EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000005833 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: -
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 6996 bases
Position: chrJH206741.1:3837279-3844274
Accession: 102445866
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000006295	Smg4_UPF3	PF03467.15	2.4e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000006332	UPF3B-201	969	XM_006115462	ENSPSIP00000006295	282 (aa)	-	K7FE35

Gene Model

Click here to download ENSPSIG00000005833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000005833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000005833	UPF3B	85	75.934	ENSG00000125351	UPF3B	53	83.478	Homo_sapiens
ENSPSIG00000005833	UPF3B	88	68.924	ENSAPOG00000012775	upf3b	57	66.160	Acanthochromis_polyacanthus
ENSPSIG00000005833	UPF3B	92	75.385	ENSAMEG00000000163	UPF3B	55	75.285	Ailuropoda_melanoleuca
ENSPSIG00000005833	UPF3B	66	67.021	ENSACIG00000013582	upf3b	55	58.846	Amphilophus_citrinellus
ENSPSIG00000005833	UPF3B	88	66.135	ENSAOCG00000000706	upf3b	57	63.498	Amphiprion_ocellaris
ENSPSIG00000005833	UPF3B	88	68.526	ENSAPEG00000005545	upf3b	56	66.023	Amphiprion_percula
ENSPSIG00000005833	UPF3B	88	64.800	ENSATEG00000018742	upf3b	56	64.259	Anabas_testudineus
ENSPSIG00000005833	UPF3B	94	84.151	ENSACAG00000003625	UPF3B	56	84.733	Anolis_carolinensis
ENSPSIG00000005833	UPF3B	94	65.789	ENSANAG00000025598	-	54	63.878	Aotus_nancymaae
ENSPSIG00000005833	UPF3B	92	74.615	ENSANAG00000021894	-	56	83.240	Aotus_nancymaae
ENSPSIG00000005833	UPF3B	86	66.393	ENSACLG00000001649	upf3b	57	65.283	Astatotilapia_calliptera
ENSPSIG00000005833	UPF3B	63	72.928	ENSAMXG00000000199	upf3b	59	70.166	Astyanax_mexicanus
ENSPSIG00000005833	UPF3B	63	83.799	ENSBTAG00000035615	UPF3B	58	83.799	Bos_taurus
ENSPSIG00000005833	UPF3B	92	74.231	ENSCJAG00000004975	UPF3B	56	82.682	Callithrix_jacchus
ENSPSIG00000005833	UPF3B	92	74.615	ENSCAFG00000018426	UPF3B	56	74.525	Canis_familiaris
ENSPSIG00000005833	UPF3B	92	70.385	ENSCAFG00020004074	UPF3B	54	69.202	Canis_lupus_dingo
ENSPSIG00000005833	UPF3B	92	71.691	ENSCHIG00000000247	-	56	71.636	Capra_hircus
ENSPSIG00000005833	UPF3B	92	71.691	ENSCHIG00000018011	-	58	83.799	Capra_hircus
ENSPSIG00000005833	UPF3B	92	74.615	ENSTSYG00000014690	UPF3B	53	83.429	Carlito_syrichta
ENSPSIG00000005833	UPF3B	55	80.000	ENSCCAG00000021964	-	55	80.000	Cebus_capucinus
ENSPSIG00000005833	UPF3B	85	75.934	ENSCATG00000017506	UPF3B	56	83.240	Cercocebus_atys
ENSPSIG00000005833	UPF3B	85	75.934	ENSCLAG00000003260	UPF3B	56	73.881	Chinchilla_lanigera
