EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000009491 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 13132 bases
Position: chrJH211369.1:1643499-1656630
Accession: 102450038
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000010461	ResIII	PF04851.15	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000010514	UPF1-201	2280	XM_006132319	ENSPSIP00000010461	758 (aa)	XP_006132381	K7FR01

Gene Model

Click here to download ENSPSIG00000009491's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000009491's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000009491	UPF1	100	97.908	ENSG00000005007	UPF1	68	97.908	Homo_sapiens
ENSPSIG00000009491	UPF1	100	93.481	ENSAPOG00000010916	-	70	93.611	Acanthochromis_polyacanthus
ENSPSIG00000009491	UPF1	100	91.558	ENSAPOG00000023773	upf1	70	91.805	Acanthochromis_polyacanthus
ENSPSIG00000009491	UPF1	100	98.039	ENSAMEG00000011474	UPF1	68	98.039	Ailuropoda_melanoleuca
ENSPSIG00000009491	UPF1	100	91.765	ENSACIG00000019949	upf1	70	91.818	Amphilophus_citrinellus
ENSPSIG00000009491	UPF1	100	92.810	ENSACIG00000010985	-	75	92.941	Amphilophus_citrinellus
ENSPSIG00000009491	UPF1	100	93.481	ENSAOCG00000006352	-	74	89.700	Amphiprion_ocellaris
ENSPSIG00000009491	UPF1	100	90.850	ENSAOCG00000018519	upf1	70	91.805	Amphiprion_ocellaris
ENSPSIG00000009491	UPF1	100	90.850	ENSAPEG00000016344	upf1	70	91.805	Amphiprion_percula
ENSPSIG00000009491	UPF1	100	93.481	ENSAPEG00000006292	-	74	89.700	Amphiprion_percula
ENSPSIG00000009491	UPF1	100	89.911	ENSATEG00000017867	upf1	70	91.315	Anabas_testudineus
ENSPSIG00000009491	UPF1	100	93.611	ENSATEG00000016606	-	70	93.742	Anabas_testudineus
ENSPSIG00000009491	UPF1	100	98.954	ENSAPLG00000009175	UPF1	73	98.954	Anas_platyrhynchos
ENSPSIG00000009491	UPF1	100	96.078	ENSANAG00000024107	UPF1	69	96.078	Aotus_nancymaae
ENSPSIG00000009491	UPF1	100	93.211	ENSACLG00000022630	-	70	93.211	Astatotilapia_calliptera
ENSPSIG00000009491	UPF1	100	91.503	ENSACLG00000007181	upf1	70	91.558	Astatotilapia_calliptera
ENSPSIG00000009491	UPF1	100	93.872	ENSAMXG00000042187	upf1	70	94.654	Astyanax_mexicanus
ENSPSIG00000009491	UPF1	100	98.039	ENSBTAG00000020922	UPF1	68	98.039	Bos_taurus
ENSPSIG00000009491	UPF1	74	59.511	WBGene00004880	smg-2	53	59.511	Caenorhabditis_elegans
ENSPSIG00000009491	UPF1	100	97.908	ENSCJAG00000019627	UPF1	68	97.908	Callithrix_jacchus
ENSPSIG00000009491	UPF1	100	98.039	ENSCAFG00000014578	UPF1	68	98.039	Canis_familiaris
ENSPSIG00000009491	UPF1	100	98.039	ENSCAFG00020012347	UPF1	68	98.039	Canis_lupus_dingo
ENSPSIG00000009491	UPF1	100	98.039	ENSCHIG00000011018	UPF1	69	98.039	Capra_hircus
ENSPSIG00000009491	UPF1	100	97.647	ENSTSYG00000008877	UPF1	71	97.647	Carlito_syrichta
ENSPSIG00000009491	UPF1	100	97.647	ENSCAPG00000005758	UPF1	69	97.647	Cavia_aperea
ENSPSIG00000009491	UPF1	100	97.647	ENSCPOG00000025463	UPF1	69	97.647	Cavia_porcellus
ENSPSIG00000009491	UPF1	100	97.908	ENSCCAG00000032175	UPF1	68	97.908	Cebus_capucinus
