EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000010318 (Gene tree)
Gene ID: 102461718
Gene Symbol: A1CF
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 58167 bases
Position: chrJH208382.1:2434713-2492879
Accession: 102461718
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000011402	DND1_DSRM	PF14709.7	5.3e-25	1	1
ENSPSIP00000011402	RRM_1	PF00076.22	3.6e-41	1	3
ENSPSIP00000011402	RRM_1	PF00076.22	3.6e-41	2	3
ENSPSIP00000011402	RRM_1	PF00076.22	3.6e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000011459	A1CF-201	1937	XM_006121474	ENSPSIP00000011402	582 (aa)	XP_006121536	K7FTP2

Gene Model

Click here to download ENSPSIG00000010318's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000010318's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000010318	A1CF	75	58.969	ENSPSIG00000017516	RBM47	79	58.969
ENSPSIG00000010318	A1CF	50	53.925	ENSPSIG00000012306	SYNCRIP	58	50.313
ENSPSIG00000010318	A1CF	87	72.000	ENSPSIG00000006429	RBM46	92	72.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000010318	A1CF	100	87.905	ENSG00000148584	A1CF	100	93.532	Homo_sapiens
ENSPSIG00000010318	A1CF	100	73.862	ENSAPOG00000008259	a1cf	100	74.030	Acanthochromis_polyacanthus
ENSPSIG00000010318	A1CF	100	86.003	ENSAMEG00000000523	A1CF	100	86.341	Ailuropoda_melanoleuca
ENSPSIG00000010318	A1CF	100	75.868	ENSACIG00000008632	a1cf	100	77.355	Amphilophus_citrinellus
ENSPSIG00000010318	A1CF	100	74.875	ENSAOCG00000023744	a1cf	96	82.899	Amphiprion_ocellaris
ENSPSIG00000010318	A1CF	100	73.727	ENSAPEG00000009537	a1cf	100	74.713	Amphiprion_percula
ENSPSIG00000010318	A1CF	100	76.733	ENSATEG00000013720	a1cf	100	78.053	Anabas_testudineus
ENSPSIG00000010318	A1CF	100	91.186	ENSAPLG00000002964	A1CF	100	91.186	Anas_platyrhynchos
ENSPSIG00000010318	A1CF	100	87.973	ENSACAG00000015269	A1CF	100	87.973	Anolis_carolinensis
ENSPSIG00000010318	A1CF	100	88.927	ENSANAG00000019974	A1CF	100	88.927	Aotus_nancymaae
ENSPSIG00000010318	A1CF	100	74.916	ENSACLG00000017428	a1cf	100	76.421	Astatotilapia_calliptera
ENSPSIG00000010318	A1CF	100	73.884	ENSAMXG00000018180	a1cf	100	73.884	Astyanax_mexicanus
ENSPSIG00000010318	A1CF	100	88.095	ENSBTAG00000021195	A1CF	100	89.981	Bos_taurus
ENSPSIG00000010318	A1CF	100	87.395	ENSCJAG00000005045	A1CF	100	87.395	Callithrix_jacchus
ENSPSIG00000010318	A1CF	100	86.486	ENSCAFG00000015581	A1CF	100	86.993	Canis_familiaris
ENSPSIG00000010318	A1CF	100	86.486	ENSCAFG00020026421	A1CF	98	90.572	Canis_lupus_dingo
ENSPSIG00000010318	A1CF	100	86.577	ENSCHIG00000020411	A1CF	100	86.577	Capra_hircus
ENSPSIG00000010318	A1CF	94	87.862	ENSTSYG00000001755	A1CF	100	88.225	Carlito_syrichta
