EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000011229 (Gene tree)
Gene ID: 102459112
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 7612 bases
Position: chrJH205799.1:9649873-9657484
Accession: 102459112
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000012441	zf-CCCH	PF00642.24	4.9e-20	1	2
ENSPSIP00000012441	zf-CCCH	PF00642.24	4.9e-20	2	2
ENSPSIP00000012441	zf-CCHC	PF00098.23	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000012502	CPSF4-201	656	XM_006112949	ENSPSIP00000012441	216 (aa)	XP_025034896	K7FWN1

Gene Model

Click here to download ENSPSIG00000011229's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000011229's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000011229	CPSF4	100	58.986	ENSPSIG00000018198	-	99	57.407

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000011229	CPSF4	100	95.370	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSPSIG00000011229	CPSF4	84	73.077	ENSAPOG00000004921	cpsf4	100	73.077	Acanthochromis_polyacanthus
ENSPSIG00000011229	CPSF4	100	94.907	ENSAMEG00000006252	CPSF4	80	94.907	Ailuropoda_melanoleuca
ENSPSIG00000011229	CPSF4	100	76.959	ENSACIG00000009248	cpsf4	78	74.194	Amphilophus_citrinellus
ENSPSIG00000011229	CPSF4	100	83.871	ENSAOCG00000019616	cpsf4	80	83.871	Amphiprion_ocellaris
ENSPSIG00000011229	CPSF4	100	83.871	ENSAPEG00000011679	cpsf4	80	83.871	Amphiprion_percula
ENSPSIG00000011229	CPSF4	100	82.648	ENSATEG00000007010	cpsf4	80	79.909	Anabas_testudineus
ENSPSIG00000011229	CPSF4	100	96.759	ENSACAG00000012941	CPSF4	72	96.759	Anolis_carolinensis
ENSPSIG00000011229	CPSF4	100	95.370	ENSANAG00000021360	CPSF4	80	95.370	Aotus_nancymaae
ENSPSIG00000011229	CPSF4	100	82.488	ENSACLG00000010374	cpsf4	80	82.488	Astatotilapia_calliptera
ENSPSIG00000011229	CPSF4	100	82.569	ENSAMXG00000031647	cpsf4	80	80.275	Astyanax_mexicanus
ENSPSIG00000011229	CPSF4	100	80.093	ENSBTAG00000002090	CPSF4	78	81.019	Bos_taurus
ENSPSIG00000011229	CPSF4	100	95.370	ENSCJAG00000015826	CPSF4	80	95.370	Callithrix_jacchus
ENSPSIG00000011229	CPSF4	100	94.907	ENSCAFG00000015036	CPSF4	80	94.907	Canis_familiaris
ENSPSIG00000011229	CPSF4	100	94.907	ENSCAFG00020014462	CPSF4	82	94.907	Canis_lupus_dingo
ENSPSIG00000011229	CPSF4	100	94.907	ENSCHIG00000014313	CPSF4	80	94.907	Capra_hircus
ENSPSIG00000011229	CPSF4	100	81.481	ENSTSYG00000005712	-	78	81.944	Carlito_syrichta
ENSPSIG00000011229	CPSF4	100	76.498	ENSTSYG00000014604	-	78	74.194	Carlito_syrichta
ENSPSIG00000011229	CPSF4	100	77.880	ENSTSYG00000008195	-	84	75.576	Carlito_syrichta
ENSPSIG00000011229	CPSF4	100	94.907	ENSCAPG00000013881	CPSF4	86	94.907	Cavia_aperea
ENSPSIG00000011229	CPSF4	100	81.019	ENSCPOG00000001783	CPSF4	78	81.481	Cavia_porcellus
ENSPSIG00000011229	CPSF4	100	95.370	ENSCCAG00000028291	CPSF4	80	95.370	Cebus_capucinus
ENSPSIG00000011229	CPSF4	100	95.370	ENSCATG00000038440	CPSF4	80	95.370	Cercocebus_atys
