EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000010101 (Gene tree)
Gene ID: 102460963
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 70529 bases
Position: chrJH212625.1:7460064-7530592
Accession: 102460963
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000011540	ResIII	PF04851.15	1.8e-11	1	1
ENSPSIP00000011536	ResIII	PF04851.15	2e-11	1	1
ENSPSIP00000011540	DEAD	PF00270.29	4.9e-07	1	1
ENSPSIP00000011536	DEAD	PF00270.29	5.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000011597	SMARCA1-202	4950	XM_006136231	ENSPSIP00000011540	972 (aa)	XP_006136293	K7FU30
ENSPSIT00000011593	SMARCA1-201	3716	-	ENSPSIP00000011536	1013 (aa)	-	K7FU26

Gene Model

Click here to download ENSPSIG00000010101's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000010101's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000010101	SMARCA1	58	44.834	ENSPSIG00000012595	CHD1L	61	44.834
ENSPSIG00000010101	SMARCA1	55	41.964	ENSPSIG00000010177	CHD3	50	41.964
ENSPSIG00000010101	SMARCA1	99	86.200	ENSPSIG00000004177	SMARCA5	99	84.600
ENSPSIG00000010101	SMARCA1	53	47.410	ENSPSIG00000005462	HELLS	66	47.410

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000010101	SMARCA1	100	93.210	ENSG00000102038	SMARCA1	95	91.807	Homo_sapiens
ENSPSIG00000010101	SMARCA1	99	84.671	ENSAPOG00000016035	smarca5	98	84.792	Acanthochromis_polyacanthus
ENSPSIG00000010101	SMARCA1	100	91.972	ENSAMEG00000015218	SMARCA1	95	91.412	Ailuropoda_melanoleuca
ENSPSIG00000010101	SMARCA1	93	84.939	ENSACIG00000016982	smarca5	99	85.045	Amphilophus_citrinellus
ENSPSIG00000010101	SMARCA1	99	84.671	ENSAOCG00000015578	smarca5	94	84.671	Amphiprion_ocellaris
ENSPSIG00000010101	SMARCA1	99	84.671	ENSAPEG00000011117	smarca5	99	84.652	Amphiprion_percula
ENSPSIG00000010101	SMARCA1	99	84.362	ENSATEG00000012894	smarca5	93	85.835	Anabas_testudineus
ENSPSIG00000010101	SMARCA1	100	97.942	ENSAPLG00000013149	SMARCA1	99	97.942	Anas_platyrhynchos
ENSPSIG00000010101	SMARCA1	100	96.914	ENSACAG00000011376	SMARCA1	95	95.360	Anolis_carolinensis
ENSPSIG00000010101	SMARCA1	100	87.963	ENSANAG00000023098	SMARCA1	95	86.673	Aotus_nancymaae
ENSPSIG00000010101	SMARCA1	99	84.979	ENSACLG00000025356	smarca5	94	84.979	Astatotilapia_calliptera
ENSPSIG00000010101	SMARCA1	95	92.043	ENSAMXG00000011227	smarca1	99	92.043	Astyanax_mexicanus
ENSPSIG00000010101	SMARCA1	99	85.170	ENSAMXG00000005709	smarca5	94	84.195	Astyanax_mexicanus
ENSPSIG00000010101	SMARCA1	99	92.577	ENSBTAG00000002292	SMARCA1	94	91.709	Bos_taurus
ENSPSIG00000010101	SMARCA1	99	63.710	WBGene00002169	isw-1	96	63.710	Caenorhabditis_elegans
ENSPSIG00000010101	SMARCA1	100	93.107	ENSCJAG00000002868	SMARCA1	95	91.609	Callithrix_jacchus
ENSPSIG00000010101	SMARCA1	100	82.912	ENSCAFG00000018673	SMARCA1	99	83.529	Canis_familiaris
ENSPSIG00000010101	SMARCA1	100	93.313	ENSCAFG00020001751	SMARCA1	95	91.609	Canis_lupus_dingo
