EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000009572 (Gene tree)
Gene ID: 102459121
Gene Symbol: -
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 46219 bases
Position: chrJH206134.1:204731-250949
Accession: 102459121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000010845	ResIII	PF04851.15	2.5e-07	1	1
ENSPSIP00000010854	ResIII	PF04851.15	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000010900	-	4193	XM_006113718	ENSPSIP00000010845	1396 (aa)	XP_006113780	K7FS35
ENSPSIT00000010909	-	4065	XM_006113719	ENSPSIP00000010854	1354 (aa)	XP_006113781	K7FS44

Gene Model

Click here to download ENSPSIG00000009572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000009572's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000009572	-	59	69.161	ENSPSIG00000002852	SBNO2	79	69.161
ENSPSIG00000009572	-	92	94.090	ENSPSIG00000009256	-	100	94.012

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000009572	-	100	91.273	ENSG00000139697	SBNO1	100	91.273	Homo_sapiens
ENSPSIG00000009572	-	85	81.039	ENSAPOG00000003196	sbno1	96	81.410	Acanthochromis_polyacanthus
ENSPSIG00000009572	-	100	91.155	ENSAMEG00000015151	SBNO1	100	91.239	Ailuropoda_melanoleuca
ENSPSIG00000009572	-	99	76.235	ENSACIG00000008088	sbno1	98	76.748	Amphilophus_citrinellus
ENSPSIG00000009572	-	99	74.679	ENSAOCG00000014859	sbno1	97	74.982	Amphiprion_ocellaris
ENSPSIG00000009572	-	99	74.679	ENSAPEG00000006069	sbno1	97	74.982	Amphiprion_percula
ENSPSIG00000009572	-	99	75.385	ENSATEG00000006667	sbno1	98	75.783	Anabas_testudineus
ENSPSIG00000009572	-	100	95.279	ENSAPLG00000015674	SBNO1	100	95.279	Anas_platyrhynchos
ENSPSIG00000009572	-	100	93.280	ENSACAG00000015441	SBNO1	88	93.061	Anolis_carolinensis
ENSPSIG00000009572	-	100	91.679	ENSANAG00000029958	-	100	93.110	Aotus_nancymaae
ENSPSIG00000009572	-	99	75.570	ENSACLG00000024913	sbno1	98	76.642	Astatotilapia_calliptera
ENSPSIG00000009572	-	99	78.898	ENSAMXG00000019473	sbno1	98	79.650	Astyanax_mexicanus
ENSPSIG00000009572	-	99	91.202	ENSBTAG00000020505	SBNO1	98	91.886	Bos_taurus
ENSPSIG00000009572	-	100	90.994	ENSCJAG00000016599	SBNO1	100	90.994	Callithrix_jacchus
ENSPSIG00000009572	-	100	91.292	ENSCAFG00000007503	SBNO1	97	95.238	Canis_familiaris
ENSPSIG00000009572	-	100	90.609	ENSCAFG00020015363	SBNO1	99	92.086	Canis_lupus_dingo
ENSPSIG00000009572	-	99	91.124	ENSCHIG00000008382	SBNO1	98	94.896	Capra_hircus
ENSPSIG00000009572	-	100	91.900	ENSTSYG00000012749	SBNO1	100	92.415	Carlito_syrichta
ENSPSIG00000009572	-	97	91.925	ENSCAPG00000000384	SBNO1	99	94.424	Cavia_aperea
ENSPSIG00000009572	-	100	91.345	ENSCPOG00000008109	SBNO1	99	94.424	Cavia_porcellus
ENSPSIG00000009572	-	100	87.270	ENSCCAG00000035316	SBNO1	99	88.493	Cebus_capucinus
ENSPSIG00000009572	-	98	91.347	ENSCATG00000008239	SBNO1	98	94.604	Cercocebus_atys
ENSPSIG00000009572	-	100	91.422	ENSCLAG00000008995	SBNO1	99	94.604	Chinchilla_lanigera
ENSPSIG00000009572	-	85	93.443	ENSCSAG00000002064	SBNO1	100	93.701	Chlorocebus_sabaeus
ENSPSIG00000009572	-	96	88.038	ENSCHOG00000008814	SBNO1	96	88.038	Choloepus_hoffmanni