ENSPSIG00000011229	CPSF4	100	94.907	ENSCLAG00000007050	CPSF4	80	94.907	Chinchilla_lanigera
ENSPSIG00000011229	CPSF4	100	95.370	ENSCSAG00000017795	CPSF4	80	95.370	Chlorocebus_sabaeus
ENSPSIG00000011229	CPSF4	100	99.537	ENSCPBG00000020869	CPSF4	100	99.537	Chrysemys_picta_bellii
ENSPSIG00000011229	CPSF4	52	88.393	ENSCPBG00000010269	-	68	87.611	Chrysemys_picta_bellii
ENSPSIG00000011229	CPSF4	95	54.589	ENSCING00000021080	-	76	54.589	Ciona_intestinalis
ENSPSIG00000011229	CPSF4	95	51.965	ENSCSAVG00000011469	-	78	51.101	Ciona_savignyi
ENSPSIG00000011229	CPSF4	100	95.370	ENSCANG00000019384	CPSF4	80	95.370	Colobus_angolensis_palliatus
ENSPSIG00000011229	CPSF4	100	81.019	ENSCGRG00001024184	Cpsf4	78	81.481	Cricetulus_griseus_chok1gshd
ENSPSIG00000011229	CPSF4	100	94.907	ENSCGRG00000013892	Cpsf4	80	94.907	Cricetulus_griseus_crigri
ENSPSIG00000011229	CPSF4	100	82.949	ENSCSEG00000019055	cpsf4	80	80.645	Cynoglossus_semilaevis
ENSPSIG00000011229	CPSF4	100	82.488	ENSCVAG00000016528	cpsf4	80	82.488	Cyprinodon_variegatus
ENSPSIG00000011229	CPSF4	100	84.404	ENSDARG00000020217	cpsf4	80	84.404	Danio_rerio
ENSPSIG00000011229	CPSF4	100	95.370	ENSDNOG00000006344	CPSF4	80	95.370	Dasypus_novemcinctus
ENSPSIG00000011229	CPSF4	100	94.907	ENSDORG00000000742	Cpsf4	99	94.907	Dipodomys_ordii
ENSPSIG00000011229	CPSF4	99	54.733	FBgn0015621	Clp	80	55.508	Drosophila_melanogaster
ENSPSIG00000011229	CPSF4	62	98.214	ENSETEG00000002608	CPSF4	50	98.214	Echinops_telfairi
ENSPSIG00000011229	CPSF4	99	65.728	ENSEBUG00000012552	cpsf4	76	65.728	Eptatretus_burgeri
ENSPSIG00000011229	CPSF4	100	81.019	ENSEASG00005002487	CPSF4	78	81.481	Equus_asinus_asinus
ENSPSIG00000011229	CPSF4	100	94.907	ENSECAG00000007525	CPSF4	80	94.907	Equus_caballus
ENSPSIG00000011229	CPSF4	70	100.000	ENSEEUG00000002158	CPSF4	65	100.000	Erinaceus_europaeus
ENSPSIG00000011229	CPSF4	100	80.995	ENSELUG00000011481	cpsf4	81	79.186	Esox_lucius
ENSPSIG00000011229	CPSF4	100	94.907	ENSFCAG00000015070	CPSF4	80	94.907	Felis_catus
ENSPSIG00000011229	CPSF4	100	86.111	ENSFALG00000013799	CPSF4	78	86.111	Ficedula_albicollis
ENSPSIG00000011229	CPSF4	100	94.907	ENSFDAG00000014092	CPSF4	89	94.907	Fukomys_damarensis
ENSPSIG00000011229	CPSF4	100	81.567	ENSFHEG00000010880	cpsf4	80	81.567	Fundulus_heteroclitus
ENSPSIG00000011229	CPSF4	100	76.389	ENSGMOG00000002330	cpsf4	79	73.973	Gadus_morhua
ENSPSIG00000011229	CPSF4	85	38.342	ENSGALG00000004441	-	93	37.173	Gallus_gallus
ENSPSIG00000011229	CPSF4	100	85.185	ENSGALG00000004714	CPSF4	78	85.185	Gallus_gallus
ENSPSIG00000011229	CPSF4	100	81.567	ENSGAFG00000010580	cpsf4	80	81.567	Gambusia_affinis
ENSPSIG00000011229	CPSF4	100	77.880	ENSGACG00000007792	cpsf4	78	75.463	Gasterosteus_aculeatus
ENSPSIG00000011229	CPSF4	100	99.537	ENSGAGG00000021835	CPSF4	80	99.537	Gopherus_agassizii
ENSPSIG00000011229	CPSF4	60	81.395	ENSGAGG00000020579	-	63	88.393	Gopherus_agassizii
