EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000006660 (Gene tree)
Gene ID: 102452622
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 173067 bases
Position: chrJH207368.1:158572-331638
Accession: 102452622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000007215	EST1	PF10374.9	5.8e-15	1	1
ENSPSIP00000007215	EST1_DNA_bind	PF10373.9	1.2e-60	1	1
ENSPSIP00000007215	PIN_4	PF13638.6	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000007256	SMG6-201	3921	XM_006118019	ENSPSIP00000007215	1306 (aa)	-	K7FGQ5

Gene Model

Click here to download ENSPSIG00000006660's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000006660's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000006660	SMG6	96	70.367	ENSG00000070366	SMG6	93	84.021	Homo_sapiens
ENSPSIG00000006660	SMG6	86	51.367	ENSAPOG00000019448	smg6	71	51.069	Acanthochromis_polyacanthus
ENSPSIG00000006660	SMG6	96	71.026	ENSAMEG00000007632	SMG6	89	70.948	Ailuropoda_melanoleuca
ENSPSIG00000006660	SMG6	68	58.307	ENSACIG00000012997	smg6	72	52.314	Amphilophus_citrinellus
ENSPSIG00000006660	SMG6	86	50.576	ENSAOCG00000002630	smg6	72	50.770	Amphiprion_ocellaris
ENSPSIG00000006660	SMG6	86	50.576	ENSAPEG00000019101	smg6	72	50.606	Amphiprion_percula
ENSPSIG00000006660	SMG6	86	51.338	ENSATEG00000006483	smg6	71	50.485	Anabas_testudineus
ENSPSIG00000006660	SMG6	92	62.156	ENSACAG00000011783	SMG6	97	62.156	Anolis_carolinensis
ENSPSIG00000006660	SMG6	96	70.703	ENSANAG00000035760	SMG6	89	70.625	Aotus_nancymaae
ENSPSIG00000006660	SMG6	67	56.947	ENSACLG00000005288	smg6	74	51.967	Astatotilapia_calliptera
ENSPSIG00000006660	SMG6	64	61.203	ENSAMXG00000017326	smg6	90	48.137	Astyanax_mexicanus
ENSPSIG00000006660	SMG6	96	71.451	ENSBTAG00000000267	SMG6	89	71.317	Bos_taurus
ENSPSIG00000006660	SMG6	96	70.680	ENSCJAG00000001820	SMG6	89	70.602	Callithrix_jacchus
ENSPSIG00000006660	SMG6	96	71.339	ENSCAFG00000019260	SMG6	89	71.261	Canis_familiaris
ENSPSIG00000006660	SMG6	96	71.339	ENSCAFG00020009770	SMG6	89	71.261	Canis_lupus_dingo
ENSPSIG00000006660	SMG6	96	70.588	ENSCHIG00000021998	SMG6	89	70.611	Capra_hircus
ENSPSIG00000006660	SMG6	96	70.515	ENSTSYG00000003406	SMG6	89	70.515	Carlito_syrichta
ENSPSIG00000006660	SMG6	96	57.602	ENSCAPG00000016197	SMG6	88	64.808	Cavia_aperea
ENSPSIG00000006660	SMG6	96	69.711	ENSCPOG00000014878	SMG6	98	77.922	Cavia_porcellus
ENSPSIG00000006660	SMG6	96	71.016	ENSCCAG00000035801	SMG6	89	70.938	Cebus_capucinus