ENSPSIG00000009491	UPF1	100	97.908	ENSCATG00000040306	UPF1	71	97.908	Cercocebus_atys
ENSPSIG00000009491	UPF1	100	97.908	ENSCLAG00000004037	UPF1	73	97.908	Chinchilla_lanigera
ENSPSIG00000009491	UPF1	100	97.908	ENSCSAG00000005276	UPF1	68	97.908	Chlorocebus_sabaeus
ENSPSIG00000009491	UPF1	100	98.307	ENSCPBG00000012513	UPF1	69	98.307	Chrysemys_picta_bellii
ENSPSIG00000009491	UPF1	68	83.784	ENSCING00000021399	-	62	83.784	Ciona_intestinalis
ENSPSIG00000009491	UPF1	100	72.892	ENSCSAVG00000006533	-	69	72.892	Ciona_savignyi
ENSPSIG00000009491	UPF1	100	97.908	ENSCANG00000029819	UPF1	71	97.908	Colobus_angolensis_palliatus
ENSPSIG00000009491	UPF1	100	97.255	ENSCGRG00001021067	Upf1	69	97.255	Cricetulus_griseus_chok1gshd
ENSPSIG00000009491	UPF1	100	97.255	ENSCGRG00000013480	Upf1	71	97.255	Cricetulus_griseus_crigri
ENSPSIG00000009491	UPF1	100	93.603	ENSCSEG00000016159	-	70	93.603	Cynoglossus_semilaevis
ENSPSIG00000009491	UPF1	100	85.007	ENSCSEG00000017239	upf1	69	85.398	Cynoglossus_semilaevis
ENSPSIG00000009491	UPF1	100	93.481	ENSCVAG00000010561	upf1	70	93.481	Cyprinodon_variegatus
ENSPSIG00000009491	UPF1	100	93.872	ENSDARG00000016302	upf1	70	94.654	Danio_rerio
ENSPSIG00000009491	UPF1	100	93.995	ENSDORG00000009984	Upf1	69	93.995	Dipodomys_ordii
ENSPSIG00000009491	UPF1	78	73.849	FBgn0030354	Upf1	56	69.242	Drosophila_melanogaster
ENSPSIG00000009491	UPF1	100	97.908	ENSEASG00005006549	UPF1	69	97.908	Equus_asinus_asinus
ENSPSIG00000009491	UPF1	100	97.908	ENSECAG00000010639	UPF1	69	97.908	Equus_caballus
ENSPSIG00000009491	UPF1	100	92.885	ENSELUG00000012916	-	70	92.894	Esox_lucius
ENSPSIG00000009491	UPF1	100	90.285	ENSELUG00000020917	upf1	70	90.674	Esox_lucius
ENSPSIG00000009491	UPF1	100	98.039	ENSFCAG00000009757	UPF1	68	98.039	Felis_catus
ENSPSIG00000009491	UPF1	100	98.825	ENSFALG00000009312	UPF1	70	98.825	Ficedula_albicollis
ENSPSIG00000009491	UPF1	100	97.778	ENSFDAG00000014816	UPF1	73	97.778	Fukomys_damarensis
ENSPSIG00000009491	UPF1	88	95.122	ENSFHEG00000016276	-	68	95.122	Fundulus_heteroclitus
ENSPSIG00000009491	UPF1	100	89.161	ENSFHEG00000006428	upf1	70	89.161	Fundulus_heteroclitus
ENSPSIG00000009491	UPF1	100	92.689	ENSGMOG00000007541	upf1	69	93.473	Gadus_morhua
ENSPSIG00000009491	UPF1	100	98.954	ENSGALG00000003220	UPF1	68	98.954	Gallus_gallus
ENSPSIG00000009491	UPF1	100	93.211	ENSGAFG00000004831	upf1	70	93.211	Gambusia_affinis
ENSPSIG00000009491	UPF1	79	94.435	ENSGAFG00000015443	-	75	94.435	Gambusia_affinis
ENSPSIG00000009491	UPF1	100	98.562	ENSGAGG00000022217	UPF1	69	98.562	Gopherus_agassizii
ENSPSIG00000009491	UPF1	100	97.908	ENSGGOG00000002608	UPF1	73	97.908	Gorilla_gorilla
ENSPSIG00000009491	UPF1	85	96.655	ENSHBUG00000014694	upf1	71	96.655	Haplochromis_burtoni
ENSPSIG00000009491	UPF1	81	100.000	ENSHBUG00000008939	upf1	62	100.000	Haplochromis_burtoni
ENSPSIG00000009491	UPF1	100	97.516	ENSHGLG00000010900	UPF1	68	97.516	Heterocephalus_glaber_female