ENSPSIG00000005833	UPF3B	85	72.727	ENSCSAG00000018348	UPF3B	56	71.636	Chlorocebus_sabaeus
ENSPSIG00000005833	UPF3B	86	90.535	ENSCPBG00000020685	UPF3B	55	90.458	Chrysemys_picta_bellii
ENSPSIG00000005833	UPF3B	63	83.240	ENSCANG00000029220	UPF3B	56	83.240	Colobus_angolensis_palliatus
ENSPSIG00000005833	UPF3B	84	64.854	ENSCGRG00001013643	-	70	63.498	Cricetulus_griseus_chok1gshd
ENSPSIG00000005833	UPF3B	84	72.803	ENSCGRG00001006858	-	55	71.483	Cricetulus_griseus_chok1gshd
ENSPSIG00000005833	UPF3B	84	72.385	ENSCGRG00000007627	Upf3b	61	71.103	Cricetulus_griseus_crigri
ENSPSIG00000005833	UPF3B	93	64.151	ENSCSEG00000002046	upf3b	54	64.615	Cynoglossus_semilaevis
ENSPSIG00000005833	UPF3B	93	63.396	ENSCVAG00000005030	upf3b	57	63.258	Cyprinodon_variegatus
ENSPSIG00000005833	UPF3B	86	67.480	ENSDARG00000000489	upf3b	56	65.399	Danio_rerio
ENSPSIG00000005833	UPF3B	90	72.388	ENSDNOG00000008665	UPF3B	57	70.357	Dasypus_novemcinctus
ENSPSIG00000005833	UPF3B	90	72.549	ENSDORG00000006077	Upf3b	56	70.896	Dipodomys_ordii
ENSPSIG00000005833	UPF3B	92	71.923	ENSEASG00005012919	UPF3B	54	71.483	Equus_asinus_asinus
ENSPSIG00000005833	UPF3B	92	71.923	ENSECAG00000016947	UPF3B	54	71.483	Equus_caballus
ENSPSIG00000005833	UPF3B	90	65.370	ENSELUG00000020389	upf3b	56	62.909	Esox_lucius
ENSPSIG00000005833	UPF3B	85	76.763	ENSFCAG00000004388	UPF3B	55	75.665	Felis_catus
ENSPSIG00000005833	UPF3B	92	82.437	ENSFALG00000001569	UPF3B	55	78.648	Ficedula_albicollis
ENSPSIG00000005833	UPF3B	90	74.902	ENSFDAG00000018869	UPF3B	56	73.134	Fukomys_damarensis
ENSPSIG00000005833	UPF3B	88	63.347	ENSFHEG00000017895	upf3b	57	63.258	Fundulus_heteroclitus
ENSPSIG00000005833	UPF3B	86	62.857	ENSGMOG00000001621	upf3b	57	60.223	Gadus_morhua
ENSPSIG00000005833	UPF3B	92	89.615	ENSGALG00000008618	UPF3B	54	89.695	Gallus_gallus
ENSPSIG00000005833	UPF3B	88	65.737	ENSGAFG00000000829	upf3b	57	65.152	Gambusia_affinis
ENSPSIG00000005833	UPF3B	86	66.939	ENSGACG00000017435	upf3b	66	77.654	Gasterosteus_aculeatus
ENSPSIG00000005833	UPF3B	86	96.296	ENSGAGG00000001219	UPF3B	56	96.183	Gopherus_agassizii
ENSPSIG00000005833	UPF3B	85	75.934	ENSGGOG00000023995	UPF3B	56	83.240	Gorilla_gorilla
ENSPSIG00000005833	UPF3B	86	66.393	ENSHBUG00000017393	upf3b	57	65.283	Haplochromis_burtoni
ENSPSIG00000005833	UPF3B	90	75.294	ENSHGLG00000019582	-	56	73.507	Heterocephalus_glaber_female
ENSPSIG00000005833	UPF3B	86	69.672	ENSHGLG00000011189	-	61	68.821	Heterocephalus_glaber_female
ENSPSIG00000005833	UPF3B	86	69.672	ENSHGLG00100001889	-	60	69.412	Heterocephalus_glaber_male
