EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000009000 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 1920 bases
Position: chrJH224660.1:4247904-4249823
Accession: 102451404
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000009941	RRM_1	PF00076.22	3.3e-25	1	2
ENSPSIP00000009941	RRM_1	PF00076.22	3.3e-25	2	2
ENSPSIP00000009933	RRM_1	PF00076.22	1.6e-24	1	2
ENSPSIP00000009933	RRM_1	PF00076.22	1.6e-24	2	2
ENSPSIP00000009919	RRM_1	PF00076.22	3.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000009991	-	741	XM_006138615	ENSPSIP00000009941	247 (aa)	XP_006138677	K7FPI1
ENSPSIT00000009983	-	753	-	ENSPSIP00000009933	250 (aa)	-	K7FPH3
ENSPSIT00000009969	-	552	-	ENSPSIP00000009919	184 (aa)	-	K7FPF9

Gene Model

Click here to download ENSPSIG00000009000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000009000's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000009000	-	77	38.835	ENSPSIG00000008238	-	74	39.691
ENSPSIG00000009000	-	83	34.419	ENSPSIG00000012522	SRSF5	81	33.636

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000009000	-	100	92.000	ENSG00000136450	SRSF1	99	97.887	Homo_sapiens
ENSPSIG00000009000	-	72	90.226	ENSAPOG00000002748	-	78	81.347	Acanthochromis_polyacanthus
ENSPSIG00000009000	-	80	82.927	ENSAPOG00000008542	-	81	81.463	Acanthochromis_polyacanthus
ENSPSIG00000009000	-	78	93.056	ENSAMEG00000002635	SRSF1	79	87.437	Ailuropoda_melanoleuca
ENSPSIG00000009000	-	72	90.226	ENSACIG00000008091	srsf1a	83	81.865	Amphilophus_citrinellus
ENSPSIG00000009000	-	80	82.927	ENSAOCG00000000337	-	82	81.463	Amphiprion_ocellaris
ENSPSIG00000009000	-	72	90.977	ENSAOCG00000010671	-	83	82.383	Amphiprion_ocellaris
ENSPSIG00000009000	-	72	90.977	ENSAPEG00000009915	-	83	82.383	Amphiprion_percula
ENSPSIG00000009000	-	80	82.927	ENSAPEG00000023352	-	81	81.463	Amphiprion_percula
ENSPSIG00000009000	-	72	90.977	ENSATEG00000022403	-	77	82.383	Anabas_testudineus
ENSPSIG00000009000	-	82	79.024	ENSATEG00000021567	-	81	80.402	Anabas_testudineus
ENSPSIG00000009000	-	78	100.000	ENSACAG00000005542	-	79	92.857	Anolis_carolinensis
ENSPSIG00000009000	-	100	92.000	ENSANAG00000020583	-	99	78.378	Aotus_nancymaae
ENSPSIG00000009000	-	81	70.854	ENSANAG00000025417	-	75	68.878	Aotus_nancymaae
ENSPSIG00000009000	-	78	84.940	ENSAMXG00000024373	-	95	86.058	Astyanax_mexicanus
ENSPSIG00000009000	-	94	86.722	ENSAMXG00000035996	srsf1a	79	87.065	Astyanax_mexicanus
ENSPSIG00000009000	-	100	92.000	ENSBTAG00000014766	SRSF1	79	90.955	Bos_taurus
ENSPSIG00000009000	-	100	92.000	ENSCJAG00000041713	-	99	78.378	Callithrix_jacchus
ENSPSIG00000009000	-	79	85.204	ENSCJAG00000008111	-	88	84.422	Callithrix_jacchus
ENSPSIG00000009000	-	100	92.000	ENSCAFG00000017430	SRSF1	78	90.955	Canis_familiaris
ENSPSIG00000009000	-	100	92.000	ENSCAFG00020025632	-	78	90.955	Canis_lupus_dingo
ENSPSIG00000009000	-	78	97.917	ENSCHIG00000010787	SRSF1	79	90.955	Capra_hircus
ENSPSIG00000009000	-	100	92.000	ENSTSYG00000013899	-	83	98.000	Carlito_syrichta