ENSPSIG00000011229	CPSF4	100	95.370	ENSGGOG00000015131	CPSF4	80	95.370	Gorilla_gorilla
ENSPSIG00000011229	CPSF4	100	82.488	ENSHBUG00000013699	cpsf4	80	82.488	Haplochromis_burtoni
ENSPSIG00000011229	CPSF4	100	93.578	ENSHGLG00000017150	CPSF4	80	93.578	Heterocephalus_glaber_female
ENSPSIG00000011229	CPSF4	57	54.032	ENSHGLG00100017302	-	69	43.519	Heterocephalus_glaber_male
ENSPSIG00000011229	CPSF4	99	93.519	ENSHGLG00100009215	-	93	93.519	Heterocephalus_glaber_male
ENSPSIG00000011229	CPSF4	100	78.341	ENSHCOG00000004397	cpsf4	80	78.341	Hippocampus_comes
ENSPSIG00000011229	CPSF4	100	83.486	ENSIPUG00000017147	cpsf4	80	83.486	Ictalurus_punctatus
ENSPSIG00000011229	CPSF4	100	94.907	ENSSTOG00000001688	CPSF4	80	94.907	Ictidomys_tridecemlineatus
ENSPSIG00000011229	CPSF4	100	94.907	ENSJJAG00000019426	Cpsf4	80	94.907	Jaculus_jaculus
ENSPSIG00000011229	CPSF4	100	81.651	ENSKMAG00000015642	cpsf4	80	81.651	Kryptolebias_marmoratus
ENSPSIG00000011229	CPSF4	100	58.986	ENSLACG00000018470	-	78	58.986	Latimeria_chalumnae
ENSPSIG00000011229	CPSF4	100	87.097	ENSLACG00000010938	CPSF4	80	87.097	Latimeria_chalumnae
ENSPSIG00000011229	CPSF4	100	88.426	ENSLOCG00000004814	cpsf4	80	88.426	Lepisosteus_oculatus
ENSPSIG00000011229	CPSF4	100	94.444	ENSLAFG00000000159	CPSF4	80	94.444	Loxodonta_africana
ENSPSIG00000011229	CPSF4	100	95.370	ENSMFAG00000001462	CPSF4	100	81.944	Macaca_fascicularis
ENSPSIG00000011229	CPSF4	100	95.370	ENSMMUG00000019191	CPSF4	80	95.370	Macaca_mulatta
ENSPSIG00000011229	CPSF4	100	95.370	ENSMNEG00000032306	CPSF4	80	95.370	Macaca_nemestrina
ENSPSIG00000011229	CPSF4	100	95.370	ENSMLEG00000034721	CPSF4	80	95.370	Mandrillus_leucophaeus
ENSPSIG00000011229	CPSF4	100	82.488	ENSMAMG00000006244	cpsf4	80	80.909	Mastacembelus_armatus
ENSPSIG00000011229	CPSF4	100	82.488	ENSMZEG00005007515	cpsf4	80	82.488	Maylandia_zebra
ENSPSIG00000011229	CPSF4	100	85.185	ENSMGAG00000004235	CPSF4	91	85.185	Meleagris_gallopavo
ENSPSIG00000011229	CPSF4	100	94.907	ENSMAUG00000021253	Cpsf4	80	94.907	Mesocricetus_auratus
ENSPSIG00000011229	CPSF4	100	94.907	ENSMICG00000017429	CPSF4	80	94.907	Microcebus_murinus
ENSPSIG00000011229	CPSF4	100	94.907	ENSMOCG00000014901	Cpsf4	80	94.907	Microtus_ochrogaster
ENSPSIG00000011229	CPSF4	100	82.949	ENSMMOG00000001813	cpsf4	67	97.321	Mola_mola
ENSPSIG00000011229	CPSF4	100	97.685	ENSMODG00000001367	CPSF4	80	97.685	Monodelphis_domestica
ENSPSIG00000011229	CPSF4	100	80.645	ENSMALG00000012611	cpsf4	85	77.880	Monopterus_albus
ENSPSIG00000011229	CPSF4	100	94.907	MGP_CAROLIEiJ_G0028012	Cpsf4	80	94.907	Mus_caroli
ENSPSIG00000011229	CPSF4	100	94.907	ENSMUSG00000029625	Cpsf4	80	94.907	Mus_musculus
ENSPSIG00000011229	CPSF4	100	94.907	MGP_PahariEiJ_G0024581	Cpsf4	80	94.907	Mus_pahari
ENSPSIG00000011229	CPSF4	100	94.907	MGP_SPRETEiJ_G0029013	Cpsf4	80	94.907	Mus_spretus
ENSPSIG00000011229	CPSF4	100	94.907	ENSMPUG00000016508	CPSF4	80	94.907	Mustela_putorius_furo