ENSPSIG00000005833	UPF3B	88	75.600	ENSHGLG00100002042	-	55	75.000	Heterocephalus_glaber_male
ENSPSIG00000005833	UPF3B	91	66.538	ENSHCOG00000017004	upf3b	56	65.660	Hippocampus_comes
ENSPSIG00000005833	UPF3B	67	76.842	ENSIPUG00000019249	upf3b	60	65.019	Ictalurus_punctatus
ENSPSIG00000005833	UPF3B	92	73.846	ENSSTOG00000001101	UPF3B	56	72.388	Ictidomys_tridecemlineatus
ENSPSIG00000005833	UPF3B	85	75.519	ENSJJAG00000000053	Upf3b	56	72.388	Jaculus_jaculus
ENSPSIG00000005833	UPF3B	88	62.903	ENSKMAG00000020300	upf3b	57	62.738	Kryptolebias_marmoratus
ENSPSIG00000005833	UPF3B	66	82.979	ENSLACG00000008691	UPF3B	50	73.840	Latimeria_chalumnae
ENSPSIG00000005833	UPF3B	68	79.275	ENSLOCG00000015238	upf3b	60	66.296	Lepisosteus_oculatus
ENSPSIG00000005833	UPF3B	92	75.000	ENSLAFG00000001267	UPF3B	55	74.905	Loxodonta_africana
ENSPSIG00000005833	UPF3B	85	75.519	ENSMFAG00000045414	UPF3B	56	83.240	Macaca_fascicularis
ENSPSIG00000005833	UPF3B	85	75.519	ENSMMUG00000020222	UPF3B	56	83.240	Macaca_mulatta
ENSPSIG00000005833	UPF3B	85	75.519	ENSMNEG00000039794	UPF3B	56	83.240	Macaca_nemestrina
ENSPSIG00000005833	UPF3B	85	75.934	ENSMLEG00000010999	UPF3B	56	83.240	Mandrillus_leucophaeus
ENSPSIG00000005833	UPF3B	86	66.393	ENSMZEG00005007871	upf3b	57	65.283	Maylandia_zebra
ENSPSIG00000005833	UPF3B	92	88.462	ENSMGAG00000007728	UPF3B	66	88.550	Meleagris_gallopavo
ENSPSIG00000005833	UPF3B	83	71.489	ENSMAUG00000008705	Upf3b	54	69.582	Mesocricetus_auratus
ENSPSIG00000005833	UPF3B	63	82.682	ENSMICG00000001743	UPF3B	56	82.682	Microcebus_murinus
ENSPSIG00000005833	UPF3B	90	68.914	ENSMOCG00000017893	Upf3b	57	67.143	Microtus_ochrogaster
ENSPSIG00000005833	UPF3B	94	60.300	ENSMMOG00000004183	upf3b	57	60.227	Mola_mola
ENSPSIG00000005833	UPF3B	93	81.061	ENSMODG00000010232	UPF3B	61	81.298	Monodelphis_domestica
ENSPSIG00000005833	UPF3B	84	66.946	ENSMALG00000008042	upf3b	57	64.794	Monopterus_albus
ENSPSIG00000005833	UPF3B	92	70.769	MGP_CAROLIEiJ_G0032999	Upf3b	92	65.702	Mus_caroli
ENSPSIG00000005833	UPF3B	84	72.385	ENSMUSG00000036572	Upf3b	91	66.116	Mus_musculus
ENSPSIG00000005833	UPF3B	92	70.769	MGP_PahariEiJ_G0031543	Upf3b	92	65.702	Mus_pahari
ENSPSIG00000005833	UPF3B	84	72.385	MGP_SPRETEiJ_G0034152	Upf3b	92	66.116	Mus_spretus
ENSPSIG00000005833	UPF3B	92	74.615	ENSMPUG00000001531	UPF3B	56	74.525	Mustela_putorius_furo
ENSPSIG00000005833	UPF3B	92	74.615	ENSMLUG00000010821	UPF3B	55	74.525	Myotis_lucifugus
ENSPSIG00000005833	UPF3B	90	71.542	ENSNGAG00000008231	Upf3b	54	72.624	Nannospalax_galili