ENSPSIG00000010318	A1CF	100	79.630	ENSCAPG00000017386	A1CF	100	79.012	Cavia_aperea
ENSPSIG00000010318	A1CF	100	86.218	ENSCPOG00000009807	A1CF	100	86.387	Cavia_porcellus
ENSPSIG00000010318	A1CF	100	87.374	ENSCCAG00000018168	A1CF	100	87.374	Cebus_capucinus
ENSPSIG00000010318	A1CF	100	88.547	ENSCATG00000043715	A1CF	100	88.718	Cercocebus_atys
ENSPSIG00000010318	A1CF	100	85.762	ENSCLAG00000010424	A1CF	100	85.762	Chinchilla_lanigera
ENSPSIG00000010318	A1CF	100	87.858	ENSCSAG00000007032	A1CF	100	88.027	Chlorocebus_sabaeus
ENSPSIG00000010318	A1CF	98	83.276	ENSCHOG00000009089	A1CF	99	83.106	Choloepus_hoffmanni
ENSPSIG00000010318	A1CF	100	95.932	ENSCPBG00000026464	A1CF	100	95.932	Chrysemys_picta_bellii
ENSPSIG00000010318	A1CF	100	87.521	ENSCANG00000038032	A1CF	100	87.690	Colobus_angolensis_palliatus
ENSPSIG00000010318	A1CF	100	85.403	ENSCGRG00001017413	A1cf	100	85.570	Cricetulus_griseus_chok1gshd
ENSPSIG00000010318	A1CF	100	85.235	ENSCGRG00000017332	A1cf	100	85.235	Cricetulus_griseus_crigri
ENSPSIG00000010318	A1CF	100	74.959	ENSCSEG00000002361	a1cf	100	76.451	Cynoglossus_semilaevis
ENSPSIG00000010318	A1CF	100	75.248	ENSCVAG00000010520	a1cf	100	76.898	Cyprinodon_variegatus
ENSPSIG00000010318	A1CF	100	79.153	ENSDARG00000002968	a1cf	100	80.678	Danio_rerio
ENSPSIG00000010318	A1CF	100	85.906	ENSDNOG00000002829	A1CF	100	86.409	Dasypus_novemcinctus
ENSPSIG00000010318	A1CF	82	90.217	ENSETEG00000012527	A1CF	81	90.217	Echinops_telfairi
ENSPSIG00000010318	A1CF	100	86.789	ENSEASG00005012924	A1CF	100	86.789	Equus_asinus_asinus
ENSPSIG00000010318	A1CF	100	86.455	ENSECAG00000010424	A1CF	100	86.455	Equus_caballus
ENSPSIG00000010318	A1CF	78	77.996	ENSEEUG00000000013	A1CF	100	77.996	Erinaceus_europaeus
ENSPSIG00000010318	A1CF	100	79.328	ENSELUG00000003159	a1cf	100	79.328	Esox_lucius
ENSPSIG00000010318	A1CF	100	86.667	ENSFCAG00000011179	A1CF	100	87.009	Felis_catus
ENSPSIG00000010318	A1CF	100	91.065	ENSFALG00000013183	A1CF	100	91.065	Ficedula_albicollis
ENSPSIG00000010318	A1CF	100	87.075	ENSFDAG00000019371	A1CF	100	87.415	Fukomys_damarensis
ENSPSIG00000010318	A1CF	100	69.637	ENSFHEG00000019652	a1cf	96	84.375	Fundulus_heteroclitus
ENSPSIG00000010318	A1CF	100	70.248	ENSGMOG00000018943	a1cf	100	70.744	Gadus_morhua
ENSPSIG00000010318	A1CF	95	90.877	ENSGALG00000003765	A1CF	97	90.877	Gallus_gallus
ENSPSIG00000010318	A1CF	100	71.833	ENSGAFG00000014868	a1cf	100	72.333	Gambusia_affinis
ENSPSIG00000010318	A1CF	100	72.368	ENSGACG00000010241	a1cf	100	73.191	Gasterosteus_aculeatus
ENSPSIG00000010318	A1CF	94	95.512	ENSGAGG00000016508	A1CF	97	95.512	Gopherus_agassizii