ENSPSIG00000006660	SMG6	96	70.837	ENSCATG00000031956	SMG6	89	70.758	Cercocebus_atys
ENSPSIG00000006660	SMG6	96	71.061	ENSCLAG00000006748	SMG6	93	80.180	Chinchilla_lanigera
ENSPSIG00000006660	SMG6	96	71.071	ENSCSAG00000013800	SMG6	89	70.993	Chlorocebus_sabaeus
ENSPSIG00000006660	SMG6	53	86.567	ENSCHOG00000005024	-	63	86.567	Choloepus_hoffmanni
ENSPSIG00000006660	SMG6	96	91.515	ENSCPBG00000020369	SMG6	89	91.515	Chrysemys_picta_bellii
ENSPSIG00000006660	SMG6	96	70.446	ENSCANG00000031764	SMG6	90	70.367	Colobus_angolensis_palliatus
ENSPSIG00000006660	SMG6	58	61.966	ENSCGRG00001019595	Smg6	96	76.667	Cricetulus_griseus_chok1gshd
ENSPSIG00000006660	SMG6	96	64.179	ENSCGRG00000007782	Smg6	90	64.101	Cricetulus_griseus_crigri
ENSPSIG00000006660	SMG6	95	53.203	ENSCSEG00000012757	smg6	80	53.227	Cynoglossus_semilaevis
ENSPSIG00000006660	SMG6	80	52.240	ENSCVAG00000012789	smg6	65	52.453	Cyprinodon_variegatus
ENSPSIG00000006660	SMG6	96	47.279	ENSDARG00000100481	smg6	82	47.832	Danio_rerio
ENSPSIG00000006660	SMG6	96	70.391	ENSDNOG00000048283	SMG6	89	70.312	Dasypus_novemcinctus
ENSPSIG00000006660	SMG6	92	82.711	ENSDORG00000016614	Smg6	94	80.631	Dipodomys_ordii
ENSPSIG00000006660	SMG6	96	67.536	ENSETEG00000016790	SMG6	88	67.245	Echinops_telfairi
ENSPSIG00000006660	SMG6	60	47.774	ENSEBUG00000005059	smg6	52	47.533	Eptatretus_burgeri
ENSPSIG00000006660	SMG6	96	71.991	ENSEASG00005009318	SMG6	88	71.991	Equus_asinus_asinus
ENSPSIG00000006660	SMG6	97	71.417	ENSECAG00000006519	SMG6	88	71.833	Equus_caballus
ENSPSIG00000006660	SMG6	96	60.801	ENSEEUG00000003493	SMG6	89	60.784	Erinaceus_europaeus
ENSPSIG00000006660	SMG6	67	58.485	ENSELUG00000005934	smg6	63	52.848	Esox_lucius
ENSPSIG00000006660	SMG6	96	71.417	ENSFCAG00000028817	SMG6	89	71.339	Felis_catus
ENSPSIG00000006660	SMG6	96	80.095	ENSFALG00000006538	SMG6	90	80.412	Ficedula_albicollis
ENSPSIG00000006660	SMG6	96	71.104	ENSFDAG00000015106	SMG6	100	73.878	Fukomys_damarensis
ENSPSIG00000006660	SMG6	81	51.396	ENSFHEG00000013282	smg6	67	52.007	Fundulus_heteroclitus
ENSPSIG00000006660	SMG6	96	79.700	ENSGALG00000003108	SMG6	91	79.016	Gallus_gallus
ENSPSIG00000006660	SMG6	82	51.965	ENSGAFG00000000379	smg6	66	52.502	Gambusia_affinis
ENSPSIG00000006660	SMG6	89	50.531	ENSGACG00000020521	smg6	90	51.485	Gasterosteus_aculeatus
ENSPSIG00000006660	SMG6	96	90.310	ENSGAGG00000025617	SMG6	91	90.310	Gopherus_agassizii
ENSPSIG00000006660	SMG6	96	70.993	ENSGGOG00000017156	SMG6	89	70.915	Gorilla_gorilla