ENSPSIG00000009572	-	100	98.301	ENSCPBG00000025968	SBNO1	99	98.301	Chrysemys_picta_bellii
ENSPSIG00000009572	-	100	86.286	ENSCANG00000042688	-	100	86.214	Colobus_angolensis_palliatus
ENSPSIG00000009572	-	100	90.701	ENSCGRG00001017470	Sbno1	99	93.345	Cricetulus_griseus_chok1gshd
ENSPSIG00000009572	-	100	90.701	ENSCGRG00000004756	Sbno1	99	93.345	Cricetulus_griseus_crigri
ENSPSIG00000009572	-	99	74.203	ENSCSEG00000011919	sbno1	98	75.216	Cynoglossus_semilaevis
ENSPSIG00000009572	-	99	75.658	ENSCVAG00000007038	sbno1	98	75.913	Cyprinodon_variegatus
ENSPSIG00000009572	-	99	78.561	ENSDARG00000099080	sbno1	98	79.290	Danio_rerio
ENSPSIG00000009572	-	100	87.452	ENSDNOG00000017147	SBNO1	98	91.113	Dasypus_novemcinctus
ENSPSIG00000009572	-	100	81.286	ENSDORG00000015261	Sbno1	99	91.324	Dipodomys_ordii
ENSPSIG00000009572	-	93	84.639	ENSETEG00000005620	SBNO1	93	84.639	Echinops_telfairi
ENSPSIG00000009572	-	74	64.609	ENSEBUG00000013823	sbno1	93	63.514	Eptatretus_burgeri
ENSPSIG00000009572	-	50	91.691	ENSEASG00005012595	-	92	92.582	Equus_asinus_asinus
ENSPSIG00000009572	-	100	91.494	ENSECAG00000006127	SBNO1	100	91.649	Equus_caballus
ENSPSIG00000009572	-	83	90.659	ENSEEUG00000003793	SBNO1	83	90.659	Erinaceus_europaeus
ENSPSIG00000009572	-	99	78.369	ENSELUG00000002886	sbno1	98	78.396	Esox_lucius
ENSPSIG00000009572	-	99	91.559	ENSFCAG00000015331	SBNO1	99	91.571	Felis_catus
ENSPSIG00000009572	-	100	94.993	ENSFALG00000009273	SBNO1	100	94.993	Ficedula_albicollis
ENSPSIG00000009572	-	99	89.979	ENSFDAG00000014232	SBNO1	99	89.921	Fukomys_damarensis
ENSPSIG00000009572	-	99	75.727	ENSFHEG00000007360	sbno1	98	76.130	Fundulus_heteroclitus
ENSPSIG00000009572	-	97	78.343	ENSGMOG00000018229	sbno1	98	79.045	Gadus_morhua
ENSPSIG00000009572	-	88	95.219	ENSGALG00000003392	SBNO1	99	95.219	Gallus_gallus
ENSPSIG00000009572	-	99	77.199	ENSGAFG00000003960	sbno1	97	77.595	Gambusia_affinis
ENSPSIG00000009572	-	97	78.393	ENSGACG00000015633	sbno1	98	78.351	Gasterosteus_aculeatus
ENSPSIG00000009572	-	100	97.063	ENSGAGG00000001065	SBNO1	100	98.404	Gopherus_agassizii
ENSPSIG00000009572	-	100	91.605	ENSGGOG00000015000	SBNO1	99	94.784	Gorilla_gorilla
ENSPSIG00000009572	-	99	69.897	ENSHBUG00000011910	sbno1	98	70.886	Haplochromis_burtoni
ENSPSIG00000009572	-	100	91.422	ENSHGLG00000014165	-	100	92.933	Heterocephalus_glaber_female
ENSPSIG00000009572	-	91	85.178	ENSHCOG00000003246	sbno1	95	85.178	Hippocampus_comes
ENSPSIG00000009572	-	99	78.637	ENSIPUG00000015830	Sbno1	98	78.335	Ictalurus_punctatus
ENSPSIG00000009572	-	100	91.753	ENSSTOG00000023221	SBNO1	99	94.245	Ictidomys_tridecemlineatus
ENSPSIG00000009572	-	100	91.435	ENSJJAG00000001741	Sbno1	100	91.292	Jaculus_jaculus
ENSPSIG00000009572	-	99	77.160	ENSKMAG00000009696	sbno1	98	77.215	Kryptolebias_marmoratus
ENSPSIG00000009572	-	99	75.581	ENSLBEG00000007623	sbno1	98	75.771	Labrus_bergylta
ENSPSIG00000009572	-	99	82.407	ENSLACG00000017227	SBNO1	99	84.342	Latimeria_chalumnae
ENSPSIG00000009572	-	99	82.128	ENSLOCG00000005725	sbno1	97	82.482	Lepisosteus_oculatus