ENSPSIG00000010101	SMARCA1	100	92.798	ENSCHIG00000009837	SMARCA1	94	91.810	Capra_hircus
ENSPSIG00000010101	SMARCA1	100	93.107	ENSTSYG00000004240	SMARCA1	98	91.239	Carlito_syrichta
ENSPSIG00000010101	SMARCA1	99	92.070	ENSCPOG00000013601	SMARCA1	95	91.102	Cavia_porcellus
ENSPSIG00000010101	SMARCA1	100	90.123	ENSCCAG00000030817	SMARCA1	95	88.746	Cebus_capucinus
ENSPSIG00000010101	SMARCA1	100	92.073	ENSCATG00000015921	SMARCA1	95	91.807	Cercocebus_atys
ENSPSIG00000010101	SMARCA1	100	92.181	ENSCLAG00000002171	SMARCA1	95	90.622	Chinchilla_lanigera
ENSPSIG00000010101	SMARCA1	100	93.210	ENSCSAG00000008460	SMARCA1	95	91.412	Chlorocebus_sabaeus
ENSPSIG00000010101	SMARCA1	100	99.383	ENSCPBG00000001146	SMARCA1	95	98.124	Chrysemys_picta_bellii
ENSPSIG00000010101	SMARCA1	99	73.998	ENSCING00000004110	swi/snf	96	73.998	Ciona_intestinalis
ENSPSIG00000010101	SMARCA1	99	73.895	ENSCSAVG00000004620	-	100	74.276	Ciona_savignyi
ENSPSIG00000010101	SMARCA1	100	93.107	ENSCANG00000007183	SMARCA1	95	91.708	Colobus_angolensis_palliatus
ENSPSIG00000010101	SMARCA1	100	91.872	ENSCGRG00001010776	Smarca1	95	90.030	Cricetulus_griseus_chok1gshd
ENSPSIG00000010101	SMARCA1	98	91.772	ENSCGRG00000015301	Smarca1	98	90.293	Cricetulus_griseus_crigri
ENSPSIG00000010101	SMARCA1	99	84.568	ENSCSEG00000000328	smarca5	94	84.568	Cynoglossus_semilaevis
ENSPSIG00000010101	SMARCA1	99	84.156	ENSCVAG00000008668	smarca5	99	84.198	Cyprinodon_variegatus
ENSPSIG00000010101	SMARCA1	99	89.372	ENSDARG00000012776	smarca1	98	87.379	Danio_rerio
ENSPSIG00000010101	SMARCA1	99	84.346	ENSDARG00000052348	smarca5	94	84.346	Danio_rerio
ENSPSIG00000010101	SMARCA1	98	92.616	ENSDNOG00000004315	SMARCA1	94	90.799	Dasypus_novemcinctus
ENSPSIG00000010101	SMARCA1	98	92.194	ENSDORG00000009270	Smarca1	94	90.495	Dipodomys_ordii
ENSPSIG00000010101	SMARCA1	96	75.774	FBgn0011604	Iswi	98	71.065	Drosophila_melanogaster
ENSPSIG00000010101	SMARCA1	84	92.727	ENSETEG00000017426	SMARCA1	85	92.727	Echinops_telfairi
ENSPSIG00000010101	SMARCA1	100	82.510	ENSEBUG00000001239	smarca5	98	80.594	Eptatretus_burgeri
ENSPSIG00000010101	SMARCA1	100	88.151	ENSEASG00005008218	SMARCA1	99	88.662	Equus_asinus_asinus
ENSPSIG00000010101	SMARCA1	100	93.107	ENSECAG00000012106	SMARCA1	94	91.412	Equus_caballus
ENSPSIG00000010101	SMARCA1	82	92.715	ENSEEUG00000014927	SMARCA1	83	92.715	Erinaceus_europaeus
ENSPSIG00000010101	SMARCA1	99	91.031	ENSELUG00000010515	smarca1	98	89.593	Esox_lucius
ENSPSIG00000010101	SMARCA1	100	93.004	ENSFCAG00000018496	SMARCA1	95	91.708	Felis_catus
ENSPSIG00000010101	SMARCA1	94	97.588	ENSFALG00000000209	SMARCA1	98	97.588	Ficedula_albicollis
ENSPSIG00000010101	SMARCA1	98	91.599	ENSFDAG00000009818	SMARCA1	97	91.599	Fukomys_damarensis
ENSPSIG00000010101	SMARCA1	99	84.362	ENSFHEG00000007687	smarca5	93	84.362	Fundulus_heteroclitus
