EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000009565 (Gene tree)
Gene ID: 102455356
Gene Symbol: SF3B4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 7347 bases
Position: chrJH212386.1:497524-504870
Accession: 102455356
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000010535	RRM_1	PF00076.22	4.3e-31	1	2
ENSPSIP00000010535	RRM_1	PF00076.22	4.3e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000010588	SF3B4-201	1776	XM_006134685	ENSPSIP00000010535	273 (aa)	XP_006134747	K7FR75

Gene Model

Click here to download ENSPSIG00000009565's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000009565's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000009565	SF3B4	51	35.294	ENSPSIG00000015330	ELAVL2	70	35.294
ENSPSIG00000009565	SF3B4	51	35.294	ENSPSIG00000008545	ELAVL4	69	35.294
ENSPSIG00000009565	SF3B4	51	35.294	ENSPSIG00000013736	ELAVL1	79	35.294
ENSPSIG00000009565	SF3B4	54	40.940	ENSPSIG00000016892	PABPC4	52	41.333
ENSPSIG00000009565	SF3B4	51	30.000	ENSPSIG00000006864	TRNAU1AP	52	30.000
ENSPSIG00000009565	SF3B4	79	38.926	ENSPSIG00000003719	PABPC1	57	39.333
ENSPSIG00000009565	SF3B4	65	34.615	ENSPSIG00000013289	PABPC1L	86	36.774

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000009565	SF3B4	69	97.354	ENSG00000143368	SF3B4	99	97.354	Homo_sapiens
ENSPSIG00000009565	SF3B4	68	98.378	ENSAMEG00000010073	SF3B4	66	75.714	Ailuropoda_melanoleuca
ENSPSIG00000009565	SF3B4	69	96.277	ENSACIG00000018455	sf3b4	55	97.312	Amphilophus_citrinellus
ENSPSIG00000009565	SF3B4	67	98.370	ENSAOCG00000019801	sf3b4	66	76.806	Amphiprion_ocellaris
ENSPSIG00000009565	SF3B4	67	98.370	ENSAPEG00000010365	sf3b4	66	76.806	Amphiprion_percula
ENSPSIG00000009565	SF3B4	63	100.000	ENSACAG00000010019	SF3B4	66	79.197	Anolis_carolinensis
ENSPSIG00000009565	SF3B4	71	94.330	ENSACLG00000014260	sf3b4	66	78.030	Astatotilapia_calliptera
ENSPSIG00000009565	SF3B4	68	96.757	ENSBTAG00000012793	-	58	86.017	Bos_taurus
ENSPSIG00000009565	SF3B4	68	98.378	ENSBTAG00000012495	SF3B4	66	75.714	Bos_taurus
ENSPSIG00000009565	SF3B4	50	61.029	ENSCJAG00000042351	SF3B4	66	48.052	Callithrix_jacchus
ENSPSIG00000009565	SF3B4	68	98.378	ENSCAFG00000011617	SF3B4	66	75.357	Canis_familiaris
ENSPSIG00000009565	SF3B4	68	98.378	ENSCAFG00020019775	SF3B4	66	75.357	Canis_lupus_dingo
ENSPSIG00000009565	SF3B4	86	59.191	ENSCHIG00000006654	-	67	59.438	Capra_hircus
ENSPSIG00000009565	SF3B4	68	98.378	ENSCHIG00000025663	-	66	75.714	Capra_hircus
ENSPSIG00000009565	SF3B4	83	76.800	ENSCAPG00000006451	SF3B4	50	96.648	Cavia_aperea
ENSPSIG00000009565	SF3B4	68	98.378	ENSCPOG00000008267	SF3B4	66	75.357	Cavia_porcellus
ENSPSIG00000009565	SF3B4	88	77.491	ENSCCAG00000021751	-	59	78.113	Cebus_capucinus
ENSPSIG00000009565	SF3B4	92	71.575	ENSCCAG00000019823	-	56	80.508	Cebus_capucinus
ENSPSIG00000009565	SF3B4	68	98.378	ENSCLAG00000015851	SF3B4	66	75.357	Chinchilla_lanigera
ENSPSIG00000009565	SF3B4	92	84.669	ENSCPBG00000008041	SF3B4	69	84.669	Chrysemys_picta_bellii
ENSPSIG00000009565	SF3B4	66	87.293	ENSCING00000002337	-	54	90.058	Ciona_intestinalis
ENSPSIG00000009565	SF3B4	62	89.881	ENSCSAVG00000007809	-	89	89.881	Ciona_savignyi
ENSPSIG00000009565	SF3B4	68	98.378	ENSCGRG00001003590	Sf3b4	66	75.714	Cricetulus_griseus_chok1gshd