ENSPSIG00000010318	A1CF	100	86.555	ENSGGOG00000009670	A1CF	100	86.891	Gorilla_gorilla
ENSPSIG00000010318	A1CF	100	76.033	ENSHBUG00000021959	a1cf	100	77.686	Haplochromis_burtoni
ENSPSIG00000010318	A1CF	100	86.242	ENSHGLG00000008955	A1CF	100	86.242	Heterocephalus_glaber_female
ENSPSIG00000010318	A1CF	100	85.738	ENSHGLG00100000518	A1CF	100	85.738	Heterocephalus_glaber_male
ENSPSIG00000010318	A1CF	95	71.552	ENSHCOG00000017669	a1cf	100	72.594	Hippocampus_comes
ENSPSIG00000010318	A1CF	90	81.157	ENSIPUG00000010367	a1cf	99	79.174	Ictalurus_punctatus
ENSPSIG00000010318	A1CF	100	75.122	ENSKMAG00000006568	a1cf	100	76.260	Kryptolebias_marmoratus
ENSPSIG00000010318	A1CF	99	74.304	ENSLBEG00000020994	a1cf	99	76.471	Labrus_bergylta
ENSPSIG00000010318	A1CF	100	84.957	ENSLACG00000008061	A1CF	100	84.957	Latimeria_chalumnae
ENSPSIG00000010318	A1CF	100	82.323	ENSLOCG00000006302	a1cf	100	82.323	Lepisosteus_oculatus
ENSPSIG00000010318	A1CF	100	86.745	ENSLAFG00000015462	A1CF	100	86.913	Loxodonta_africana
ENSPSIG00000010318	A1CF	100	88.718	ENSMFAG00000035948	A1CF	100	88.889	Macaca_fascicularis
ENSPSIG00000010318	A1CF	100	88.718	ENSMMUG00000007077	A1CF	100	88.889	Macaca_mulatta
ENSPSIG00000010318	A1CF	100	88.547	ENSMNEG00000031454	A1CF	100	88.718	Macaca_nemestrina
ENSPSIG00000010318	A1CF	100	87.352	ENSMLEG00000037223	A1CF	100	87.521	Mandrillus_leucophaeus
ENSPSIG00000010318	A1CF	100	73.466	ENSMAMG00000010402	a1cf	100	75.622	Mastacembelus_armatus
ENSPSIG00000010318	A1CF	100	76.510	ENSMZEG00005013245	a1cf	100	77.517	Maylandia_zebra
ENSPSIG00000010318	A1CF	100	90.863	ENSMGAG00000001507	A1CF	100	90.863	Meleagris_gallopavo
ENSPSIG00000010318	A1CF	100	84.732	ENSMAUG00000007422	A1cf	100	85.067	Mesocricetus_auratus
ENSPSIG00000010318	A1CF	100	87.310	ENSMICG00000003377	A1CF	100	87.479	Microcebus_murinus
ENSPSIG00000010318	A1CF	100	85.067	ENSMOCG00000021536	A1cf	100	85.235	Microtus_ochrogaster
ENSPSIG00000010318	A1CF	100	67.504	ENSMMOG00000009422	a1cf	100	69.347	Mola_mola
ENSPSIG00000010318	A1CF	92	89.944	ENSMODG00000016478	A1CF	99	89.944	Monodelphis_domestica
ENSPSIG00000010318	A1CF	100	73.935	ENSMALG00000012992	a1cf	100	73.935	Monopterus_albus
ENSPSIG00000010318	A1CF	100	85.714	MGP_CAROLIEiJ_G0022873	A1cf	100	86.224	Mus_caroli
ENSPSIG00000010318	A1CF	100	85.714	ENSMUSG00000052595	A1cf	99	90.551	Mus_musculus
ENSPSIG00000010318	A1CF	100	85.714	MGP_PahariEiJ_G0014366	A1cf	100	85.714	Mus_pahari
ENSPSIG00000010318	A1CF	100	85.884	MGP_SPRETEiJ_G0023792	A1cf	100	86.395	Mus_spretus
ENSPSIG00000010318	A1CF	100	80.607	ENSMPUG00000016971	A1CF	100	81.113	Mustela_putorius_furo
ENSPSIG00000010318	A1CF	100	85.738	ENSMLUG00000016071	A1CF	100	86.074	Myotis_lucifugus
