EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000006289 (Gene tree)
Gene ID: 102450517
Gene Symbol: CPSF2
Alias: -
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 37468 bases
Position: chrJH211805.1:431374-468841
Accession: 102450517
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000006797	Beta-Casp	PF10996.8	1.9e-20	1	1
ENSPSIP00000006797	Lactamase_B	PF00753.27	2.3e-05	1	1
ENSPSIP00000006797	RMMBL	PF07521.12	2.4e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000006836	CPSF2-201	3168	XM_006133657	ENSPSIP00000006797	783 (aa)	XP_006133719	K7FFI7

Gene Model

Click here to download ENSPSIG00000006289's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000006289's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000006289	CPSF2	100	95.785	ENSG00000165934	CPSF2	100	95.785	Homo_sapiens
ENSPSIG00000006289	CPSF2	100	85.044	ENSAPOG00000001242	cpsf2	100	85.044	Acanthochromis_polyacanthus
ENSPSIG00000006289	CPSF2	100	84.810	ENSACIG00000009331	cpsf2	100	84.810	Amphilophus_citrinellus
ENSPSIG00000006289	CPSF2	100	85.044	ENSAOCG00000014095	cpsf2	100	85.044	Amphiprion_ocellaris
ENSPSIG00000006289	CPSF2	100	85.044	ENSAPEG00000009158	cpsf2	100	85.044	Amphiprion_percula
ENSPSIG00000006289	CPSF2	96	85.526	ENSATEG00000017644	cpsf2	100	83.306	Anabas_testudineus
ENSPSIG00000006289	CPSF2	100	97.070	ENSAPLG00000006330	CPSF2	100	97.070	Anas_platyrhynchos
ENSPSIG00000006289	CPSF2	100	95.530	ENSACAG00000009245	CPSF2	100	95.530	Anolis_carolinensis
ENSPSIG00000006289	CPSF2	100	95.785	ENSANAG00000022915	CPSF2	100	95.785	Aotus_nancymaae
ENSPSIG00000006289	CPSF2	100	86.023	ENSAMXG00000018696	cpsf2	100	86.023	Astyanax_mexicanus
ENSPSIG00000006289	CPSF2	100	96.041	ENSBTAG00000010227	CPSF2	100	96.041	Bos_taurus
ENSPSIG00000006289	CPSF2	100	41.218	WBGene00017313	cpsf-2	100	40.797	Caenorhabditis_elegans
ENSPSIG00000006289	CPSF2	100	95.785	ENSCJAG00000018069	CPSF2	100	95.785	Callithrix_jacchus
ENSPSIG00000006289	CPSF2	100	95.913	ENSCAFG00000010909	CPSF2	100	95.913	Canis_familiaris
ENSPSIG00000006289	CPSF2	100	95.913	ENSCAFG00020020670	CPSF2	100	95.913	Canis_lupus_dingo
ENSPSIG00000006289	CPSF2	100	96.041	ENSCHIG00000023848	CPSF2	100	96.041	Capra_hircus
ENSPSIG00000006289	CPSF2	100	95.275	ENSTSYG00000009036	CPSF2	100	95.275	Carlito_syrichta
ENSPSIG00000006289	CPSF2	100	96.041	ENSCPOG00000010899	CPSF2	100	96.041	Cavia_porcellus
ENSPSIG00000006289	CPSF2	100	95.785	ENSCCAG00000028088	CPSF2	100	95.785	Cebus_capucinus
ENSPSIG00000006289	CPSF2	100	95.913	ENSCATG00000030132	CPSF2	100	95.913	Cercocebus_atys
ENSPSIG00000006289	CPSF2	100	95.913	ENSCLAG00000012404	CPSF2	100	95.913	Chinchilla_lanigera
