EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000008238 (Gene tree)
Gene ID: 102453174
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 4-like
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 12682 bases
Position: chrJH210676.1:2519301-2531982
Accession: 102453174
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000009041	RRM_1	PF00076.22	5.6e-34	1	2
ENSPSIP00000009041	RRM_1	PF00076.22	5.6e-34	2	2
ENSPSIP00000009041	RRM_3	PF08777.11	5e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000009087	-	768	XM_006130281	ENSPSIP00000009041	256 (aa)	XP_006130343	K7FLY1

Gene Model

Click here to download ENSPSIG00000008238's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03040	Spliceosome	KEGG
pss05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000008238's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000008238	-	74	39.691	ENSPSIG00000009000	-	77	38.835
ENSPSIG00000008238	-	68	70.000	ENSPSIG00000012522	SRSF5	67	70.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000008238	-	69	76.216	ENSAPOG00000017395	srsf5a	62	80.000	Acanthochromis_polyacanthus
ENSPSIG00000008238	-	69	76.064	ENSACIG00000011892	srsf5a	96	75.556	Amphilophus_citrinellus
ENSPSIG00000008238	-	87	74.459	ENSAOCG00000014967	srsf5a	62	80.435	Amphiprion_ocellaris
ENSPSIG00000008238	-	87	74.459	ENSAPEG00000009297	srsf5a	62	80.435	Amphiprion_percula
ENSPSIG00000008238	-	69	77.128	ENSATEG00000000198	srsf5a	65	79.787	Anabas_testudineus
ENSPSIG00000008238	-	89	86.463	ENSAPLG00000002469	-	100	84.109	Anas_platyrhynchos
ENSPSIG00000008238	-	69	83.799	ENSACAG00000029015	-	68	86.034	Anolis_carolinensis
ENSPSIG00000008238	-	69	72.917	ENSACLG00000027166	srsf5a	65	76.042	Astatotilapia_calliptera
ENSPSIG00000008238	-	69	77.957	ENSAMXG00000030476	srsf5a	67	80.108	Astyanax_mexicanus
ENSPSIG00000008238	-	89	87.931	ENSCPBG00000021518	-	100	90.000	Chrysemys_picta_bellii
ENSPSIG00000008238	-	69	55.051	ENSCSAVG00000011376	-	78	56.345	Ciona_savignyi
ENSPSIG00000008238	-	69	73.196	ENSCSEG00000008109	srsf5a	62	76.804	Cynoglossus_semilaevis
ENSPSIG00000008238	-	67	67.725	ENSCVAG00000016982	srsf5a	96	67.910	Cyprinodon_variegatus
ENSPSIG00000008238	-	70	77.540	ENSDARG00000029818	srsf5a	100	76.119	Danio_rerio
ENSPSIG00000008238	-	69	72.680	ENSELUG00000020439	srsf5a	62	76.289	Esox_lucius
ENSPSIG00000008238	-	69	89.266	ENSFALG00000005098	-	91	77.075	Ficedula_albicollis
ENSPSIG00000008238	-	69	71.751	ENSFHEG00000003955	srsf5a	97	65.068	Fundulus_heteroclitus
ENSPSIG00000008238	-	69	79.213	ENSGMOG00000000869	srsf5a	94	79.213	Gadus_morhua
ENSPSIG00000008238	-	69	89.266	ENSGALG00000033259	SRSF5A	63	89.266	Gallus_gallus
ENSPSIG00000008238	-	69	71.186	ENSGAFG00000018237	srsf5a	54	71.186	Gambusia_affinis
ENSPSIG00000008238	-	69	79.888	ENSGACG00000011761	srsf5a	70	80.447	Gasterosteus_aculeatus
ENSPSIG00000008238	-	89	87.500	ENSGAGG00000007312	-	100	89.615	Gopherus_agassizii
ENSPSIG00000008238	-	69	73.298	ENSHBUG00000014048	srsf5a	64	76.440	Haplochromis_burtoni
ENSPSIG00000008238	-	69	77.540	ENSHCOG00000017557	srsf5a	62	78.075	Hippocampus_comes