ENSPSIG00000006660	SMG6	84	50.042	ENSHBUG00000021311	smg6	69	52.007	Haplochromis_burtoni
ENSPSIG00000006660	SMG6	96	70.180	ENSHGLG00000012882	SMG6	94	79.372	Heterocephalus_glaber_female
ENSPSIG00000006660	SMG6	96	70.336	ENSHGLG00100017815	SMG6	94	79.372	Heterocephalus_glaber_male
ENSPSIG00000006660	SMG6	67	56.291	ENSHCOG00000008761	smg6	73	55.676	Hippocampus_comes
ENSPSIG00000006660	SMG6	80	52.618	ENSIPUG00000012493	smg6	68	53.156	Ictalurus_punctatus
ENSPSIG00000006660	SMG6	96	71.496	ENSSTOG00000028127	SMG6	94	80.717	Ictidomys_tridecemlineatus
ENSPSIG00000006660	SMG6	84	68.198	ENSJJAG00000015367	Smg6	93	66.754	Jaculus_jaculus
ENSPSIG00000006660	SMG6	86	49.879	ENSKMAG00000000279	smg6	83	47.264	Kryptolebias_marmoratus
ENSPSIG00000006660	SMG6	81	51.986	ENSLBEG00000002184	smg6	67	51.580	Labrus_bergylta
ENSPSIG00000006660	SMG6	61	57.004	ENSLACG00000000806	-	98	57.613	Latimeria_chalumnae
ENSPSIG00000006660	SMG6	68	62.753	ENSLOCG00000006448	smg6	90	51.827	Lepisosteus_oculatus
ENSPSIG00000006660	SMG6	96	70.556	ENSLAFG00000001261	SMG6	89	70.478	Loxodonta_africana
ENSPSIG00000006660	SMG6	96	71.149	ENSMFAG00000003394	SMG6	89	71.071	Macaca_fascicularis
ENSPSIG00000006660	SMG6	96	71.071	ENSMMUG00000023161	SMG6	89	70.993	Macaca_mulatta
ENSPSIG00000006660	SMG6	96	67.057	ENSMNEG00000044592	SMG6	88	66.979	Macaca_nemestrina
ENSPSIG00000006660	SMG6	96	68.260	ENSMLEG00000029353	SMG6	89	68.182	Mandrillus_leucophaeus
ENSPSIG00000006660	SMG6	81	52.991	ENSMAMG00000020119	smg6	72	53.002	Mastacembelus_armatus
ENSPSIG00000006660	SMG6	67	56.737	ENSMZEG00005024736	smg6	69	51.762	Maylandia_zebra
ENSPSIG00000006660	SMG6	79	75.526	ENSMGAG00000005401	-	98	75.813	Meleagris_gallopavo
ENSPSIG00000006660	SMG6	96	71.562	ENSMICG00000012913	SMG6	89	71.484	Microcebus_murinus
ENSPSIG00000006660	SMG6	81	51.888	ENSMMOG00000010883	smg6	70	52.327	Mola_mola
ENSPSIG00000006660	SMG6	96	71.809	ENSMODG00000010622	SMG6	89	71.574	Monodelphis_domestica
ENSPSIG00000006660	SMG6	81	53.100	ENSMALG00000001106	smg6	66	53.106	Monopterus_albus
ENSPSIG00000006660	SMG6	96	69.961	MGP_CAROLIEiJ_G0016729	Smg6	98	82.133	Mus_caroli
ENSPSIG00000006660	SMG6	96	69.725	ENSMUSG00000038290	Smg6	97	81.556	Mus_musculus
ENSPSIG00000006660	SMG6	96	69.098	MGP_PahariEiJ_G0017866	Smg6	98	80.692	Mus_pahari
ENSPSIG00000006660	SMG6	96	69.725	MGP_SPRETEiJ_G0017572	Smg6	98	81.844	Mus_spretus
ENSPSIG00000006660	SMG6	96	71.261	ENSMPUG00000013046	SMG6	89	71.182	Mustela_putorius_furo