ENSPSIG00000006289	CPSF2	100	95.913	ENSCSAG00000011300	CPSF2	100	95.913	Chlorocebus_sabaeus
ENSPSIG00000006289	CPSF2	100	89.400	ENSCHOG00000012904	CPSF2	100	89.400	Choloepus_hoffmanni
ENSPSIG00000006289	CPSF2	100	98.595	ENSCPBG00000008766	CPSF2	97	98.595	Chrysemys_picta_bellii
ENSPSIG00000006289	CPSF2	100	54.250	ENSCING00000007881	-	100	53.875	Ciona_intestinalis
ENSPSIG00000006289	CPSF2	94	95.771	ENSCANG00000041651	CPSF2	100	95.771	Colobus_angolensis_palliatus
ENSPSIG00000006289	CPSF2	100	95.785	ENSCGRG00001006901	Cpsf2	100	95.785	Cricetulus_griseus_chok1gshd
ENSPSIG00000006289	CPSF2	100	95.785	ENSCGRG00000012416	Cpsf2	100	95.785	Cricetulus_griseus_crigri
ENSPSIG00000006289	CPSF2	100	83.397	ENSCSEG00000004116	cpsf2	100	83.397	Cynoglossus_semilaevis
ENSPSIG00000006289	CPSF2	100	84.791	ENSCVAG00000000095	cpsf2	100	84.918	Cyprinodon_variegatus
ENSPSIG00000006289	CPSF2	100	85.823	ENSDARG00000028971	cpsf2	100	85.823	Danio_rerio
ENSPSIG00000006289	CPSF2	100	96.041	ENSDNOG00000042757	CPSF2	100	96.041	Dasypus_novemcinctus
ENSPSIG00000006289	CPSF2	100	95.785	ENSDORG00000013709	Cpsf2	100	95.785	Dipodomys_ordii
ENSPSIG00000006289	CPSF2	100	52.677	FBgn0027873	Cpsf100	100	52.434	Drosophila_melanogaster
ENSPSIG00000006289	CPSF2	100	86.735	ENSETEG00000012123	CPSF2	100	86.735	Echinops_telfairi
ENSPSIG00000006289	CPSF2	52	76.471	ENSEBUG00000012098	cpsf2	93	76.471	Eptatretus_burgeri
ENSPSIG00000006289	CPSF2	91	95.904	ENSEASG00005021193	CPSF2	100	95.904	Equus_asinus_asinus
ENSPSIG00000006289	CPSF2	100	95.913	ENSECAG00000023935	CPSF2	100	95.913	Equus_caballus
ENSPSIG00000006289	CPSF2	100	84.567	ENSELUG00000008442	cpsf2	100	84.567	Esox_lucius
ENSPSIG00000006289	CPSF2	100	95.913	ENSFCAG00000007886	CPSF2	100	95.913	Felis_catus
ENSPSIG00000006289	CPSF2	100	97.190	ENSFALG00000002412	CPSF2	100	97.190	Ficedula_albicollis
ENSPSIG00000006289	CPSF2	100	95.913	ENSFDAG00000006327	CPSF2	100	95.913	Fukomys_damarensis
ENSPSIG00000006289	CPSF2	96	84.375	ENSFHEG00000015465	cpsf2	98	84.635	Fundulus_heteroclitus
ENSPSIG00000006289	CPSF2	100	83.102	ENSGMOG00000008761	cpsf2	100	83.102	Gadus_morhua
ENSPSIG00000006289	CPSF2	100	96.807	ENSGALG00000010783	CPSF2	100	96.807	Gallus_gallus
ENSPSIG00000006289	CPSF2	100	84.791	ENSGAFG00000001407	cpsf2	100	84.791	Gambusia_affinis
ENSPSIG00000006289	CPSF2	100	84.664	ENSGACG00000008418	cpsf2	100	84.664	Gasterosteus_aculeatus
ENSPSIG00000006289	CPSF2	100	98.723	ENSGAGG00000008287	CPSF2	100	98.723	Gopherus_agassizii
ENSPSIG00000006289	CPSF2	100	95.785	ENSGGOG00000011799	CPSF2	100	95.785	Gorilla_gorilla
ENSPSIG00000006289	CPSF2	100	84.664	ENSHBUG00000023466	cpsf2	100	84.664	Haplochromis_burtoni