ENSPSIG00000008238	-	99	61.702	ENSIPUG00000003439	srsf5a	69	76.440	Ictalurus_punctatus
ENSPSIG00000008238	-	69	70.370	ENSKMAG00000014937	srsf5a	58	71.579	Kryptolebias_marmoratus
ENSPSIG00000008238	-	69	69.898	ENSLBEG00000017153	srsf5a	74	72.449	Labrus_bergylta
ENSPSIG00000008238	-	69	81.768	ENSLACG00000017874	-	70	82.873	Latimeria_chalumnae
ENSPSIG00000008238	-	69	79.570	ENSLOCG00000014075	srsf5a	61	82.258	Lepisosteus_oculatus
ENSPSIG00000008238	-	69	80.220	ENSMAMG00000000192	srsf5a	65	81.319	Mastacembelus_armatus
ENSPSIG00000008238	-	69	73.298	ENSMZEG00005010485	srsf5a	64	76.440	Maylandia_zebra
ENSPSIG00000008238	-	89	79.918	ENSMGAG00000011888	-	96	89.308	Meleagris_gallopavo
ENSPSIG00000008238	-	69	77.901	ENSMMOG00000009793	srsf5a	61	81.768	Mola_mola
ENSPSIG00000008238	-	69	77.966	ENSMALG00000021194	srsf5a	63	78.531	Monopterus_albus
ENSPSIG00000008238	-	69	73.684	ENSNBRG00000000771	srsf5a	64	76.842	Neolamprologus_brichardi
ENSPSIG00000008238	-	69	73.684	ENSONIG00000019583	srsf5a	64	76.842	Oreochromis_niloticus
ENSPSIG00000008238	-	69	73.545	ENSORLG00000009268	srsf5a	67	78.571	Oryzias_latipes
ENSPSIG00000008238	-	69	73.545	ENSORLG00020003281	srsf5	67	78.571	Oryzias_latipes_hni
ENSPSIG00000008238	-	69	73.545	ENSORLG00015023075	srsf5	67	78.571	Oryzias_latipes_hsok
ENSPSIG00000008238	-	69	75.138	ENSOMEG00000000628	srsf5a	66	79.558	Oryzias_melastigma
ENSPSIG00000008238	-	69	77.540	ENSPKIG00000002054	srsf5a	68	79.679	Paramormyrops_kingsleyae
ENSPSIG00000008238	-	70	74.194	ENSPMGG00000020125	srsf5a	55	74.595	Periophthalmus_magnuspinnatus
ENSPSIG00000008238	-	69	69.271	ENSPFOG00000022993	srsf5a	77	67.886	Poecilia_formosa
ENSPSIG00000008238	-	68	69.110	ENSPLAG00000005508	srsf5a	76	67.755	Poecilia_latipinna
ENSPSIG00000008238	-	69	69.271	ENSPMEG00000016339	srsf5a	77	67.886	Poecilia_mexicana
ENSPSIG00000008238	-	69	68.394	ENSPREG00000018091	srsf5a	78	67.611	Poecilia_reticulata
ENSPSIG00000008238	-	69	73.298	ENSPNYG00000021245	srsf5a	64	76.440	Pundamilia_nyererei
ENSPSIG00000008238	-	69	76.757	ENSPNAG00000021333	srsf5a	99	68.817	Pygocentrus_nattereri
ENSPSIG00000008238	-	69	78.610	ENSSFOG00015008377	srsf5	66	80.749	Scleropages_formosus
ENSPSIG00000008238	-	69	70.149	ENSSMAG00000010899	srsf5a	66	72.637	Scophthalmus_maximus
ENSPSIG00000008238	-	69	78.142	ENSSDUG00000006103	srsf5a	63	80.874	Seriola_dumerili
ENSPSIG00000008238	-	69	78.142	ENSSLDG00000004146	srsf5a	63	80.874	Seriola_lalandi_dorsalis
ENSPSIG00000008238	-	95	81.048	ENSSPUG00000002052	-	100	83.525	Sphenodon_punctatus
ENSPSIG00000008238	-	69	75.543	ENSSPAG00000002821	srsf5a	63	80.435	Stegastes_partitus
ENSPSIG00000008238	-	69	89.266	ENSTGUG00000011492	-	68	89.266	Taeniopygia_guttata
ENSPSIG00000008238	-	69	73.057	ENSTRUG00000022908	srsf5a	65	76.166	Takifugu_rubripes
ENSPSIG00000008238	-	100	70.741	ENSXETG00000017937	srsf5a	89	76.891	Xenopus_tropicalis
ENSPSIG00000008238	-	93	69.200	ENSXCOG00000015338	srsf5a	61	71.809	Xiphophorus_couchianus
ENSPSIG00000008238	-	69	68.041	ENSXMAG00000012823	srsf5a	61	71.134	Xiphophorus_maculatus