ENSPSIG00000011229	CPSF4	100	80.093	ENSMLUG00000010980	CPSF4	91	81.019	Myotis_lucifugus
ENSPSIG00000011229	CPSF4	100	94.907	ENSNGAG00000001567	Cpsf4	80	94.907	Nannospalax_galili
ENSPSIG00000011229	CPSF4	100	82.488	ENSNBRG00000003943	cpsf4	86	82.488	Neolamprologus_brichardi
ENSPSIG00000011229	CPSF4	100	91.667	ENSNLEG00000011074	CPSF4	80	91.667	Nomascus_leucogenys
ENSPSIG00000011229	CPSF4	100	97.685	ENSMEUG00000006955	CPSF4	80	97.685	Notamacropus_eugenii
ENSPSIG00000011229	CPSF4	100	94.907	ENSOPRG00000013663	CPSF4	80	94.907	Ochotona_princeps
ENSPSIG00000011229	CPSF4	100	70.370	ENSODEG00000009779	-	77	70.370	Octodon_degus
ENSPSIG00000011229	CPSF4	100	94.907	ENSODEG00000011181	-	80	94.907	Octodon_degus
ENSPSIG00000011229	CPSF4	99	75.234	ENSODEG00000018283	-	76	73.364	Octodon_degus
ENSPSIG00000011229	CPSF4	100	82.488	ENSONIG00000008495	cpsf4	80	82.488	Oreochromis_niloticus
ENSPSIG00000011229	CPSF4	100	54.464	ENSOANG00000009568	-	82	52.679	Ornithorhynchus_anatinus
ENSPSIG00000011229	CPSF4	100	95.833	ENSOANG00000007729	CPSF4	92	95.833	Ornithorhynchus_anatinus
ENSPSIG00000011229	CPSF4	100	95.370	ENSOCUG00000002437	CPSF4	56	95.370	Oryctolagus_cuniculus
ENSPSIG00000011229	CPSF4	100	81.944	ENSORLG00000022798	cpsf4	80	81.944	Oryzias_latipes
ENSPSIG00000011229	CPSF4	100	81.944	ENSORLG00020008548	cpsf4	80	81.944	Oryzias_latipes_hni
ENSPSIG00000011229	CPSF4	100	81.944	ENSORLG00015019575	cpsf4	80	81.944	Oryzias_latipes_hsok
ENSPSIG00000011229	CPSF4	100	80.556	ENSOMEG00000005176	cpsf4	80	80.556	Oryzias_melastigma
ENSPSIG00000011229	CPSF4	100	94.907	ENSOGAG00000010884	CPSF4	80	94.907	Otolemur_garnettii
ENSPSIG00000011229	CPSF4	98	84.722	ENSOARG00000018668	CPSF4	79	83.796	Ovis_aries
ENSPSIG00000011229	CPSF4	100	95.833	ENSPPAG00000043355	CPSF4	80	95.833	Pan_paniscus
ENSPSIG00000011229	CPSF4	100	94.907	ENSPPRG00000003134	CPSF4	80	94.907	Panthera_pardus
ENSPSIG00000011229	CPSF4	100	94.907	ENSPTIG00000005604	CPSF4	80	94.907	Panthera_tigris_altaica
ENSPSIG00000011229	CPSF4	100	95.833	ENSPTRG00000019453	CPSF4	80	95.833	Pan_troglodytes
ENSPSIG00000011229	CPSF4	100	95.370	ENSPANG00000023123	CPSF4	80	95.370	Papio_anubis
ENSPSIG00000011229	CPSF4	100	83.258	ENSPKIG00000014278	cpsf4	81	83.258	Paramormyrops_kingsleyae
ENSPSIG00000011229	CPSF4	100	76.389	ENSPMGG00000017735	cpsf4	80	73.611	Periophthalmus_magnuspinnatus
ENSPSIG00000011229	CPSF4	100	94.907	ENSPEMG00000004508	Cpsf4	80	94.907	Peromyscus_maniculatus_bairdii
ENSPSIG00000011229	CPSF4	100	97.685	ENSPCIG00000024776	CPSF4	80	97.685	Phascolarctos_cinereus
ENSPSIG00000011229	CPSF4	100	81.567	ENSPFOG00000014912	cpsf4	80	81.567	Poecilia_formosa
ENSPSIG00000011229	CPSF4	100	72.685	ENSPLAG00000009599	cpsf4	78	72.685	Poecilia_latipinna
ENSPSIG00000011229	CPSF4	100	81.567	ENSPMEG00000009790	cpsf4	80	81.567	Poecilia_mexicana
ENSPSIG00000011229	CPSF4	100	80.645	ENSPREG00000018166	cpsf4	80	76.852	Poecilia_reticulata