ENSPSIG00000009565	SF3B4	68	98.378	ENSCGRG00000016914	Sf3b4	66	75.714	Cricetulus_griseus_crigri
ENSPSIG00000009565	SF3B4	68	98.387	ENSDARG00000018574	sf3b4	66	78.030	Danio_rerio
ENSPSIG00000009565	SF3B4	88	65.926	ENSDNOG00000037231	-	68	62.921	Dasypus_novemcinctus
ENSPSIG00000009565	SF3B4	68	98.378	ENSDNOG00000048908	-	67	75.714	Dasypus_novemcinctus
ENSPSIG00000009565	SF3B4	68	98.378	ENSDORG00000016366	Sf3b4	66	75.714	Dipodomys_ordii
ENSPSIG00000009565	SF3B4	68	85.946	ENSETEG00000008963	SF3B4	66	67.500	Echinops_telfairi
ENSPSIG00000009565	SF3B4	68	98.378	ENSEASG00005001477	SF3B4	66	75.714	Equus_asinus_asinus
ENSPSIG00000009565	SF3B4	68	98.378	ENSECAG00000024737	SF3B4	66	75.714	Equus_caballus
ENSPSIG00000009565	SF3B4	68	98.378	ENSFCAG00000010106	SF3B4	66	75.714	Felis_catus
ENSPSIG00000009565	SF3B4	68	98.378	ENSFDAG00000009286	SF3B4	66	75.357	Fukomys_damarensis
ENSPSIG00000009565	SF3B4	68	97.312	ENSGMOG00000002519	sf3b4	50	99.415	Gadus_morhua
ENSPSIG00000009565	SF3B4	63	100.000	ENSGALG00000013352	SF3B4	66	79.636	Gallus_gallus
ENSPSIG00000009565	SF3B4	74	85.520	ENSGAFG00000010181	sf3b4	64	79.762	Gambusia_affinis
ENSPSIG00000009565	SF3B4	92	84.669	ENSGAGG00000025055	SF3B4	60	84.669	Gopherus_agassizii
ENSPSIG00000009565	SF3B4	88	72.047	ENSGGOG00000038845	-	65	68.898	Gorilla_gorilla
ENSPSIG00000009565	SF3B4	71	94.330	ENSHBUG00000002028	sf3b4	66	78.030	Haplochromis_burtoni
ENSPSIG00000009565	SF3B4	68	98.378	ENSHGLG00000012360	SF3B4	66	75.357	Heterocephalus_glaber_female
ENSPSIG00000009565	SF3B4	67	97.283	ENSHCOG00000003014	sf3b4	65	77.395	Hippocampus_comes
ENSPSIG00000009565	SF3B4	68	98.387	ENSIPUG00000012242	Sf3b4	66	78.491	Ictalurus_punctatus
ENSPSIG00000009565	SF3B4	68	98.378	ENSSTOG00000000684	-	66	75.714	Ictidomys_tridecemlineatus
ENSPSIG00000009565	SF3B4	50	72.059	ENSJJAG00000022500	Sf3b4	91	55.411	Jaculus_jaculus
ENSPSIG00000009565	SF3B4	69	97.354	ENSLBEG00000026818	sf3b4	71	71.986	Labrus_bergylta
ENSPSIG00000009565	SF3B4	68	98.378	ENSLACG00000004436	SF3B4	53	97.382	Latimeria_chalumnae
ENSPSIG00000009565	SF3B4	88	74.648	ENSLAFG00000008531	SF3B4	56	87.288	Loxodonta_africana
ENSPSIG00000009565	SF3B4	88	72.112	ENSMFAG00000039067	-	66	70.782	Macaca_fascicularis
ENSPSIG00000009565	SF3B4	88	71.713	ENSMNEG00000031526	-	66	70.370	Macaca_nemestrina
ENSPSIG00000009565	SF3B4	71	94.330	ENSMZEG00005026741	sf3b4	66	78.030	Maylandia_zebra
ENSPSIG00000009565	SF3B4	63	100.000	ENSMGAG00000000653	SF3B4	66	79.927	Meleagris_gallopavo
ENSPSIG00000009565	SF3B4	68	98.378	ENSMAUG00000015266	Sf3b4	66	75.714	Mesocricetus_auratus
ENSPSIG00000009565	SF3B4	68	98.378	ENSMICG00000044961	SF3B4	66	75.714	Microcebus_murinus
ENSPSIG00000009565	SF3B4	63	97.661	ENSMOCG00000014155	-	69	74.368	Microtus_ochrogaster
ENSPSIG00000009565	SF3B4	68	98.378	ENSMOCG00000013658	-	66	75.714	Microtus_ochrogaster
ENSPSIG00000009565	SF3B4	68	98.378	MGP_CAROLIEiJ_G0025365	Sf3b4	66	75.714	Mus_caroli
ENSPSIG00000009565	SF3B4	68	98.378	ENSMUSG00000068856	Sf3b4	66	75.714	Mus_musculus
ENSPSIG00000009565	SF3B4	68	98.378	MGP_PahariEiJ_G0026809	Sf3b4	66	75.714	Mus_pahari
ENSPSIG00000009565	SF3B4	68	98.378	MGP_SPRETEiJ_G0026309	Sf3b4	66	75.714	Mus_spretus