ENSPSIG00000009572	-	100	90.636	ENSLAFG00000002135	SBNO1	100	90.650	Loxodonta_africana
ENSPSIG00000009572	-	100	91.279	ENSMFAG00000031429	SBNO1	100	91.363	Macaca_fascicularis
ENSPSIG00000009572	-	100	91.345	ENSMMUG00000011496	SBNO1	100	91.429	Macaca_mulatta
ENSPSIG00000009572	-	100	90.427	ENSMLEG00000033260	SBNO1	99	94.604	Mandrillus_leucophaeus
ENSPSIG00000009572	-	99	75.545	ENSMAMG00000005473	sbno1	98	75.720	Mastacembelus_armatus
ENSPSIG00000009572	-	100	95.344	ENSMGAG00000003274	SBNO1	100	95.344	Meleagris_gallopavo
ENSPSIG00000009572	-	50	87.644	ENSMAUG00000004834	-	100	92.157	Mesocricetus_auratus
ENSPSIG00000009572	-	100	90.574	ENSMICG00000006573	-	100	91.090	Microcebus_murinus
ENSPSIG00000009572	-	95	94.065	ENSMOCG00000009390	Sbno1	99	94.065	Microtus_ochrogaster
ENSPSIG00000009572	-	99	73.406	ENSMMOG00000008691	sbno1	97	73.762	Mola_mola
ENSPSIG00000009572	-	99	92.632	ENSMODG00000012470	SBNO1	98	92.632	Monodelphis_domestica
ENSPSIG00000009572	-	99	74.491	ENSMALG00000001056	sbno1	98	74.889	Monopterus_albus
ENSPSIG00000009572	-	99	91.117	MGP_CAROLIEiJ_G0027749	Sbno1	100	92.006	Mus_caroli
ENSPSIG00000009572	-	99	91.332	ENSMUSG00000038095	Sbno1	100	92.308	Mus_musculus
ENSPSIG00000009572	-	99	91.404	MGP_PahariEiJ_G0024329	Sbno1	100	92.006	Mus_pahari
ENSPSIG00000009572	-	99	91.189	MGP_SPRETEiJ_G0028747	Sbno1	100	92.308	Mus_spretus
ENSPSIG00000009572	-	100	91.637	ENSMPUG00000001658	SBNO1	100	91.649	Mustela_putorius_furo
ENSPSIG00000009572	-	100	91.137	ENSMLUG00000017159	SBNO1	100	91.149	Myotis_lucifugus
ENSPSIG00000009572	-	100	91.351	ENSNGAG00000012620	Sbno1	98	94.922	Nannospalax_galili
ENSPSIG00000009572	-	99	75.147	ENSNBRG00000019189	sbno1	98	76.212	Neolamprologus_brichardi
ENSPSIG00000009572	-	100	87.850	ENSNLEG00000001502	SBNO1	99	88.700	Nomascus_leucogenys
ENSPSIG00000009572	-	62	84.277	ENSMEUG00000008768	-	93	87.975	Notamacropus_eugenii
ENSPSIG00000009572	-	100	88.214	ENSOPRG00000011054	SBNO1	100	88.302	Ochotona_princeps
ENSPSIG00000009572	-	100	91.774	ENSODEG00000009997	SBNO1	99	94.245	Octodon_degus
ENSPSIG00000009572	-	99	74.298	ENSONIG00000015348	sbno1	98	75.018	Oreochromis_niloticus
ENSPSIG00000009572	-	98	89.971	ENSOCUG00000002441	SBNO1	93	91.050	Oryctolagus_cuniculus
ENSPSIG00000009572	-	99	74.701	ENSORLG00000001593	sbno1	99	74.511	Oryzias_latipes
ENSPSIG00000009572	-	99	74.684	ENSORLG00020015216	sbno1	98	74.785	Oryzias_latipes_hni
ENSPSIG00000009572	-	99	74.789	ENSORLG00015002726	sbno1	98	74.892	Oryzias_latipes_hsok
ENSPSIG00000009572	-	99	74.911	ENSOMEG00000019313	sbno1	98	75.217	Oryzias_melastigma
ENSPSIG00000009572	-	50	84.626	ENSOGAG00000010781	-	100	89.458	Otolemur_garnettii
ENSPSIG00000009572	-	99	90.922	ENSOARG00000004404	SBNO1	98	91.345	Ovis_aries
ENSPSIG00000009572	-	100	91.679	ENSPPAG00000024635	SBNO1	99	94.964	Pan_paniscus
ENSPSIG00000009572	-	99	91.559	ENSPPRG00000022092	SBNO1	99	91.571	Panthera_pardus
ENSPSIG00000009572	-	100	91.339	ENSPTIG00000017803	SBNO1	100	91.422	Panthera_tigris_altaica
ENSPSIG00000009572	-	100	91.605	ENSPTRG00000005597	SBNO1	99	94.784	Pan_troglodytes