ENSPSIG00000009000	-	100	92.000	ENSCPOG00000032681	-	79	90.955	Cavia_porcellus
ENSPSIG00000009000	-	100	92.000	ENSCCAG00000029484	-	99	78.378	Cebus_capucinus
ENSPSIG00000009000	-	100	92.000	ENSCATG00000042294	-	88	96.732	Cercocebus_atys
ENSPSIG00000009000	-	100	92.000	ENSCLAG00000014707	-	79	90.955	Chinchilla_lanigera
ENSPSIG00000009000	-	100	91.200	ENSCSAG00000005642	-	78	89.950	Chlorocebus_sabaeus
ENSPSIG00000009000	-	78	97.917	ENSCHOG00000001899	SRSF1	79	90.955	Choloepus_hoffmanni
ENSPSIG00000009000	-	100	93.200	ENSCPBG00000009851	-	79	92.462	Chrysemys_picta_bellii
ENSPSIG00000009000	-	100	92.000	ENSCANG00000029726	-	83	96.732	Colobus_angolensis_palliatus
ENSPSIG00000009000	-	100	92.000	ENSCGRG00001000670	Srsf1	78	90.955	Cricetulus_griseus_chok1gshd
ENSPSIG00000009000	-	100	92.000	ENSCGRG00000005590	Srsf1	79	90.955	Cricetulus_griseus_crigri
ENSPSIG00000009000	-	79	77.570	ENSCSEG00000009973	-	81	76.636	Cynoglossus_semilaevis
ENSPSIG00000009000	-	72	92.647	ENSCSEG00000014272	-	78	85.354	Cynoglossus_semilaevis
ENSPSIG00000009000	-	72	90.977	ENSCVAG00000018617	-	78	82.383	Cyprinodon_variegatus
ENSPSIG00000009000	-	72	91.791	ENSCVAG00000005458	-	91	81.622	Cyprinodon_variegatus
ENSPSIG00000009000	-	78	92.208	ENSDARG00000057691	srsf1a	99	87.451	Danio_rerio
ENSPSIG00000009000	-	78	98.611	ENSDARG00000017843	srsf1b	79	90.816	Danio_rerio
ENSPSIG00000009000	-	100	92.000	ENSDNOG00000011737	-	78	90.955	Dasypus_novemcinctus
ENSPSIG00000009000	-	100	92.000	ENSDORG00000015082	Srsf1	79	90.955	Dipodomys_ordii
ENSPSIG00000009000	-	100	70.500	ENSETEG00000005349	-	63	90.323	Echinops_telfairi
ENSPSIG00000009000	-	100	92.000	ENSEASG00005002922	-	78	90.955	Equus_asinus_asinus
ENSPSIG00000009000	-	78	97.917	ENSECAG00000016654	SRSF1	79	90.955	Equus_caballus
ENSPSIG00000009000	-	100	74.619	ENSEEUG00000009255	-	63	90.323	Erinaceus_europaeus
ENSPSIG00000009000	-	72	94.737	ENSELUG00000021646	srsf1a	77	84.021	Esox_lucius
ENSPSIG00000009000	-	100	92.000	ENSFCAG00000002250	-	92	90.323	Felis_catus
ENSPSIG00000009000	-	99	79.839	ENSFALG00000005062	-	97	79.839	Ficedula_albicollis
ENSPSIG00000009000	-	100	92.000	ENSFDAG00000010646	-	79	90.955	Fukomys_damarensis
ENSPSIG00000009000	-	72	90.977	ENSFHEG00000003174	srsf1a	83	82.383	Fundulus_heteroclitus
ENSPSIG00000009000	-	75	89.130	ENSGMOG00000014787	-	80	80.829	Gadus_morhua
ENSPSIG00000009000	-	78	100.000	ENSGALG00000005525	SRSF1	79	92.462	Gallus_gallus
ENSPSIG00000009000	-	80	79.899	ENSGACG00000020621	srsf1b	80	77.889	Gasterosteus_aculeatus
ENSPSIG00000009000	-	100	93.200	ENSGAGG00000022965	-	78	92.462	Gopherus_agassizii
ENSPSIG00000009000	-	100	92.000	ENSGGOG00000004386	SRSF1	88	96.732	Gorilla_gorilla
ENSPSIG00000009000	-	72	90.226	ENSHBUG00000016788	srsf1a	80	81.865	Haplochromis_burtoni
ENSPSIG00000009000	-	78	97.917	ENSHGLG00000000669	-	76	89.157	Heterocephalus_glaber_female
ENSPSIG00000009000	-	78	97.917	ENSHGLG00000000600	-	76	89.157	Heterocephalus_glaber_female