ENSPSIG00000010318	A1CF	100	85.235	ENSNGAG00000015136	A1cf	100	85.403	Nannospalax_galili
ENSPSIG00000010318	A1CF	100	76.033	ENSNBRG00000001712	a1cf	100	77.686	Neolamprologus_brichardi
ENSPSIG00000010318	A1CF	100	87.081	ENSNLEG00000012028	A1CF	100	87.248	Nomascus_leucogenys
ENSPSIG00000010318	A1CF	94	90.182	ENSMEUG00000015909	A1CF	100	90.182	Notamacropus_eugenii
ENSPSIG00000010318	A1CF	89	78.327	ENSOPRG00000010667	A1CF	100	76.087	Ochotona_princeps
ENSPSIG00000010318	A1CF	100	76.033	ENSONIG00000019105	a1cf	100	77.686	Oreochromis_niloticus
ENSPSIG00000010318	A1CF	79	89.978	ENSOANG00000007360	A1CF	99	89.978	Ornithorhynchus_anatinus
ENSPSIG00000010318	A1CF	100	86.248	ENSOCUG00000011587	A1CF	100	86.418	Oryctolagus_cuniculus
ENSPSIG00000010318	A1CF	100	73.970	ENSORLG00000013342	a1cf	100	73.970	Oryzias_latipes
ENSPSIG00000010318	A1CF	100	74.632	ENSORLG00020000586	a1cf	100	75.450	Oryzias_latipes_hni
ENSPSIG00000010318	A1CF	100	74.632	ENSORLG00015018569	a1cf	100	75.450	Oryzias_latipes_hsok
ENSPSIG00000010318	A1CF	100	76.617	ENSOMEG00000013531	a1cf	100	76.617	Oryzias_melastigma
ENSPSIG00000010318	A1CF	100	86.847	ENSOGAG00000012884	A1CF	100	87.184	Otolemur_garnettii
ENSPSIG00000010318	A1CF	100	86.745	ENSOARG00000013695	A1CF	100	86.745	Ovis_aries
ENSPSIG00000010318	A1CF	97	85.095	ENSPPAG00000028115	A1CF	99	90.081	Pan_paniscus
ENSPSIG00000010318	A1CF	100	85.835	ENSPPRG00000012180	A1CF	100	86.172	Panthera_pardus
ENSPSIG00000010318	A1CF	100	85.835	ENSPTIG00000021223	A1CF	100	86.172	Panthera_tigris_altaica
ENSPSIG00000010318	A1CF	100	87.905	ENSPTRG00000002508	A1CF	100	88.245	Pan_troglodytes
ENSPSIG00000010318	A1CF	100	88.718	ENSPANG00000021988	A1CF	100	88.889	Papio_anubis
ENSPSIG00000010318	A1CF	100	78.727	ENSPKIG00000025176	a1cf	100	78.894	Paramormyrops_kingsleyae
ENSPSIG00000010318	A1CF	98	67.298	ENSPMGG00000013359	a1cf	99	68.924	Periophthalmus_magnuspinnatus
ENSPSIG00000010318	A1CF	100	86.074	ENSPEMG00000015021	A1cf	100	86.074	Peromyscus_maniculatus_bairdii
ENSPSIG00000010318	A1CF	100	89.708	ENSPCIG00000002175	A1CF	100	89.708	Phascolarctos_cinereus
ENSPSIG00000010318	A1CF	100	75.081	ENSPFOG00000006683	a1cf	100	76.710	Poecilia_formosa
ENSPSIG00000010318	A1CF	100	74.919	ENSPFOG00000007437	-	100	76.547	Poecilia_formosa
ENSPSIG00000010318	A1CF	100	75.908	ENSPLAG00000000026	a1cf	100	77.558	Poecilia_latipinna
ENSPSIG00000010318	A1CF	100	75.908	ENSPLAG00000001210	-	100	77.558	Poecilia_latipinna
ENSPSIG00000010318	A1CF	100	68.137	ENSPMEG00000015529	-	100	69.771	Poecilia_mexicana
ENSPSIG00000010318	A1CF	100	69.040	ENSPMEG00000000921	a1cf	100	70.695	Poecilia_mexicana