ENSPSIG00000009491	UPF1	100	96.966	ENSHGLG00100005904	UPF1	70	96.966	Heterocephalus_glaber_male
ENSPSIG00000009491	UPF1	100	92.167	ENSHCOG00000008918	upf1	75	91.721	Hippocampus_comes
ENSPSIG00000009491	UPF1	100	94.133	ENSIPUG00000005108	UPF1	70	94.785	Ictalurus_punctatus
ENSPSIG00000009491	UPF1	100	97.908	ENSSTOG00000009196	UPF1	68	97.908	Ictidomys_tridecemlineatus
ENSPSIG00000009491	UPF1	100	96.993	ENSJJAG00000023151	Upf1	68	96.993	Jaculus_jaculus
ENSPSIG00000009491	UPF1	100	93.481	ENSKMAG00000004962	upf1	70	93.481	Kryptolebias_marmoratus
ENSPSIG00000009491	UPF1	100	93.351	ENSLBEG00000027848	-	70	93.481	Labrus_bergylta
ENSPSIG00000009491	UPF1	100	89.501	ENSLBEG00000014862	upf1	70	91.421	Labrus_bergylta
ENSPSIG00000009491	UPF1	91	96.700	ENSLACG00000008482	UPF1	100	96.700	Latimeria_chalumnae
ENSPSIG00000009491	UPF1	100	96.606	ENSLOCG00000002072	upf1	70	96.606	Lepisosteus_oculatus
ENSPSIG00000009491	UPF1	100	97.255	ENSLAFG00000014963	UPF1	68	97.255	Loxodonta_africana
ENSPSIG00000009491	UPF1	100	97.908	ENSMFAG00000037748	UPF1	68	97.908	Macaca_fascicularis
ENSPSIG00000009491	UPF1	100	97.908	ENSMMUG00000023286	UPF1	68	97.908	Macaca_mulatta
ENSPSIG00000009491	UPF1	100	97.908	ENSMNEG00000000046	UPF1	68	97.908	Macaca_nemestrina
ENSPSIG00000009491	UPF1	100	97.908	ENSMLEG00000028404	UPF1	73	97.908	Mandrillus_leucophaeus
ENSPSIG00000009491	UPF1	100	92.438	ENSMAMG00000006231	-	70	93.220	Mastacembelus_armatus
ENSPSIG00000009491	UPF1	100	89.655	ENSMAMG00000006229	upf1	70	91.315	Mastacembelus_armatus
ENSPSIG00000009491	UPF1	100	89.413	ENSMZEG00005003489	upf1	70	91.260	Maylandia_zebra
ENSPSIG00000009491	UPF1	100	93.211	ENSMZEG00005016386	-	70	93.211	Maylandia_zebra
ENSPSIG00000009491	UPF1	100	98.303	ENSMGAG00000004745	UPF1	73	98.303	Meleagris_gallopavo
ENSPSIG00000009491	UPF1	100	97.255	ENSMAUG00000011398	Upf1	69	97.255	Mesocricetus_auratus
ENSPSIG00000009491	UPF1	100	97.778	ENSMICG00000001659	UPF1	68	97.778	Microcebus_murinus
ENSPSIG00000009491	UPF1	100	97.255	ENSMOCG00000005699	Upf1	68	97.255	Microtus_ochrogaster
ENSPSIG00000009491	UPF1	100	91.373	ENSMMOG00000007881	upf1	70	92.167	Mola_mola
ENSPSIG00000009491	UPF1	100	91.974	ENSMMOG00000007537	-	73	92.105	Mola_mola
ENSPSIG00000009491	UPF1	100	98.693	ENSMODG00000003689	UPF1	70	98.693	Monodelphis_domestica
ENSPSIG00000009491	UPF1	100	90.980	ENSMALG00000000144	upf1	69	91.503	Monopterus_albus
ENSPSIG00000009491	UPF1	100	91.829	ENSMALG00000018100	-	70	91.958	Monopterus_albus
ENSPSIG00000009491	UPF1	100	97.124	MGP_CAROLIEiJ_G0031142	Upf1	69	97.124	Mus_caroli
ENSPSIG00000009491	UPF1	100	97.124	ENSMUSG00000058301	Upf1	69	97.124	Mus_musculus
ENSPSIG00000009491	UPF1	100	97.124	MGP_PahariEiJ_G0021607	Upf1	69	97.124	Mus_pahari
ENSPSIG00000009491	UPF1	100	97.124	MGP_SPRETEiJ_G0032260	Upf1	69	97.124	Mus_spretus
ENSPSIG00000009491	UPF1	100	98.039	ENSMPUG00000015516	UPF1	68	98.039	Mustela_putorius_furo
