis_boliviensis
ENSPSIG00000005168	PSPC1	89	87.660	ENSSHAG00000004696	PSPC1	99	81.051	Sarcophilus_harrisii
ENSPSIG00000005168	PSPC1	81	76.526	ENSSFOG00015001395	pspc1	99	72.327	Scleropages_formosus
ENSPSIG00000005168	PSPC1	88	64.927	ENSSMAG00000001761	pspc1	82	74.545	Scophthalmus_maximus
ENSPSIG00000005168	PSPC1	88	67.206	ENSSDUG00000010651	pspc1	75	73.697	Seriola_dumerili
ENSPSIG00000005168	PSPC1	88	62.635	ENSSLDG00000004284	pspc1	86	57.917	Seriola_lalandi_dorsalis
ENSPSIG00000005168	PSPC1	99	81.696	ENSSARG00000000888	PSPC1	99	80.645	Sorex_araneus
ENSPSIG00000005168	PSPC1	89	53.715	ENSSPUG00000001136	-	54	60.882	Sphenodon_punctatus
ENSPSIG00000005168	PSPC1	99	80.266	ENSSPUG00000008550	PSPC1	99	80.952	Sphenodon_punctatus
ENSPSIG00000005168	PSPC1	91	66.004	ENSSPAG00000001921	pspc1	78	71.395	Stegastes_partitus
ENSPSIG00000005168	PSPC1	99	88.247	ENSSSCG00000009569	PSPC1	99	86.578	Sus_scrofa
ENSPSIG00000005168	PSPC1	89	98.073	ENSTGUG00000011295	PSPC1	100	98.073	Taeniopygia_guttata
ENSPSIG00000005168	PSPC1	88	62.236	ENSTRUG00000011335	pspc1	88	62.047	Takifugu_rubripes
ENSPSIG00000005168	PSPC1	88	64.240	ENSTNIG00000010358	pspc1	91	61.378	Tetraodon_nigroviridis
ENSPSIG00000005168	PSPC1	89	73.876	ENSTBEG00000002361	PSPC1	99	67.803	Tupaia_belangeri
ENSPSIG00000005168	PSPC1	99	87.861	ENSTTRG00000003343	PSPC1	99	86.528	Tursiops_truncatus
ENSPSIG00000005168	PSPC1	66	86.705	ENSUAMG00000012309	PSPC1	98	85.112	Ursus_americanus
ENSPSIG00000005168	PSPC1	89	94.004	ENSUMAG00000013993	PSPC1	96	94.004	Ursus_maritimus
ENSPSIG00000005168	PSPC1	76	94.000	ENSVPAG00000010029	PSPC1	100	94.000	Vicugna_pacos
ENSPSIG00000005168	PSPC1	99	87.476	ENSVVUG00000006414	PSPC1	99	86.415	Vulpes_vulpes
ENSPSIG00000005168	PSPC1	64	73.591	ENSXCOG00000017438	pspc1	77	74.847	Xiphophorus_couchianus
ENSPSIG00000005168	PSPC1	64	73.887	ENSXMAG00000007929	pspc1	77	75.153	Xiphophorus_maculatus