ENSPSIG00000005833	UPF3B	85	75.934	ENSNLEG00000014897	UPF3B	55	74.525	Nomascus_leucogenys
ENSPSIG00000005833	UPF3B	72	95.652	ENSMEUG00000015615	UPF3B	51	95.652	Notamacropus_eugenii
ENSPSIG00000005833	UPF3B	90	75.591	ENSODEG00000002186	-	62	73.783	Octodon_degus
ENSPSIG00000005833	UPF3B	86	68.443	ENSONIG00000002536	upf3b	57	67.041	Oreochromis_niloticus
ENSPSIG00000005833	UPF3B	93	68.864	ENSOANG00000002594	-	61	69.517	Ornithorhynchus_anatinus
ENSPSIG00000005833	UPF3B	92	70.221	ENSOCUG00000010213	UPF3B	56	70.182	Oryctolagus_cuniculus
ENSPSIG00000005833	UPF3B	88	62.097	ENSORLG00000001026	upf3b	62	59.924	Oryzias_latipes
ENSPSIG00000005833	UPF3B	95	52.414	ENSORLG00020014317	upf3a	56	55.474	Oryzias_latipes_hni
ENSPSIG00000005833	UPF3B	88	61.694	ENSORLG00020003758	upf3b	57	59.542	Oryzias_latipes_hni
ENSPSIG00000005833	UPF3B	88	61.694	ENSORLG00015012954	upf3b	57	59.542	Oryzias_latipes_hsok
ENSPSIG00000005833	UPF3B	88	63.710	ENSOMEG00000014736	upf3b	57	61.450	Oryzias_melastigma
ENSPSIG00000005833	UPF3B	85	74.689	ENSOGAG00000004643	-	56	72.761	Otolemur_garnettii
ENSPSIG00000005833	UPF3B	90	70.312	ENSOGAG00000033003	-	56	69.697	Otolemur_garnettii
ENSPSIG00000005833	UPF3B	91	55.985	ENSOARG00000007869	-	58	54.472	Ovis_aries
ENSPSIG00000005833	UPF3B	92	70.909	ENSOARG00000016051	-	56	70.863	Ovis_aries
ENSPSIG00000005833	UPF3B	85	75.934	ENSPPAG00000040390	UPF3B	56	83.240	Pan_paniscus
ENSPSIG00000005833	UPF3B	90	76.078	ENSPPRG00000023536	UPF3B	55	76.046	Panthera_pardus
ENSPSIG00000005833	UPF3B	84	76.987	ENSPTIG00000015264	UPF3B	56	83.799	Panthera_tigris_altaica
ENSPSIG00000005833	UPF3B	85	75.934	ENSPTRG00000022228	UPF3B	56	83.240	Pan_troglodytes
ENSPSIG00000005833	UPF3B	85	75.934	ENSPANG00000000900	UPF3B	56	83.240	Papio_anubis
ENSPSIG00000005833	UPF3B	88	66.400	ENSPKIG00000019226	upf3b	56	65.267	Paramormyrops_kingsleyae
ENSPSIG00000005833	UPF3B	63	79.330	ENSPMGG00000016067	upf3b	65	78.889	Periophthalmus_magnuspinnatus
ENSPSIG00000005833	UPF3B	92	72.414	ENSPEMG00000012352	Upf3b	55	72.348	Peromyscus_maniculatus_bairdii
ENSPSIG00000005833	UPF3B	95	77.037	ENSPCIG00000028914	UPF3B	54	76.426	Phascolarctos_cinereus
ENSPSIG00000005833	UPF3B	88	65.737	ENSPLAG00000005105	upf3b	57	65.152	Poecilia_latipinna
ENSPSIG00000005833	UPF3B	88	65.737	ENSPLAG00000019922	upf3b	57	65.152	Poecilia_latipinna
ENSPSIG00000005833	UPF3B	88	65.737	ENSPMEG00000023532	upf3b	57	65.152	Poecilia_mexicana
ENSPSIG00000005833	UPF3B	64	83.333	ENSPPYG00000020675	-	54	83.333	Pongo_abelii
ENSPSIG00000005833	UPF3B	92	70.956	ENSPCAG00000009464	UPF3B	56	70.909	Procavia_capensis