ENSPSIG00000009572	-	100	91.679	ENSPANG00000011640	SBNO1	99	94.604	Papio_anubis
ENSPSIG00000009572	-	99	80.470	ENSPKIG00000001441	sbno1	98	80.769	Paramormyrops_kingsleyae
ENSPSIG00000009572	-	100	90.916	ENSPEMG00000016087	Sbno1	99	93.705	Peromyscus_maniculatus_bairdii
ENSPSIG00000009572	-	99	92.410	ENSPCIG00000010985	SBNO1	99	92.931	Phascolarctos_cinereus
ENSPSIG00000009572	-	99	75.811	ENSPFOG00000005069	sbno1	98	76.040	Poecilia_formosa
ENSPSIG00000009572	-	99	75.670	ENSPLAG00000015015	sbno1	98	76.074	Poecilia_latipinna
ENSPSIG00000009572	-	99	75.828	ENSPMEG00000021212	sbno1	98	76.057	Poecilia_mexicana
ENSPSIG00000009572	-	99	75.405	ENSPREG00000017746	sbno1	98	75.627	Poecilia_reticulata
ENSPSIG00000009572	-	100	91.059	ENSPPYG00000005084	SBNO1	100	90.916	Pongo_abelii
ENSPSIG00000009572	-	84	90.541	ENSPCAG00000008634	SBNO1	88	85.910	Procavia_capensis
ENSPSIG00000009572	-	100	91.753	ENSPCOG00000024277	SBNO1	99	94.727	Propithecus_coquereli
ENSPSIG00000009572	-	87	94.643	ENSPVAG00000015304	SBNO1	87	94.643	Pteropus_vampyrus
ENSPSIG00000009572	-	99	74.585	ENSPNYG00000004291	sbno1	98	75.329	Pundamilia_nyererei
ENSPSIG00000009572	-	99	78.714	ENSPNAG00000015622	sbno1	98	78.384	Pygocentrus_nattereri
ENSPSIG00000009572	-	99	91.124	ENSRNOG00000001064	Sbno1	99	94.414	Rattus_norvegicus
ENSPSIG00000009572	-	100	91.753	ENSRROG00000034230	SBNO1	99	94.604	Rhinopithecus_roxellana
ENSPSIG00000009572	-	97	86.792	ENSSBOG00000015422	SBNO1	100	86.741	Saimiri_boliviensis_boliviensis
ENSPSIG00000009572	-	99	81.825	ENSSFOG00015019025	sbno1	98	82.159	Scleropages_formosus
ENSPSIG00000009572	-	99	75.266	ENSSMAG00000013640	sbno1	98	75.596	Scophthalmus_maximus
ENSPSIG00000009572	-	99	75.088	ENSSDUG00000023480	sbno1	98	75.251	Seriola_dumerili
ENSPSIG00000009572	-	99	75.088	ENSSLDG00000007928	sbno1	98	75.251	Seriola_lalandi_dorsalis
ENSPSIG00000009572	-	89	91.761	ENSSARG00000002594	SBNO1	89	91.465	Sorex_araneus
ENSPSIG00000009572	-	100	94.764	ENSSPUG00000012640	SBNO1	100	94.985	Sphenodon_punctatus
ENSPSIG00000009572	-	99	74.614	ENSSPAG00000016244	sbno1	98	74.751	Stegastes_partitus
ENSPSIG00000009572	-	100	91.979	ENSSSCG00000009776	SBNO1	100	91.973	Sus_scrofa
ENSPSIG00000009572	-	100	94.850	ENSTGUG00000005380	SBNO1	100	94.850	Taeniopygia_guttata
ENSPSIG00000009572	-	99	76.985	ENSTRUG00000018490	sbno1	98	77.446	Takifugu_rubripes
ENSPSIG00000009572	-	56	69.877	ENSTNIG00000013506	sbno1	99	70.173	Tetraodon_nigroviridis
ENSPSIG00000009572	-	100	91.422	ENSUAMG00000019671	SBNO1	100	91.506	Ursus_americanus
ENSPSIG00000009572	-	100	91.422	ENSUMAG00000004002	SBNO1	100	91.506	Ursus_maritimus
ENSPSIG00000009572	-	95	86.314	ENSVPAG00000007024	SBNO1	92	86.413	Vicugna_pacos
ENSPSIG00000009572	-	100	91.494	ENSVVUG00000027807	SBNO1	100	91.577	Vulpes_vulpes
ENSPSIG00000009572	-	99	82.194	ENSXETG00000031930	SBNO1	99	81.540	Xenopus_tropicalis
ENSPSIG00000009572	-	89	74.541	ENSXCOG00000011607	sbno1	95	75.693	Xiphophorus_couchianus
ENSPSIG00000009572	-	99	77.093	ENSXMAG00000002140	sbno1	98	76.378	Xiphophorus_maculatus