ENSPSIG00000006289	CPSF2	100	95.785	ENSHGLG00000018311	CPSF2	100	95.785	Heterocephalus_glaber_female
ENSPSIG00000006289	CPSF2	100	95.785	ENSHGLG00100016460	CPSF2	100	95.785	Heterocephalus_glaber_male
ENSPSIG00000006289	CPSF2	100	84.918	ENSHCOG00000019527	cpsf2	98	84.918	Hippocampus_comes
ENSPSIG00000006289	CPSF2	100	85.896	ENSIPUG00000020857	cpsf2	100	85.896	Ictalurus_punctatus
ENSPSIG00000006289	CPSF2	100	95.913	ENSSTOG00000009528	CPSF2	100	95.913	Ictidomys_tridecemlineatus
ENSPSIG00000006289	CPSF2	100	96.041	ENSJJAG00000017925	Cpsf2	100	96.041	Jaculus_jaculus
ENSPSIG00000006289	CPSF2	100	83.904	ENSKMAG00000019429	cpsf2	100	83.904	Kryptolebias_marmoratus
ENSPSIG00000006289	CPSF2	95	84.337	ENSLBEG00000011585	cpsf2	100	84.091	Labrus_bergylta
ENSPSIG00000006289	CPSF2	100	89.527	ENSLACG00000019024	CPSF2	100	90.294	Latimeria_chalumnae
ENSPSIG00000006289	CPSF2	100	87.199	ENSLOCG00000014102	cpsf2	100	87.199	Lepisosteus_oculatus
ENSPSIG00000006289	CPSF2	100	95.669	ENSLAFG00000004891	CPSF2	100	95.669	Loxodonta_africana
ENSPSIG00000006289	CPSF2	100	95.913	ENSMFAG00000041212	CPSF2	100	95.913	Macaca_fascicularis
ENSPSIG00000006289	CPSF2	100	95.913	ENSMMUG00000000699	CPSF2	100	95.913	Macaca_mulatta
ENSPSIG00000006289	CPSF2	100	95.913	ENSMNEG00000031584	CPSF2	100	95.913	Macaca_nemestrina
ENSPSIG00000006289	CPSF2	100	95.913	ENSMLEG00000029394	CPSF2	100	95.913	Mandrillus_leucophaeus
ENSPSIG00000006289	CPSF2	100	85.171	ENSMAMG00000004235	cpsf2	100	85.171	Mastacembelus_armatus
ENSPSIG00000006289	CPSF2	100	84.791	ENSMZEG00005001769	cpsf2	100	84.791	Maylandia_zebra
ENSPSIG00000006289	CPSF2	100	96.811	ENSMGAG00000013122	CPSF2	100	96.811	Meleagris_gallopavo
ENSPSIG00000006289	CPSF2	100	95.913	ENSMAUG00000015160	Cpsf2	100	95.913	Mesocricetus_auratus
ENSPSIG00000006289	CPSF2	100	95.785	ENSMICG00000016441	CPSF2	100	95.785	Microcebus_murinus
ENSPSIG00000006289	CPSF2	100	95.785	ENSMOCG00000015372	Cpsf2	100	95.785	Microtus_ochrogaster
ENSPSIG00000006289	CPSF2	100	80.608	ENSMMOG00000015590	cpsf2	100	80.608	Mola_mola
ENSPSIG00000006289	CPSF2	100	96.296	ENSMODG00000002042	CPSF2	100	96.296	Monodelphis_domestica
ENSPSIG00000006289	CPSF2	100	82.383	ENSMALG00000022275	cpsf2	100	82.383	Monopterus_albus
ENSPSIG00000006289	CPSF2	100	95.019	ENSMUSG00000041781	Cpsf2	100	95.019	Mus_musculus
ENSPSIG00000006289	CPSF2	100	95.147	MGP_PahariEiJ_G0029791	Cpsf2	100	95.147	Mus_pahari
ENSPSIG00000006289	CPSF2	100	95.019	MGP_SPRETEiJ_G0018877	Cpsf2	100	95.019	Mus_spretus
ENSPSIG00000006289	CPSF2	100	95.913	ENSMPUG00000007617	CPSF2	98	95.913	Mustela_putorius_furo
ENSPSIG00000006289	CPSF2	100	95.530	ENSMLUG00000005570	CPSF2	100	95.530	Myotis_lucifugus
ENSPSIG00000006289	CPSF2	100	95.658	ENSNGAG00000020312	Cpsf2	100	95.658	Nannospalax_galili