ENSPSIG00000010101	SMARCA1	98	98.209	ENSGALG00000008431	SMARCA1	97	96.667	Gallus_gallus
ENSPSIG00000010101	SMARCA1	99	84.568	ENSGAFG00000017731	smarca5	94	84.568	Gambusia_affinis
ENSPSIG00000010101	SMARCA1	100	99.383	ENSGAGG00000023575	SMARCA1	100	99.383	Gopherus_agassizii
ENSPSIG00000010101	SMARCA1	73	87.941	ENSGGOG00000012841	-	95	85.833	Gorilla_gorilla
ENSPSIG00000010101	SMARCA1	100	91.667	ENSHGLG00000003080	SMARCA1	95	90.128	Heterocephalus_glaber_female
ENSPSIG00000010101	SMARCA1	99	91.658	ENSHGLG00100001102	SMARCA1	100	89.832	Heterocephalus_glaber_male
ENSPSIG00000010101	SMARCA1	99	84.465	ENSHCOG00000005458	smarca5	94	84.465	Hippocampus_comes
ENSPSIG00000010101	SMARCA1	99	90.279	ENSIPUG00000016905	Smarca1	98	90.279	Ictalurus_punctatus
ENSPSIG00000010101	SMARCA1	99	85.067	ENSIPUG00000005229	SMARCA5	98	83.400	Ictalurus_punctatus
ENSPSIG00000010101	SMARCA1	100	93.107	ENSSTOG00000014524	SMARCA1	94	93.100	Ictidomys_tridecemlineatus
ENSPSIG00000010101	SMARCA1	100	92.284	ENSJJAG00000002593	Smarca1	95	90.079	Jaculus_jaculus
ENSPSIG00000010101	SMARCA1	99	84.156	ENSKMAG00000003777	smarca5	94	84.156	Kryptolebias_marmoratus
ENSPSIG00000010101	SMARCA1	94	85.542	ENSLBEG00000013295	SMARCA1	100	85.714	Labrus_bergylta
ENSPSIG00000010101	SMARCA1	99	83.951	ENSLBEG00000018112	smarca5	94	83.951	Labrus_bergylta
ENSPSIG00000010101	SMARCA1	100	94.239	ENSLACG00000016697	SMARCA1	98	92.892	Latimeria_chalumnae
ENSPSIG00000010101	SMARCA1	99	92.791	ENSLOCG00000014591	smarca1	97	90.918	Lepisosteus_oculatus
ENSPSIG00000010101	SMARCA1	99	92.585	ENSLAFG00000000896	SMARCA1	100	90.570	Loxodonta_africana
ENSPSIG00000010101	SMARCA1	100	93.210	ENSMFAG00000002117	SMARCA1	97	91.524	Macaca_fascicularis
ENSPSIG00000010101	SMARCA1	100	92.073	ENSMMUG00000008818	SMARCA1	98	93.446	Macaca_mulatta
ENSPSIG00000010101	SMARCA1	100	92.073	ENSMNEG00000041768	SMARCA1	97	91.524	Macaca_nemestrina
ENSPSIG00000010101	SMARCA1	100	93.107	ENSMLEG00000043198	SMARCA1	95	91.708	Mandrillus_leucophaeus
ENSPSIG00000010101	SMARCA1	99	84.671	ENSMAMG00000014294	smarca5	95	83.083	Mastacembelus_armatus
ENSPSIG00000010101	SMARCA1	99	84.979	ENSMZEG00005009369	smarca5	94	84.979	Maylandia_zebra
ENSPSIG00000010101	SMARCA1	100	96.646	ENSMGAG00000007042	SMARCA1	99	96.644	Meleagris_gallopavo
ENSPSIG00000010101	SMARCA1	98	91.772	ENSMAUG00000008133	Smarca1	94	90.394	Mesocricetus_auratus
ENSPSIG00000010101	SMARCA1	100	93.210	ENSMICG00000015768	SMARCA1	95	92.004	Microcebus_murinus
ENSPSIG00000010101	SMARCA1	100	91.667	ENSMOCG00000009464	Smarca1	94	90.597	Microtus_ochrogaster
ENSPSIG00000010101	SMARCA1	99	83.025	ENSMMOG00000005547	smarca5	98	83.025	Mola_mola
ENSPSIG00000010101	SMARCA1	100	96.708	ENSMODG00000013187	-	96	95.064	Monodelphis_domestica
ENSPSIG00000010101	SMARCA1	99	84.362	ENSMALG00000002081	smarca5	97	83.282	Monopterus_albus