ENSPSIG00000005833	UPF3B	92	74.231	ENSPCOG00000021960	UPF3B	56	82.682	Propithecus_coquereli
ENSPSIG00000005833	UPF3B	97	58.537	ENSPVAG00000014075	UPF3B	56	60.727	Pteropus_vampyrus
ENSPSIG00000005833	UPF3B	88	66.129	ENSPNYG00000009846	upf3b	57	65.399	Pundamilia_nyererei
ENSPSIG00000005833	UPF3B	86	67.886	ENSPNAG00000021528	upf3b	60	77.778	Pygocentrus_nattereri
ENSPSIG00000005833	UPF3B	84	71.967	ENSRNOG00000039994	Upf3b	54	70.722	Rattus_norvegicus
ENSPSIG00000005833	UPF3B	85	75.000	ENSRBIG00000037219	UPF3B	67	73.664	Rhinopithecus_bieti
ENSPSIG00000005833	UPF3B	85	75.934	ENSRROG00000041031	UPF3B	56	83.240	Rhinopithecus_roxellana
ENSPSIG00000005833	UPF3B	92	74.615	ENSSBOG00000019740	UPF3B	56	83.240	Saimiri_boliviensis_boliviensis
ENSPSIG00000005833	UPF3B	95	81.481	ENSSHAG00000008634	UPF3B	54	82.129	Sarcophilus_harrisii
ENSPSIG00000005833	UPF3B	85	71.901	ENSSFOG00015005614	upf3b	57	68.061	Scleropages_formosus
ENSPSIG00000005833	UPF3B	86	65.306	ENSSMAG00000012913	upf3b	58	76.536	Scophthalmus_maximus
ENSPSIG00000005833	UPF3B	67	76.190	ENSSDUG00000005682	upf3b	56	63.498	Seriola_dumerili
ENSPSIG00000005833	UPF3B	67	76.190	ENSSLDG00000003130	upf3b	56	63.498	Seriola_lalandi_dorsalis
ENSPSIG00000005833	UPF3B	90	67.669	ENSSARG00000004147	UPF3B	62	68.841	Sorex_araneus
ENSPSIG00000005833	UPF3B	92	80.228	ENSSPUG00000013082	UPF3B	53	81.061	Sphenodon_punctatus
ENSPSIG00000005833	UPF3B	88	64.516	ENSSPAG00000009989	upf3b	57	64.259	Stegastes_partitus
ENSPSIG00000005833	UPF3B	92	75.000	ENSSSCG00000012617	UPF3B	55	74.905	Sus_scrofa
ENSPSIG00000005833	UPF3B	85	90.041	ENSTGUG00000003413	UPF3B	61	89.313	Taeniopygia_guttata
ENSPSIG00000005833	UPF3B	94	62.642	ENSTRUG00000010645	upf3b	61	64.259	Takifugu_rubripes
ENSPSIG00000005833	UPF3B	94	53.558	ENSTNIG00000015763	upf3b	54	53.962	Tetraodon_nigroviridis
ENSPSIG00000005833	UPF3B	92	53.137	ENSTBEG00000003229	UPF3B	56	53.285	Tupaia_belangeri
ENSPSIG00000005833	UPF3B	90	71.373	ENSUAMG00000024565	UPF3B	56	68.519	Ursus_americanus
ENSPSIG00000005833	UPF3B	92	71.154	ENSUMAG00000002150	UPF3B	54	70.000	Ursus_maritimus
ENSPSIG00000005833	UPF3B	92	72.059	ENSVPAG00000009971	UPF3B	66	72.000	Vicugna_pacos
ENSPSIG00000005833	UPF3B	92	70.769	ENSVVUG00000011594	UPF3B	54	84.348	Vulpes_vulpes
ENSPSIG00000005833	UPF3B	93	60.967	ENSXETG00000007440	upf3b	50	84.348	Xenopus_tropicalis
ENSPSIG00000005833	UPF3B	65	77.596	ENSXCOG00000016586	upf3b	57	80.000	Xiphophorus_couchianus
ENSPSIG00000005833	UPF3B	88	68.254	ENSXMAG00000013680	upf3b	57	65.530	Xiphophorus_maculatus