ENSPSIG00000006289	CPSF2	100	84.918	ENSNBRG00000022402	cpsf2	100	84.918	Neolamprologus_brichardi
ENSPSIG00000006289	CPSF2	100	94.891	ENSNLEG00000017132	CPSF2	100	94.891	Nomascus_leucogenys
ENSPSIG00000006289	CPSF2	91	98.706	ENSMEUG00000008138	CPSF2	91	98.706	Notamacropus_eugenii
ENSPSIG00000006289	CPSF2	87	97.333	ENSOPRG00000008484	-	93	97.333	Ochotona_princeps
ENSPSIG00000006289	CPSF2	100	95.658	ENSODEG00000008682	CPSF2	100	95.658	Octodon_degus
ENSPSIG00000006289	CPSF2	100	85.171	ENSONIG00000005901	cpsf2	100	85.171	Oreochromis_niloticus
ENSPSIG00000006289	CPSF2	100	96.041	ENSOANG00000003822	CPSF2	100	96.041	Ornithorhynchus_anatinus
ENSPSIG00000006289	CPSF2	100	96.041	ENSOCUG00000005713	CPSF2	100	96.041	Oryctolagus_cuniculus
ENSPSIG00000006289	CPSF2	100	79.341	ENSORLG00000011628	cpsf2	100	79.341	Oryzias_latipes
ENSPSIG00000006289	CPSF2	100	84.284	ENSORLG00020016980	cpsf2	100	84.284	Oryzias_latipes_hni
ENSPSIG00000006289	CPSF2	100	84.284	ENSORLG00015011910	cpsf2	100	84.284	Oryzias_latipes_hsok
ENSPSIG00000006289	CPSF2	100	83.777	ENSOMEG00000022876	cpsf2	100	83.904	Oryzias_melastigma
ENSPSIG00000006289	CPSF2	100	92.994	ENSOARG00000012889	CPSF2	100	92.994	Ovis_aries
ENSPSIG00000006289	CPSF2	100	95.785	ENSPPAG00000039666	CPSF2	100	95.785	Pan_paniscus
ENSPSIG00000006289	CPSF2	99	95.908	ENSPPRG00000010869	CPSF2	100	95.908	Panthera_pardus
ENSPSIG00000006289	CPSF2	100	95.913	ENSPTIG00000021202	CPSF2	100	95.913	Panthera_tigris_altaica
ENSPSIG00000006289	CPSF2	100	95.785	ENSPTRG00000006651	CPSF2	100	95.785	Pan_troglodytes
ENSPSIG00000006289	CPSF2	100	95.913	ENSPANG00000017417	CPSF2	100	95.913	Papio_anubis
ENSPSIG00000006289	CPSF2	100	81.194	ENSPKIG00000021453	cpsf2	100	81.194	Paramormyrops_kingsleyae
ENSPSIG00000006289	CPSF2	76	78.738	ENSPMGG00000002511	cpsf2	100	79.236	Periophthalmus_magnuspinnatus
ENSPSIG00000006289	CPSF2	100	95.913	ENSPEMG00000007917	Cpsf2	100	95.913	Peromyscus_maniculatus_bairdii
ENSPSIG00000006289	CPSF2	100	73.485	ENSPMAG00000006205	cpsf2	100	73.485	Petromyzon_marinus
ENSPSIG00000006289	CPSF2	100	96.296	ENSPCIG00000011393	CPSF2	100	96.296	Phascolarctos_cinereus
ENSPSIG00000006289	CPSF2	100	84.791	ENSPFOG00000018648	cpsf2	100	84.791	Poecilia_formosa
ENSPSIG00000006289	CPSF2	100	84.791	ENSPLAG00000019199	cpsf2	99	84.791	Poecilia_latipinna
ENSPSIG00000006289	CPSF2	96	85.132	ENSPMEG00000012100	cpsf2	100	84.358	Poecilia_mexicana
ENSPSIG00000006289	CPSF2	100	84.791	ENSPREG00000008960	cpsf2	100	84.791	Poecilia_reticulata
ENSPSIG00000006289	CPSF2	63	94.366	ENSPPYG00000029685	-	100	94.366	Pongo_abelii
ENSPSIG00000006289	CPSF2	100	95.785	ENSPCAG00000012477	CPSF2	100	95.785	Procavia_capensis