ENSPSIG00000009000	-	100	92.000	ENSHGLG00100016906	-	79	90.955	Heterocephalus_glaber_male
ENSPSIG00000009000	-	78	79.695	ENSHCOG00000018918	srsf1a	77	80.905	Hippocampus_comes
ENSPSIG00000009000	-	78	97.917	ENSIPUG00000008750	srsf1b	80	86.432	Ictalurus_punctatus
ENSPSIG00000009000	-	94	86.307	ENSIPUG00000017039	srsf1a	79	87.562	Ictalurus_punctatus
ENSPSIG00000009000	-	100	92.000	ENSSTOG00000000243	-	92	90.323	Ictidomys_tridecemlineatus
ENSPSIG00000009000	-	100	92.000	ENSJJAG00000000102	-	79	90.955	Jaculus_jaculus
ENSPSIG00000009000	-	52	80.620	ENSJJAG00000014464	-	95	76.744	Jaculus_jaculus
ENSPSIG00000009000	-	72	90.977	ENSKMAG00000019232	srsf1a	78	80.829	Kryptolebias_marmoratus
ENSPSIG00000009000	-	72	92.481	ENSLBEG00000020864	-	83	83.420	Labrus_bergylta
ENSPSIG00000009000	-	72	89.706	ENSLBEG00000015294	-	80	81.000	Labrus_bergylta
ENSPSIG00000009000	-	78	88.776	ENSLACG00000014160	srsf1a	73	87.245	Latimeria_chalumnae
ENSPSIG00000009000	-	78	98.611	ENSLOCG00000005994	srsf1a	79	87.940	Lepisosteus_oculatus
ENSPSIG00000009000	-	100	86.400	ENSLAFG00000025743	SRSF1	100	86.400	Loxodonta_africana
ENSPSIG00000009000	-	100	92.000	ENSMFAG00000040003	-	88	96.732	Macaca_fascicularis
ENSPSIG00000009000	-	100	92.000	ENSMMUG00000004725	SRSF1	99	78.378	Macaca_mulatta
ENSPSIG00000009000	-	100	89.516	ENSMMUG00000003260	-	95	88.265	Macaca_mulatta
ENSPSIG00000009000	-	100	89.516	ENSMNEG00000015983	-	78	88.325	Macaca_nemestrina
ENSPSIG00000009000	-	100	92.000	ENSMNEG00000027680	-	88	96.732	Macaca_nemestrina
ENSPSIG00000009000	-	100	86.000	ENSMLEG00000015243	-	77	83.920	Mandrillus_leucophaeus
ENSPSIG00000009000	-	78	97.917	ENSMLEG00000040509	SRSF1	79	90.955	Mandrillus_leucophaeus
ENSPSIG00000009000	-	72	90.977	ENSMAMG00000018454	-	78	82.383	Mastacembelus_armatus
ENSPSIG00000009000	-	80	81.407	ENSMAMG00000019687	-	80	78.894	Mastacembelus_armatus
ENSPSIG00000009000	-	80	86.935	ENSMAMG00000019691	-	81	83.920	Mastacembelus_armatus
ENSPSIG00000009000	-	55	95.098	ENSMGAG00000008204	-	93	92.157	Meleagris_gallopavo
ENSPSIG00000009000	-	100	92.000	ENSMAUG00000021845	Srsf1	79	90.955	Mesocricetus_auratus
ENSPSIG00000009000	-	100	92.000	ENSMICG00000013639	-	88	96.732	Microcebus_murinus
ENSPSIG00000009000	-	100	92.000	ENSMOCG00000001996	Srsf1	79	90.955	Microtus_ochrogaster
ENSPSIG00000009000	-	72	91.729	ENSMMOG00000014354	srsf1a	83	82.902	Mola_mola
ENSPSIG00000009000	-	100	73.980	ENSMODG00000014781	-	63	89.305	Monodelphis_domestica
ENSPSIG00000009000	-	72	90.977	ENSMALG00000017129	-	75	80.829	Monopterus_albus
ENSPSIG00000009000	-	82	74.757	ENSMALG00000007763	-	79	74.372	Monopterus_albus
ENSPSIG00000009000	-	100	92.000	MGP_CAROLIEiJ_G0016943	Srsf1	89	96.774	Mus_caroli
ENSPSIG00000009000	-	100	92.000	ENSMUSG00000018379	Srsf1	88	96.774	Mus_musculus
ENSPSIG00000009000	-	100	92.000	MGP_PahariEiJ_G0018074	Srsf1	89	96.774	Mus_pahari
ENSPSIG00000009000	-	100	92.000	MGP_SPRETEiJ_G0017790	Srsf1	89	96.774	Mus_spretus
ENSPSIG00000009000	-	78	97.917	ENSMPUG00000015369	SRSF1	79	90.955	Mustela_putorius_furo