ENSPSIG00000009565	SF3B4	68	98.378	ENSMPUG00000005563	SF3B4	66	75.714	Mustela_putorius_furo
ENSPSIG00000009565	SF3B4	68	98.378	ENSMLUG00000010789	SF3B4	66	75.714	Myotis_lucifugus
ENSPSIG00000009565	SF3B4	88	74.468	ENSNGAG00000016337	Sf3b4	66	75.714	Nannospalax_galili
ENSPSIG00000009565	SF3B4	69	96.825	ENSNBRG00000013865	sf3b4	66	78.409	Neolamprologus_brichardi
ENSPSIG00000009565	SF3B4	68	92.973	ENSOPRG00000010808	SF3B4	66	72.143	Ochotona_princeps
ENSPSIG00000009565	SF3B4	85	63.538	ENSODEG00000003597	-	58	72.996	Octodon_degus
ENSPSIG00000009565	SF3B4	92	57.860	ENSODEG00000008916	-	75	61.029	Octodon_degus
ENSPSIG00000009565	SF3B4	71	94.845	ENSONIG00000002730	sf3b4	66	77.652	Oreochromis_niloticus
ENSPSIG00000009565	SF3B4	57	58.599	ENSOANG00000020581	-	99	58.974	Ornithorhynchus_anatinus
ENSPSIG00000009565	SF3B4	68	98.378	ENSOCUG00000004614	SF3B4	66	75.714	Oryctolagus_cuniculus
ENSPSIG00000009565	SF3B4	68	98.378	ENSOGAG00000006265	SF3B4	66	75.714	Otolemur_garnettii
ENSPSIG00000009565	SF3B4	68	98.378	ENSOARG00000020718	-	66	75.714	Ovis_aries
ENSPSIG00000009565	SF3B4	87	64.364	ENSOARG00000007368	-	50	81.657	Ovis_aries
ENSPSIG00000009565	SF3B4	88	71.168	ENSPPAG00000030024	-	67	69.708	Pan_paniscus
ENSPSIG00000009565	SF3B4	68	98.378	ENSPPRG00000007384	SF3B4	66	75.714	Panthera_pardus
ENSPSIG00000009565	SF3B4	68	98.378	ENSPTIG00000014530	SF3B4	66	75.714	Panthera_tigris_altaica
ENSPSIG00000009565	SF3B4	88	72.727	ENSPTRG00000049727	-	66	73.864	Pan_troglodytes
ENSPSIG00000009565	SF3B4	69	97.354	ENSPKIG00000020669	sf3b4	50	97.354	Paramormyrops_kingsleyae
ENSPSIG00000009565	SF3B4	68	98.378	ENSPEMG00000017568	Sf3b4	66	75.714	Peromyscus_maniculatus_bairdii
ENSPSIG00000009565	SF3B4	68	98.378	ENSPCOG00000015399	SF3B4	66	75.714	Propithecus_coquereli
ENSPSIG00000009565	SF3B4	68	98.378	ENSPVAG00000014171	SF3B4	66	75.714	Pteropus_vampyrus
ENSPSIG00000009565	SF3B4	71	94.330	ENSPNYG00000012700	sf3b4	66	78.030	Pundamilia_nyererei
ENSPSIG00000009565	SF3B4	68	98.378	ENSRNOG00000021181	Sf3b4	66	75.714	Rattus_norvegicus
ENSPSIG00000009565	SF3B4	87	60.364	ENSRROG00000028213	-	70	60.000	Rhinopithecus_roxellana
ENSPSIG00000009565	SF3B4	55	37.195	YOR319W	-	76	37.195	Saccharomyces_cerevisiae
ENSPSIG00000009565	SF3B4	67	98.907	ENSSMAG00000006837	sf3b4	66	77.567	Scophthalmus_maximus
ENSPSIG00000009565	SF3B4	68	98.387	ENSSDUG00000012064	sf3b4	66	77.736	Seriola_dumerili
ENSPSIG00000009565	SF3B4	68	98.387	ENSSLDG00000014226	sf3b4	66	77.736	Seriola_lalandi_dorsalis
ENSPSIG00000009565	SF3B4	74	96.059	ENSSPUG00000001028	SF3B4	64	84.375	Sphenodon_punctatus
ENSPSIG00000009565	SF3B4	88	74.912	ENSSSCG00000006665	-	66	75.714	Sus_scrofa
ENSPSIG00000009565	SF3B4	71	97.409	ENSTGUG00000004470	SF3B4	75	97.906	Taeniopygia_guttata
ENSPSIG00000009565	SF3B4	68	98.378	ENSTTRG00000005217	SF3B4	66	75.714	Tursiops_truncatus
ENSPSIG00000009565	SF3B4	68	98.378	ENSUAMG00000022468	SF3B4	66	75.714	Ursus_americanus
ENSPSIG00000009565	SF3B4	68	98.378	ENSUMAG00000003802	SF3B4	66	75.357	Ursus_maritimus
ENSPSIG00000009565	SF3B4	68	98.378	ENSVPAG00000008152	SF3B4	68	75.714	Vicugna_pacos
ENSPSIG00000009565	SF3B4	68	98.378	ENSVVUG00000007732	-	60	87.288	Vulpes_vulpes