ENSPSIG00000010318	A1CF	100	75.244	ENSPREG00000016298	a1cf	100	76.710	Poecilia_reticulata
ENSPSIG00000010318	A1CF	100	88.435	ENSPPYG00000002819	A1CF	100	88.605	Pongo_abelii
ENSPSIG00000010318	A1CF	79	68.172	ENSPCAG00000006463	A1CF	79	68.172	Procavia_capensis
ENSPSIG00000010318	A1CF	100	86.265	ENSPCOG00000024172	A1CF	100	86.432	Propithecus_coquereli
ENSPSIG00000010318	A1CF	100	75.204	ENSPNYG00000017944	a1cf	100	76.835	Pundamilia_nyererei
ENSPSIG00000010318	A1CF	100	80.537	ENSPNAG00000007704	a1cf	100	80.705	Pygocentrus_nattereri
ENSPSIG00000010318	A1CF	100	86.054	ENSRNOG00000033195	A1cf	100	86.565	Rattus_norvegicus
ENSPSIG00000010318	A1CF	100	81.513	ENSRBIG00000042892	A1CF	100	87.425	Rhinopithecus_bieti
ENSPSIG00000010318	A1CF	100	87.521	ENSRROG00000041398	A1CF	99	88.949	Rhinopithecus_roxellana
ENSPSIG00000010318	A1CF	100	87.248	ENSSBOG00000021930	A1CF	100	87.897	Saimiri_boliviensis_boliviensis
ENSPSIG00000010318	A1CF	100	89.402	ENSSHAG00000005096	A1CF	100	89.402	Sarcophilus_harrisii
ENSPSIG00000010318	A1CF	100	79.664	ENSSFOG00015011774	a1cf	100	80.000	Scleropages_formosus
ENSPSIG00000010318	A1CF	100	74.756	ENSSMAG00000013271	a1cf	100	75.244	Scophthalmus_maximus
ENSPSIG00000010318	A1CF	100	75.166	ENSSDUG00000013930	a1cf	100	76.490	Seriola_dumerili
ENSPSIG00000010318	A1CF	100	70.117	ENSSLDG00000004290	a1cf	100	71.285	Seriola_lalandi_dorsalis
ENSPSIG00000010318	A1CF	95	78.175	ENSSARG00000005940	A1CF	96	78.175	Sorex_araneus
ENSPSIG00000010318	A1CF	95	89.027	ENSSPUG00000006797	A1CF	95	89.027	Sphenodon_punctatus
ENSPSIG00000010318	A1CF	100	87.919	ENSSSCG00000010431	A1CF	100	87.919	Sus_scrofa
ENSPSIG00000010318	A1CF	100	88.796	ENSTGUG00000005090	A1CF	100	88.796	Taeniopygia_guttata
ENSPSIG00000010318	A1CF	100	73.736	ENSTRUG00000001982	a1cf	100	73.899	Takifugu_rubripes
ENSPSIG00000010318	A1CF	100	74.146	ENSTNIG00000003580	a1cf	100	74.797	Tetraodon_nigroviridis
ENSPSIG00000010318	A1CF	97	82.632	ENSTTRG00000013190	A1CF	95	82.632	Tursiops_truncatus
ENSPSIG00000010318	A1CF	100	87.350	ENSUAMG00000020065	A1CF	100	87.521	Ursus_americanus
ENSPSIG00000010318	A1CF	100	86.125	ENSUMAG00000011162	A1CF	100	86.464	Ursus_maritimus
ENSPSIG00000010318	A1CF	87	84.825	ENSVPAG00000006130	A1CF	86	84.825	Vicugna_pacos
ENSPSIG00000010318	A1CF	100	88.185	ENSVVUG00000002504	A1CF	99	89.777	Vulpes_vulpes
ENSPSIG00000010318	A1CF	100	79.832	ENSXETG00000006611	a1cf	100	79.832	Xenopus_tropicalis
ENSPSIG00000010318	A1CF	100	77.076	ENSXCOG00000003302	a1cf	100	78.239	Xiphophorus_couchianus
ENSPSIG00000010318	A1CF	100	76.066	ENSXMAG00000016703	a1cf	100	77.213	Xiphophorus_maculatus