ENSPSIG00000009491	UPF1	100	97.778	ENSMLUG00000012122	UPF1	68	97.778	Myotis_lucifugus
ENSPSIG00000009491	UPF1	100	97.255	ENSNGAG00000024107	Upf1	68	97.255	Nannospalax_galili
ENSPSIG00000009491	UPF1	100	93.211	ENSNBRG00000022069	-	74	91.667	Neolamprologus_brichardi
ENSPSIG00000009491	UPF1	100	89.020	ENSNBRG00000000670	upf1	69	89.091	Neolamprologus_brichardi
ENSPSIG00000009491	UPF1	100	96.471	ENSNLEG00000006062	UPF1	76	96.471	Nomascus_leucogenys
ENSPSIG00000009491	UPF1	98	92.829	ENSOPRG00000014018	UPF1	72	92.829	Ochotona_princeps
ENSPSIG00000009491	UPF1	100	97.778	ENSODEG00000012426	UPF1	69	97.778	Octodon_degus
ENSPSIG00000009491	UPF1	100	93.342	ENSONIG00000012729	-	70	93.342	Oreochromis_niloticus
ENSPSIG00000009491	UPF1	100	89.796	ENSONIG00000010452	upf1	70	91.645	Oreochromis_niloticus
ENSPSIG00000009491	UPF1	100	97.523	ENSOANG00000004568	UPF1	68	97.523	Ornithorhynchus_anatinus
ENSPSIG00000009491	UPF1	100	93.611	ENSORLG00000008453	upf1	70	93.611	Oryzias_latipes
ENSPSIG00000009491	UPF1	100	93.611	ENSORLG00020014758	upf1	70	93.611	Oryzias_latipes_hni
ENSPSIG00000009491	UPF1	100	93.611	ENSORLG00015010165	upf1	70	93.611	Oryzias_latipes_hsok
ENSPSIG00000009491	UPF1	100	93.611	ENSOMEG00000003665	upf1	70	93.611	Oryzias_melastigma
ENSPSIG00000009491	UPF1	100	98.039	ENSOGAG00000012866	UPF1	68	98.039	Otolemur_garnettii
ENSPSIG00000009491	UPF1	95	97.390	ENSOARG00000010739	UPF1	67	97.390	Ovis_aries
ENSPSIG00000009491	UPF1	100	97.908	ENSPPAG00000043884	UPF1	70	97.908	Pan_paniscus
ENSPSIG00000009491	UPF1	100	98.039	ENSPPRG00000023470	UPF1	68	98.039	Panthera_pardus
ENSPSIG00000009491	UPF1	100	96.570	ENSPTIG00000010159	UPF1	73	96.570	Panthera_tigris_altaica
ENSPSIG00000009491	UPF1	100	97.908	ENSPTRG00000010721	UPF1	68	97.908	Pan_troglodytes
ENSPSIG00000009491	UPF1	100	97.908	ENSPANG00000008847	UPF1	68	97.908	Papio_anubis
ENSPSIG00000009491	UPF1	86	96.391	ENSPKIG00000006069	upf1	64	96.391	Paramormyrops_kingsleyae
ENSPSIG00000009491	UPF1	100	89.481	ENSPMGG00000017327	upf1	70	89.637	Periophthalmus_magnuspinnatus
ENSPSIG00000009491	UPF1	100	97.255	ENSPEMG00000001085	Upf1	68	97.255	Peromyscus_maniculatus_bairdii
ENSPSIG00000009491	UPF1	100	88.642	ENSPMAG00000001206	upf1	69	88.642	Petromyzon_marinus
ENSPSIG00000009491	UPF1	100	98.693	ENSPCIG00000006156	UPF1	68	98.693	Phascolarctos_cinereus
ENSPSIG00000009491	UPF1	100	93.342	ENSPLAG00000016232	-	70	93.342	Poecilia_latipinna
ENSPSIG00000009491	UPF1	100	90.464	ENSPLAG00000018155	-	70	90.464	Poecilia_latipinna
ENSPSIG00000009491	UPF1	100	93.342	ENSPMEG00000016319	-	69	93.342	Poecilia_mexicana
ENSPSIG00000009491	UPF1	100	91.016	ENSPMEG00000011443	-	70	91.016	Poecilia_mexicana
ENSPSIG00000009491	UPF1	100	90.851	ENSPREG00000009940	upf1	70	90.851	Poecilia_reticulata
ENSPSIG00000009491	UPF1	100	93.081	ENSPREG00000011247	-	70	93.081	Poecilia_reticulata
ENSPSIG00000009491	UPF1	100	90.588	ENSPPYG00000009752	UPF1	66	90.588	Pongo_abelii