ENSPSIG00000009000	-	78	97.917	ENSMLUG00000011040	SRSF1	79	90.955	Myotis_lucifugus
ENSPSIG00000009000	-	82	83.415	ENSMLUG00000023995	-	79	82.915	Myotis_lucifugus
ENSPSIG00000009000	-	78	97.917	ENSNGAG00000011395	Srsf1	79	90.955	Nannospalax_galili
ENSPSIG00000009000	-	100	75.600	ENSNBRG00000008041	srsf1b	80	75.377	Neolamprologus_brichardi
ENSPSIG00000009000	-	100	92.000	ENSNLEG00000008088	-	88	96.732	Nomascus_leucogenys
ENSPSIG00000009000	-	51	80.620	ENSMEUG00000002783	-	100	85.271	Notamacropus_eugenii
ENSPSIG00000009000	-	78	97.902	ENSOPRG00000001234	-	100	98.361	Ochotona_princeps
ENSPSIG00000009000	-	99	91.968	ENSODEG00000011481	-	79	90.452	Octodon_degus
ENSPSIG00000009000	-	72	90.226	ENSONIG00000013160	-	77	81.865	Oreochromis_niloticus
ENSPSIG00000009000	-	96	84.937	ENSONIG00000004860	-	81	83.920	Oreochromis_niloticus
ENSPSIG00000009000	-	100	66.142	ENSOCUG00000010894	-	77	66.497	Oryctolagus_cuniculus
ENSPSIG00000009000	-	72	90.977	ENSORLG00000004580	srsf1a	78	82.383	Oryzias_latipes
ENSPSIG00000009000	-	72	90.977	ENSORLG00020009456	srsf1a	83	82.383	Oryzias_latipes_hni
ENSPSIG00000009000	-	72	90.977	ENSORLG00015014384	srsf1a	83	82.383	Oryzias_latipes_hsok
ENSPSIG00000009000	-	72	91.729	ENSOMEG00000004106	srsf1a	71	79.545	Oryzias_melastigma
ENSPSIG00000009000	-	100	92.391	ENSOGAG00000025950	-	79	90.955	Otolemur_garnettii
ENSPSIG00000009000	-	100	88.664	ENSOARG00000008323	SRSF1	100	88.664	Ovis_aries
ENSPSIG00000009000	-	100	92.000	ENSPPAG00000043403	-	88	96.732	Pan_paniscus
ENSPSIG00000009000	-	100	92.000	ENSPPRG00000004238	-	92	90.323	Panthera_pardus
ENSPSIG00000009000	-	100	92.000	ENSPTRG00000049077	SRSF1	88	96.732	Pan_troglodytes
ENSPSIG00000009000	-	100	92.000	ENSPANG00000022305	-	88	96.732	Papio_anubis
ENSPSIG00000009000	-	100	75.304	ENSPANG00000030275	-	54	95.604	Papio_anubis
ENSPSIG00000009000	-	78	96.528	ENSPKIG00000007204	srsf1a	83	86.154	Paramormyrops_kingsleyae
ENSPSIG00000009000	-	78	97.222	ENSPKIG00000012857	srsf1b	80	86.432	Paramormyrops_kingsleyae
ENSPSIG00000009000	-	96	78.838	ENSPMGG00000005467	-	78	76.923	Periophthalmus_magnuspinnatus
ENSPSIG00000009000	-	78	81.818	ENSPMGG00000013112	-	79	83.838	Periophthalmus_magnuspinnatus
ENSPSIG00000009000	-	100	92.000	ENSPEMG00000021416	Srsf1	79	90.955	Peromyscus_maniculatus_bairdii
ENSPSIG00000009000	-	78	97.931	ENSPCIG00000006076	-	80	90.000	Phascolarctos_cinereus
ENSPSIG00000009000	-	74	91.971	ENSPFOG00000018325	-	70	82.143	Poecilia_formosa
ENSPSIG00000009000	-	74	91.971	ENSPLAG00000008416	srsf1b	79	82.143	Poecilia_latipinna
ENSPSIG00000009000	-	50	77.600	ENSPMEG00000014312	-	98	76.423	Poecilia_mexicana
ENSPSIG00000009000	-	50	77.600	ENSPMEG00000020607	-	98	76.423	Poecilia_mexicana
ENSPSIG00000009000	-	74	91.971	ENSPMEG00000002388	-	79	82.143	Poecilia_mexicana
ENSPSIG00000009000	-	72	90.977	ENSPREG00000009667	srsf1a	78	82.383	Poecilia_reticulata
ENSPSIG00000009000	-	100	92.000	ENSPPYG00000008240	SRSF1	79	90.955	Pongo_abelii