ENSPSIG00000010101	SMARCA1	100	91.770	MGP_CAROLIEiJ_G0033034	Smarca1	95	89.686	Mus_caroli
ENSPSIG00000010101	SMARCA1	100	91.770	ENSMUSG00000031099	Smarca1	95	89.784	Mus_musculus
ENSPSIG00000010101	SMARCA1	100	91.564	MGP_PahariEiJ_G0031579	Smarca1	95	89.489	Mus_pahari
ENSPSIG00000010101	SMARCA1	100	91.770	MGP_SPRETEiJ_G0034192	Smarca1	95	89.784	Mus_spretus
ENSPSIG00000010101	SMARCA1	100	91.972	ENSMPUG00000017423	SMARCA1	89	91.807	Mustela_putorius_furo
ENSPSIG00000010101	SMARCA1	100	90.467	ENSMLUG00000029614	SMARCA1	95	89.852	Myotis_lucifugus
ENSPSIG00000010101	SMARCA1	98	92.616	ENSNGAG00000006492	Smarca1	93	91.768	Nannospalax_galili
ENSPSIG00000010101	SMARCA1	99	84.979	ENSNBRG00000004463	smarca5	99	83.383	Neolamprologus_brichardi
ENSPSIG00000010101	SMARCA1	100	91.463	ENSNLEG00000015179	SMARCA1	98	90.817	Nomascus_leucogenys
ENSPSIG00000010101	SMARCA1	94	86.905	ENSMEUG00000008819	SMARCA1	100	86.870	Notamacropus_eugenii
ENSPSIG00000010101	SMARCA1	98	91.146	ENSODEG00000012163	SMARCA1	94	91.102	Octodon_degus
ENSPSIG00000010101	SMARCA1	99	84.979	ENSONIG00000009993	smarca5	94	84.979	Oreochromis_niloticus
ENSPSIG00000010101	SMARCA1	100	98.148	ENSOANG00000002862	SMARCA1	100	98.148	Ornithorhynchus_anatinus
ENSPSIG00000010101	SMARCA1	100	92.490	ENSOCUG00000001047	SMARCA1	95	90.819	Oryctolagus_cuniculus
ENSPSIG00000010101	SMARCA1	99	85.082	ENSORLG00000021998	smarca5	95	83.584	Oryzias_latipes
ENSPSIG00000010101	SMARCA1	99	85.185	ENSORLG00020017679	smarca5	95	83.684	Oryzias_latipes_hni
ENSPSIG00000010101	SMARCA1	99	85.082	ENSORLG00015017210	smarca5	95	83.483	Oryzias_latipes_hsok
ENSPSIG00000010101	SMARCA1	99	85.185	ENSOMEG00000000086	smarca5	94	85.185	Oryzias_melastigma
ENSPSIG00000010101	SMARCA1	98	92.396	ENSOGAG00000004399	SMARCA1	94	92.315	Otolemur_garnettii
ENSPSIG00000010101	SMARCA1	100	92.798	ENSOARG00000014638	SMARCA1	99	92.798	Ovis_aries
ENSPSIG00000010101	SMARCA1	100	93.210	ENSPPAG00000034647	SMARCA1	95	91.807	Pan_paniscus
ENSPSIG00000010101	SMARCA1	100	93.210	ENSPPRG00000008929	SMARCA1	95	91.905	Panthera_pardus
ENSPSIG00000010101	SMARCA1	100	91.203	ENSPTIG00000000915	SMARCA1	98	90.963	Panthera_tigris_altaica
ENSPSIG00000010101	SMARCA1	100	93.210	ENSPTRG00000049876	SMARCA1	95	91.807	Pan_troglodytes
ENSPSIG00000010101	SMARCA1	100	93.210	ENSPANG00000003871	SMARCA1	95	91.807	Papio_anubis
ENSPSIG00000010101	SMARCA1	95	90.655	ENSPKIG00000013411	smarca1	94	90.675	Paramormyrops_kingsleyae
ENSPSIG00000010101	SMARCA1	98	92.194	ENSPEMG00000017503	Smarca1	94	91.001	Peromyscus_maniculatus_bairdii
ENSPSIG00000010101	SMARCA1	100	97.325	ENSPCIG00000015460	SMARCA1	98	95.854	Phascolarctos_cinereus
ENSPSIG00000010101	SMARCA1	99	84.465	ENSPFOG00000007649	smarca5	94	84.465	Poecilia_formosa
ENSPSIG00000010101	SMARCA1	99	84.465	ENSPLAG00000003363	smarca5	94	84.465	Poecilia_latipinna
ENSPSIG00000010101	SMARCA1	99	84.568	ENSPMEG00000019849	smarca5	94	84.568	Poecilia_mexicana