ENSPSIG00000006660	SMG6	96	71.115	ENSMLUG00000005739	SMG6	89	71.036	Myotis_lucifugus
ENSPSIG00000006660	SMG6	96	70.533	ENSNGAG00000007287	Smg6	94	78.475	Nannospalax_galili
ENSPSIG00000006660	SMG6	84	49.456	ENSNBRG00000009511	smg6	75	51.169	Neolamprologus_brichardi
ENSPSIG00000006660	SMG6	97	70.272	ENSNLEG00000017171	SMG6	90	70.195	Nomascus_leucogenys
ENSPSIG00000006660	SMG6	96	68.578	ENSMEUG00000015804	SMG6	90	68.500	Notamacropus_eugenii
ENSPSIG00000006660	SMG6	60	76.018	ENSOPRG00000000579	SMG6	82	74.208	Ochotona_princeps
ENSPSIG00000006660	SMG6	92	81.176	ENSODEG00000008038	SMG6	88	81.176	Octodon_degus
ENSPSIG00000006660	SMG6	97	47.665	ENSONIG00000005594	smg6	88	49.664	Oreochromis_niloticus
ENSPSIG00000006660	SMG6	96	70.837	ENSOCUG00000013018	SMG6	89	70.915	Oryctolagus_cuniculus
ENSPSIG00000006660	SMG6	81	51.391	ENSORLG00000003317	smg6	68	51.646	Oryzias_latipes
ENSPSIG00000006660	SMG6	81	51.396	ENSORLG00020015343	smg6	68	51.691	Oryzias_latipes_hni
ENSPSIG00000006660	SMG6	81	51.565	ENSORLG00015020454	smg6	68	52.035	Oryzias_latipes_hsok
ENSPSIG00000006660	SMG6	79	51.578	ENSOMEG00000010838	smg6	67	51.325	Oryzias_melastigma
ENSPSIG00000006660	SMG6	96	71.038	ENSOGAG00000004483	SMG6	89	70.960	Otolemur_garnettii
ENSPSIG00000006660	SMG6	96	70.787	ENSOARG00000015076	SMG6	90	70.810	Ovis_aries
ENSPSIG00000006660	SMG6	96	70.781	ENSPPAG00000043296	SMG6	89	70.703	Pan_paniscus
ENSPSIG00000006660	SMG6	96	71.339	ENSPPRG00000014581	SMG6	89	71.261	Panthera_pardus
ENSPSIG00000006660	SMG6	96	71.384	ENSPTIG00000008925	SMG6	88	71.305	Panthera_tigris_altaica
ENSPSIG00000006660	SMG6	96	70.758	ENSPTRG00000008544	SMG6	89	70.680	Pan_troglodytes
ENSPSIG00000006660	SMG6	96	70.915	ENSPANG00000024588	SMG6	89	70.837	Papio_anubis
ENSPSIG00000006660	SMG6	96	47.345	ENSPMGG00000000844	smg6	89	57.960	Periophthalmus_magnuspinnatus
ENSPSIG00000006660	SMG6	96	70.039	ENSPEMG00000020707	Smg6	98	77.293	Peromyscus_maniculatus_bairdii
ENSPSIG00000006660	SMG6	98	49.001	ENSPFOG00000012035	smg6	90	49.295	Poecilia_formosa
ENSPSIG00000006660	SMG6	82	51.736	ENSPLAG00000017660	smg6	68	51.997	Poecilia_latipinna
ENSPSIG00000006660	SMG6	82	51.727	ENSPMEG00000000258	smg6	68	52.340	Poecilia_mexicana
ENSPSIG00000006660	SMG6	82	52.129	ENSPREG00000010066	smg6	68	52.344	Poecilia_reticulata
ENSPSIG00000006660	SMG6	96	65.289	ENSPPYG00000007790	SMG6	89	65.211	Pongo_abelii
ENSPSIG00000006660	SMG6	96	67.972	ENSPCAG00000000552	SMG6	89	67.972	Procavia_capensis