ENSPSIG00000011229	CPSF4	100	95.370	ENSPPYG00000017378	CPSF4	92	95.370	Pongo_abelii
ENSPSIG00000011229	CPSF4	100	94.444	ENSPCAG00000001892	CPSF4	80	94.444	Procavia_capensis
ENSPSIG00000011229	CPSF4	100	94.907	ENSPCOG00000012771	CPSF4	83	94.907	Propithecus_coquereli
ENSPSIG00000011229	CPSF4	100	94.907	ENSPVAG00000007531	CPSF4	80	94.907	Pteropus_vampyrus
ENSPSIG00000011229	CPSF4	100	82.488	ENSPNYG00000018559	cpsf4	80	82.488	Pundamilia_nyererei
ENSPSIG00000011229	CPSF4	100	84.332	ENSPNAG00000003736	cpsf4	80	84.332	Pygocentrus_nattereri
ENSPSIG00000011229	CPSF4	100	80.093	ENSRNOG00000000985	Cpsf4	78	81.019	Rattus_norvegicus
ENSPSIG00000011229	CPSF4	100	95.370	ENSRBIG00000033886	CPSF4	92	95.370	Rhinopithecus_bieti
ENSPSIG00000011229	CPSF4	100	84.259	ENSRROG00000040431	CPSF4	78	81.944	Rhinopithecus_roxellana
ENSPSIG00000011229	CPSF4	100	95.370	ENSSBOG00000020493	CPSF4	100	81.944	Saimiri_boliviensis_boliviensis
ENSPSIG00000011229	CPSF4	100	97.685	ENSSHAG00000011533	CPSF4	80	97.685	Sarcophilus_harrisii
ENSPSIG00000011229	CPSF4	100	84.753	ENSSFOG00015007883	cpsf4	81	85.650	Scleropages_formosus
ENSPSIG00000011229	CPSF4	100	76.852	ENSSMAG00000006374	cpsf4	78	74.537	Scophthalmus_maximus
ENSPSIG00000011229	CPSF4	100	82.028	ENSSDUG00000018887	cpsf4	80	79.263	Seriola_dumerili
ENSPSIG00000011229	CPSF4	100	82.028	ENSSLDG00000019078	cpsf4	80	79.724	Seriola_lalandi_dorsalis
ENSPSIG00000011229	CPSF4	100	94.907	ENSSARG00000012416	CPSF4	92	94.907	Sorex_araneus
ENSPSIG00000011229	CPSF4	95	55.610	ENSSPUG00000014803	-	73	55.610	Sphenodon_punctatus
ENSPSIG00000011229	CPSF4	100	95.833	ENSSPUG00000003549	CPSF4	80	95.833	Sphenodon_punctatus
ENSPSIG00000011229	CPSF4	100	77.315	ENSSPAG00000006174	cpsf4	78	74.074	Stegastes_partitus
ENSPSIG00000011229	CPSF4	100	83.796	ENSSSCG00000026896	CPSF4	78	81.481	Sus_scrofa
ENSPSIG00000011229	CPSF4	100	86.111	ENSTGUG00000007552	CPSF4	78	86.111	Taeniopygia_guttata
ENSPSIG00000011229	CPSF4	100	80.275	ENSTRUG00000024220	cpsf4	80	80.275	Takifugu_rubripes
ENSPSIG00000011229	CPSF4	100	79.358	ENSTNIG00000006265	cpsf4	80	81.193	Tetraodon_nigroviridis
ENSPSIG00000011229	CPSF4	100	84.722	ENSTBEG00000011406	CPSF4	92	84.722	Tupaia_belangeri
ENSPSIG00000011229	CPSF4	100	71.296	ENSTTRG00000003007	CPSF4	80	71.296	Tursiops_truncatus
ENSPSIG00000011229	CPSF4	90	78.351	ENSUAMG00000008051	CPSF4	65	79.381	Ursus_americanus
ENSPSIG00000011229	CPSF4	100	80.093	ENSUMAG00000009474	CPSF4	78	81.019	Ursus_maritimus
ENSPSIG00000011229	CPSF4	100	80.556	ENSVVUG00000008824	CPSF4	78	81.019	Vulpes_vulpes
ENSPSIG00000011229	CPSF4	100	88.938	ENSXETG00000009892	cpsf4	81	88.938	Xenopus_tropicalis
ENSPSIG00000011229	CPSF4	99	60.930	ENSXETG00000004641	cpsf4l	79	60.930	Xenopus_tropicalis
ENSPSIG00000011229	CPSF4	100	81.567	ENSXCOG00000016040	cpsf4	80	81.567	Xiphophorus_couchianus
ENSPSIG00000011229	CPSF4	100	81.567	ENSXMAG00000024670	cpsf4	80	81.567	Xiphophorus_maculatus