ENSPSIG00000010101	SMARCA1	99	84.568	ENSPREG00000023250	smarca5	94	84.568	Poecilia_reticulata
ENSPSIG00000010101	SMARCA1	100	90.329	ENSPPYG00000020703	SMARCA1	95	88.648	Pongo_abelii
ENSPSIG00000010101	SMARCA1	80	84.358	ENSPCOG00000020722	SMARCA1	94	88.807	Propithecus_coquereli
ENSPSIG00000010101	SMARCA1	92	91.753	ENSPVAG00000003805	SMARCA1	94	85.137	Pteropus_vampyrus
ENSPSIG00000010101	SMARCA1	59	88.169	ENSPNYG00000012299	smarca5	93	86.486	Pundamilia_nyererei
ENSPSIG00000010101	SMARCA1	100	91.872	ENSRNOG00000003762	Smarca1	95	90.128	Rattus_norvegicus
ENSPSIG00000010101	SMARCA1	100	93.107	ENSRROG00000034167	SMARCA1	95	91.708	Rhinopithecus_roxellana
ENSPSIG00000010101	SMARCA1	100	93.107	ENSSBOG00000020641	SMARCA1	99	93.107	Saimiri_boliviensis_boliviensis
ENSPSIG00000010101	SMARCA1	100	89.003	ENSSHAG00000013518	SMARCA1	99	89.003	Sarcophilus_harrisii
ENSPSIG00000010101	SMARCA1	99	90.965	ENSSFOG00015009043	smarca1	98	89.141	Scleropages_formosus
ENSPSIG00000010101	SMARCA1	99	85.052	ENSSFOG00015016794	smarca5	100	85.052	Scleropages_formosus
ENSPSIG00000010101	SMARCA1	99	83.951	ENSSMAG00000004801	smarca5	94	83.951	Scophthalmus_maximus
ENSPSIG00000010101	SMARCA1	99	84.259	ENSSDUG00000020690	smarca5	94	84.259	Seriola_dumerili
ENSPSIG00000010101	SMARCA1	99	84.259	ENSSLDG00000025190	smarca5	94	84.259	Seriola_lalandi_dorsalis
ENSPSIG00000010101	SMARCA1	84	92.553	ENSSARG00000000842	SMARCA1	91	85.110	Sorex_araneus
ENSPSIG00000010101	SMARCA1	98	97.787	ENSSPUG00000000590	SMARCA1	95	96.364	Sphenodon_punctatus
ENSPSIG00000010101	SMARCA1	99	84.774	ENSSPAG00000002894	smarca5	97	84.775	Stegastes_partitus
ENSPSIG00000010101	SMARCA1	99	92.990	ENSSSCG00000012649	SMARCA1	94	92.997	Sus_scrofa
ENSPSIG00000010101	SMARCA1	100	97.325	ENSTGUG00000003899	-	99	97.325	Taeniopygia_guttata
ENSPSIG00000010101	SMARCA1	99	84.568	ENSTRUG00000014094	smarca5	94	84.568	Takifugu_rubripes
ENSPSIG00000010101	SMARCA1	99	83.230	ENSTNIG00000017717	smarca5	93	83.230	Tetraodon_nigroviridis
ENSPSIG00000010101	SMARCA1	98	85.628	ENSTBEG00000014973	SMARCA1	99	85.628	Tupaia_belangeri
ENSPSIG00000010101	SMARCA1	98	88.958	ENSTTRG00000006168	SMARCA1	99	89.002	Tursiops_truncatus
ENSPSIG00000010101	SMARCA1	100	92.901	ENSUAMG00000020201	SMARCA1	95	91.017	Ursus_americanus
ENSPSIG00000010101	SMARCA1	99	88.774	ENSUMAG00000004073	SMARCA1	98	92.105	Ursus_maritimus
ENSPSIG00000010101	SMARCA1	81	93.160	ENSVPAG00000010492	-	85	93.160	Vicugna_pacos
ENSPSIG00000010101	SMARCA1	100	93.313	ENSVVUG00000008878	SMARCA1	99	93.565	Vulpes_vulpes
ENSPSIG00000010101	SMARCA1	99	93.004	ENSXETG00000001526	smarca1	100	91.964	Xenopus_tropicalis
ENSPSIG00000010101	SMARCA1	99	84.465	ENSXCOG00000011170	smarca5	98	82.983	Xiphophorus_couchianus
ENSPSIG00000010101	SMARCA1	99	84.465	ENSXMAG00000009678	smarca5	97	85.840	Xiphophorus_maculatus