ENSPSIG00000006660	SMG6	96	71.172	ENSPCOG00000020925	SMG6	89	71.094	Propithecus_coquereli
ENSPSIG00000006660	SMG6	80	72.495	ENSPVAG00000002159	SMG6	74	72.401	Pteropus_vampyrus
ENSPSIG00000006660	SMG6	84	51.460	ENSPNYG00000024151	smg6	74	53.133	Pundamilia_nyererei
ENSPSIG00000006660	SMG6	80	49.823	ENSPNAG00000015480	smg6	88	50.487	Pygocentrus_nattereri
ENSPSIG00000006660	SMG6	96	69.327	ENSRNOG00000003041	Smg6	97	81.844	Rattus_norvegicus
ENSPSIG00000006660	SMG6	96	70.703	ENSRBIG00000024746	SMG6	89	70.625	Rhinopithecus_bieti
ENSPSIG00000006660	SMG6	96	70.625	ENSRROG00000030423	SMG6	90	70.501	Rhinopithecus_roxellana
ENSPSIG00000006660	SMG6	96	71.228	ENSSBOG00000022518	SMG6	89	71.149	Saimiri_boliviensis_boliviensis
ENSPSIG00000006660	SMG6	97	71.518	ENSSHAG00000010045	SMG6	89	71.440	Sarcophilus_harrisii
ENSPSIG00000006660	SMG6	79	54.642	ENSSFOG00015005436	smg6	62	54.739	Scleropages_formosus
ENSPSIG00000006660	SMG6	81	53.155	ENSSMAG00000019777	smg6	66	53.074	Scophthalmus_maximus
ENSPSIG00000006660	SMG6	81	52.865	ENSSDUG00000016412	smg6	66	53.368	Seriola_dumerili
ENSPSIG00000006660	SMG6	81	52.838	ENSSLDG00000020747	smg6	71	53.152	Seriola_lalandi_dorsalis
ENSPSIG00000006660	SMG6	96	76.461	ENSSPUG00000007152	SMG6	88	76.461	Sphenodon_punctatus
ENSPSIG00000006660	SMG6	81	52.368	ENSSPAG00000015633	smg6	67	52.369	Stegastes_partitus
ENSPSIG00000006660	SMG6	96	70.968	ENSSSCG00000017826	SMG6	95	70.889	Sus_scrofa
ENSPSIG00000006660	SMG6	96	78.532	ENSTGUG00000005836	SMG6	88	78.532	Taeniopygia_guttata
ENSPSIG00000006660	SMG6	85	51.055	ENSTRUG00000000358	smg6	78	50.924	Takifugu_rubripes
ENSPSIG00000006660	SMG6	98	46.672	ENSTNIG00000016164	smg6	90	46.964	Tetraodon_nigroviridis
ENSPSIG00000006660	SMG6	96	68.392	ENSTBEG00000011424	SMG6	89	68.314	Tupaia_belangeri
ENSPSIG00000006660	SMG6	86	82.576	ENSTTRG00000001175	SMG6	79	82.576	Tursiops_truncatus
ENSPSIG00000006660	SMG6	96	71.137	ENSUAMG00000025152	SMG6	90	71.059	Ursus_americanus
ENSPSIG00000006660	SMG6	96	71.305	ENSUMAG00000009306	SMG6	90	71.226	Ursus_maritimus
ENSPSIG00000006660	SMG6	88	70.561	ENSVPAG00000000225	SMG6	84	70.462	Vicugna_pacos
ENSPSIG00000006660	SMG6	96	71.104	ENSVVUG00000021727	SMG6	90	70.149	Vulpes_vulpes
ENSPSIG00000006660	SMG6	96	55.427	ENSXETG00000023799	SMG6	90	55.104	Xenopus_tropicalis
ENSPSIG00000006660	SMG6	83	52.063	ENSXCOG00000009867	smg6	68	52.318	Xiphophorus_couchianus
ENSPSIG00000006660	SMG6	82	52.035	ENSXMAG00000010321	smg6	67	52.302	Xiphophorus_maculatus