ENSPSIG00000006289	CPSF2	100	95.785	ENSPCOG00000026387	CPSF2	100	95.785	Propithecus_coquereli
ENSPSIG00000006289	CPSF2	65	97.449	ENSPVAG00000004223	CPSF2	65	97.449	Pteropus_vampyrus
ENSPSIG00000006289	CPSF2	100	84.810	ENSPNYG00000023356	cpsf2	100	84.810	Pundamilia_nyererei
ENSPSIG00000006289	CPSF2	100	86.912	ENSPNAG00000001849	cpsf2	100	86.912	Pygocentrus_nattereri
ENSPSIG00000006289	CPSF2	100	95.275	ENSRNOG00000005733	Cpsf2	100	95.275	Rattus_norvegicus
ENSPSIG00000006289	CPSF2	100	95.913	ENSRBIG00000044792	CPSF2	100	95.913	Rhinopithecus_bieti
ENSPSIG00000006289	CPSF2	100	95.913	ENSRROG00000034875	CPSF2	100	95.913	Rhinopithecus_roxellana
ENSPSIG00000006289	CPSF2	100	95.785	ENSSBOG00000024571	CPSF2	100	95.785	Saimiri_boliviensis_boliviensis
ENSPSIG00000006289	CPSF2	100	96.296	ENSSHAG00000010458	CPSF2	100	96.296	Sarcophilus_harrisii
ENSPSIG00000006289	CPSF2	100	87.039	ENSSFOG00015002117	cpsf2	100	87.039	Scleropages_formosus
ENSPSIG00000006289	CPSF2	100	84.537	ENSSMAG00000002001	cpsf2	100	85.044	Scophthalmus_maximus
ENSPSIG00000006289	CPSF2	100	85.551	ENSSDUG00000004084	cpsf2	100	85.551	Seriola_dumerili
ENSPSIG00000006289	CPSF2	100	85.044	ENSSLDG00000024330	cpsf2	100	85.044	Seriola_lalandi_dorsalis
ENSPSIG00000006289	CPSF2	58	100.000	ENSSARG00000009784	-	63	100.000	Sorex_araneus
ENSPSIG00000006289	CPSF2	100	96.807	ENSSPUG00000013485	CPSF2	100	96.807	Sphenodon_punctatus
ENSPSIG00000006289	CPSF2	100	84.791	ENSSPAG00000013284	cpsf2	100	84.791	Stegastes_partitus
ENSPSIG00000006289	CPSF2	100	95.913	ENSSSCG00000002447	CPSF2	100	95.913	Sus_scrofa
ENSPSIG00000006289	CPSF2	100	97.063	ENSTGUG00000012571	-	100	97.063	Taeniopygia_guttata
ENSPSIG00000006289	CPSF2	100	84.157	ENSTRUG00000003742	cpsf2	100	84.157	Takifugu_rubripes
ENSPSIG00000006289	CPSF2	100	83.312	ENSTNIG00000012228	cpsf2	100	84.071	Tetraodon_nigroviridis
ENSPSIG00000006289	CPSF2	91	100.000	ENSTBEG00000004530	CPSF2	94	100.000	Tupaia_belangeri
ENSPSIG00000006289	CPSF2	88	97.917	ENSTTRG00000008697	CPSF2	88	97.917	Tursiops_truncatus
ENSPSIG00000006289	CPSF2	100	96.041	ENSUAMG00000028071	CPSF2	100	96.041	Ursus_americanus
ENSPSIG00000006289	CPSF2	100	96.041	ENSUMAG00000005029	CPSF2	100	96.041	Ursus_maritimus
ENSPSIG00000006289	CPSF2	99	95.908	ENSVPAG00000003503	CPSF2	100	95.908	Vicugna_pacos
ENSPSIG00000006289	CPSF2	100	95.913	ENSVVUG00000024642	CPSF2	100	95.913	Vulpes_vulpes
ENSPSIG00000006289	CPSF2	100	91.443	ENSXETG00000010289	cpsf2	100	91.443	Xenopus_tropicalis
ENSPSIG00000006289	CPSF2	100	84.918	ENSXCOG00000001764	cpsf2	100	84.918	Xiphophorus_couchianus
ENSPSIG00000006289	CPSF2	100	85.044	ENSXMAG00000017048	cpsf2	100	85.044	Xiphophorus_maculatus