ENSPSIG00000009000	-	78	97.917	ENSPCAG00000005199	SRSF1	79	90.955	Procavia_capensis
ENSPSIG00000009000	-	80	69.802	ENSPCOG00000025736	-	95	69.388	Propithecus_coquereli
ENSPSIG00000009000	-	100	92.000	ENSPCOG00000023654	-	88	96.732	Propithecus_coquereli
ENSPSIG00000009000	-	68	100.000	ENSPVAG00000000519	-	68	100.000	Pteropus_vampyrus
ENSPSIG00000009000	-	78	94.444	ENSPNAG00000014601	srsf1b	80	83.920	Pygocentrus_nattereri
ENSPSIG00000009000	-	94	88.136	ENSPNAG00000022241	srsf1a	78	84.184	Pygocentrus_nattereri
ENSPSIG00000009000	-	78	97.917	ENSRNOG00000050323	Srsf1	79	90.955	Rattus_norvegicus
ENSPSIG00000009000	-	100	92.000	ENSRBIG00000034445	-	88	96.732	Rhinopithecus_bieti
ENSPSIG00000009000	-	100	92.000	ENSRROG00000041506	-	88	96.732	Rhinopithecus_roxellana
ENSPSIG00000009000	-	100	92.000	ENSSBOG00000025377	-	99	78.378	Saimiri_boliviensis_boliviensis
ENSPSIG00000009000	-	78	97.931	ENSSHAG00000002552	-	80	90.000	Sarcophilus_harrisii
ENSPSIG00000009000	-	78	97.222	ENSSFOG00015004800	srsf1a	79	86.869	Scleropages_formosus
ENSPSIG00000009000	-	72	91.729	ENSSMAG00000007018	-	78	82.383	Scophthalmus_maximus
ENSPSIG00000009000	-	94	81.818	ENSSMAG00000009719	-	80	80.097	Scophthalmus_maximus
ENSPSIG00000009000	-	100	73.307	ENSSDUG00000003929	-	84	78.500	Seriola_dumerili
ENSPSIG00000009000	-	72	92.481	ENSSDUG00000011303	-	83	83.420	Seriola_dumerili
ENSPSIG00000009000	-	95	71.429	ENSSLDG00000016895	-	78	76.720	Seriola_lalandi_dorsalis
ENSPSIG00000009000	-	72	92.481	ENSSLDG00000010543	-	78	83.420	Seriola_lalandi_dorsalis
ENSPSIG00000009000	-	80	76.500	ENSSLDG00000016868	-	78	76.500	Seriola_lalandi_dorsalis
ENSPSIG00000009000	-	100	74.112	ENSSARG00000010949	-	63	90.323	Sorex_araneus
ENSPSIG00000009000	-	100	93.200	ENSSPUG00000000804	-	93	91.935	Sphenodon_punctatus
ENSPSIG00000009000	-	72	91.729	ENSSPAG00000022562	-	78	82.902	Stegastes_partitus
ENSPSIG00000009000	-	80	80.095	ENSSPAG00000014152	-	81	79.147	Stegastes_partitus
ENSPSIG00000009000	-	100	92.000	ENSSSCG00000017626	-	79	90.955	Sus_scrofa
ENSPSIG00000009000	-	78	100.000	ENSTGUG00000008416	-	100	100.000	Taeniopygia_guttata
ENSPSIG00000009000	-	72	90.226	ENSTRUG00000003691	srsf1a	78	81.865	Takifugu_rubripes
ENSPSIG00000009000	-	72	90.226	ENSTNIG00000016223	srsf1a	77	81.865	Tetraodon_nigroviridis
ENSPSIG00000009000	-	100	78.010	ENSTBEG00000015378	-	63	89.785	Tupaia_belangeri
ENSPSIG00000009000	-	78	97.902	ENSTTRG00000007310	SRSF1	100	98.361	Tursiops_truncatus
ENSPSIG00000009000	-	78	97.917	ENSUAMG00000009858	SRSF1	79	90.955	Ursus_americanus
ENSPSIG00000009000	-	100	92.000	ENSUMAG00000000455	-	78	90.955	Ursus_maritimus
ENSPSIG00000009000	-	78	97.222	ENSVPAG00000010094	SRSF1	79	90.452	Vicugna_pacos
ENSPSIG00000009000	-	100	92.000	ENSVVUG00000011882	-	78	90.955	Vulpes_vulpes
ENSPSIG00000009000	-	100	90.400	ENSXETG00000008954	srsf1	100	86.245	Xenopus_tropicalis
ENSPSIG00000009000	-	72	90.977	ENSXMAG00000011766	srsf1a	78	82.383	Xiphophorus_maculatus