ENSPSIG00000009491	UPF1	100	97.908	ENSPCOG00000023813	UPF1	68	97.908	Propithecus_coquereli
ENSPSIG00000009491	UPF1	100	93.342	ENSPNYG00000016731	-	70	93.342	Pundamilia_nyererei
ENSPSIG00000009491	UPF1	100	89.413	ENSPNYG00000003694	upf1	70	91.260	Pundamilia_nyererei
ENSPSIG00000009491	UPF1	100	94.003	ENSPNAG00000025614	upf1	70	94.785	Pygocentrus_nattereri
ENSPSIG00000009491	UPF1	100	97.124	ENSRNOG00000020134	Upf1	69	97.124	Rattus_norvegicus
ENSPSIG00000009491	UPF1	100	97.908	ENSRBIG00000013894	UPF1	82	97.908	Rhinopithecus_bieti
ENSPSIG00000009491	UPF1	100	97.908	ENSRROG00000040935	UPF1	82	97.908	Rhinopithecus_roxellana
ENSPSIG00000009491	UPF1	73	57.699	YMR080C	NAM7	58	57.699	Saccharomyces_cerevisiae
ENSPSIG00000009491	UPF1	100	97.908	ENSSBOG00000023632	UPF1	70	97.908	Saimiri_boliviensis_boliviensis
ENSPSIG00000009491	UPF1	100	98.305	ENSSHAG00000010499	UPF1	73	98.305	Sarcophilus_harrisii
ENSPSIG00000009491	UPF1	100	96.475	ENSSFOG00015021095	upf1	73	96.475	Scleropages_formosus
ENSPSIG00000009491	UPF1	100	89.117	ENSSMAG00000005055	upf1	70	90.665	Scophthalmus_maximus
ENSPSIG00000009491	UPF1	100	93.351	ENSSMAG00000021018	-	70	93.481	Scophthalmus_maximus
ENSPSIG00000009491	UPF1	100	89.783	ENSSDUG00000013320	upf1	70	91.443	Seriola_dumerili
ENSPSIG00000009491	UPF1	100	93.742	ENSSDUG00000009629	-	70	93.872	Seriola_dumerili
ENSPSIG00000009491	UPF1	100	93.742	ENSSLDG00000006878	-	70	93.872	Seriola_lalandi_dorsalis
ENSPSIG00000009491	UPF1	100	90.944	ENSSLDG00000020868	upf1	70	91.742	Seriola_lalandi_dorsalis
ENSPSIG00000009491	UPF1	100	98.824	ENSSPUG00000010538	UPF1	69	98.824	Sphenodon_punctatus
ENSPSIG00000009491	UPF1	100	93.342	ENSSPAG00000011521	-	70	93.342	Stegastes_partitus
ENSPSIG00000009491	UPF1	100	92.298	ENSSPAG00000000003	upf1	71	92.328	Stegastes_partitus
ENSPSIG00000009491	UPF1	100	97.908	ENSSSCG00000039301	UPF1	73	97.908	Sus_scrofa
ENSPSIG00000009491	UPF1	75	88.850	ENSTGUG00000001057	UPF1	61	88.850	Taeniopygia_guttata
ENSPSIG00000009491	UPF1	100	91.906	ENSTRUG00000000150	upf1	70	91.906	Takifugu_rubripes
ENSPSIG00000009491	UPF1	100	92.167	ENSTRUG00000005131	-	70	92.298	Takifugu_rubripes
ENSPSIG00000009491	UPF1	100	98.039	ENSTTRG00000011544	UPF1	69	98.039	Tursiops_truncatus
ENSPSIG00000009491	UPF1	100	98.039	ENSUAMG00000007093	UPF1	68	98.039	Ursus_americanus
ENSPSIG00000009491	UPF1	100	98.039	ENSUMAG00000006652	UPF1	79	98.039	Ursus_maritimus
ENSPSIG00000009491	UPF1	100	98.039	ENSVVUG00000007797	UPF1	68	98.039	Vulpes_vulpes
ENSPSIG00000009491	UPF1	100	80.446	ENSXETG00000013602	upf1	66	80.446	Xenopus_tropicalis
ENSPSIG00000009491	UPF1	100	93.211	ENSXCOG00000005764	-	74	93.211	Xiphophorus_couchianus
ENSPSIG00000009491	UPF1	95	90.535	ENSXCOG00000015275	-	66	90.535	Xiphophorus_couchianus
ENSPSIG00000009491	UPF1	100	90.731	ENSXMAG00000001703	-	69	90.731	Xiphophorus_maculatus
ENSPSIG00000009491	UPF1	100	93.211	ENSXMAG00000002540	-	69	93.211	Xiphophorus_maculatus