EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000011562 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 27749 bases
Position: chrJH206409.1:12060-39808
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000012875	zf-C2H2	PF00096.26	6.3e-30	1	5
ENSPSIP00000012875	zf-C2H2	PF00096.26	6.3e-30	2	5
ENSPSIP00000012875	zf-C2H2	PF00096.26	6.3e-30	3	5
ENSPSIP00000012875	zf-C2H2	PF00096.26	6.3e-30	4	5
ENSPSIP00000012875	zf-C2H2	PF00096.26	6.3e-30	5	5
ENSPSIP00000012877	zf-C2H2	PF00096.26	1.1e-23	1	4
ENSPSIP00000012877	zf-C2H2	PF00096.26	1.1e-23	2	4
ENSPSIP00000012877	zf-C2H2	PF00096.26	1.1e-23	3	4
ENSPSIP00000012877	zf-C2H2	PF00096.26	1.1e-23	4	4
ENSPSIP00000012875	zf-met	PF12874.7	2.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000012939	-	1053	-	ENSPSIP00000012877	350 (aa)	-	K7FXW7
ENSPSIT00000012937	-	1191	-	ENSPSIP00000012875	396 (aa)	-	K7FXW5

Gene Model

Click here to download ENSPSIG00000011562's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000011562's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000011562	-	84	40.278	ENSPSIG00000005603	-	65	40.278
ENSPSIG00000011562	-	91	33.511	ENSPSIG00000016247	-	53	35.119
ENSPSIG00000011562	-	85	30.350	ENSPSIG00000000760	-	91	30.350
ENSPSIG00000011562	-	57	34.395	ENSPSIG00000003607	SNAI1	58	34.395
ENSPSIG00000011562	-	85	33.636	ENSPSIG00000010328	-	72	33.636
ENSPSIG00000011562	-	85	30.769	ENSPSIG00000012859	ZBTB41	50	38.750
ENSPSIG00000011562	-	89	42.697	ENSPSIG00000005128	-	94	42.697
ENSPSIG00000011562	-	85	31.010	ENSPSIG00000015465	-	71	33.000
ENSPSIG00000011562	-	69	39.881	ENSPSIG00000000333	-	70	39.881
ENSPSIG00000011562	-	91	32.796	ENSPSIG00000004614	-	87	31.395
ENSPSIG00000011562	-	83	30.252	ENSPSIG00000004303	ZNF319	82	30.252
ENSPSIG00000011562	-	90	32.870	ENSPSIG00000005672	-	60	35.673
ENSPSIG00000011562	-	92	34.167	ENSPSIG00000015459	-	70	31.250
ENSPSIG00000011562	-	91	38.393	ENSPSIG00000010405	-	100	31.905
ENSPSIG00000011562	-	90	30.000	ENSPSIG00000001026	-	88	30.000
ENSPSIG00000011562	-	89	32.189	ENSPSIG00000009603	-	98	32.189
ENSPSIG00000011562	-	89	31.489	ENSPSIG00000008588	-	94	31.489
ENSPSIG00000011562	-	85	34.307	ENSPSIG00000003152	-	76	34.307
ENSPSIG00000011562	-	87	31.707	ENSPSIG00000016380	-	68	34.857
ENSPSIG00000011562	-	85	33.333	ENSPSIG00000002569	-	79	34.109
ENSPSIG00000011562	-	73	39.316	ENSPSIG00000000075	-	70	39.316
ENSPSIG00000011562	-	87	32.961	ENSPSIG00000013021	-	73	37.647
ENSPSIG00000011562	-	64	39.450	ENSPSIG00000006790	-	80	39.450
ENSPSIG00000011562	-	91	36.429	ENSPSIG00000012650	-	71	36.429
ENSPSIG00000011562	-	83	33.974	ENSPSIG00000000522	-	77	34.337
ENSPSIG00000011562	-	83	34.091	ENSPSIG00000015216	-	72	34.091
ENSPSIG00000011562	-	84	31.330	ENSPSIG00000004502	-	55	31.330
ENSPSIG00000011562	-	91	36.471	ENSPSIG00000009650	-	67	36.471
ENSPSIG00000011562	-	91	32.812	ENSPSIG00000012865	-	69	32.812
ENSPSIG00000011562	-	57	33.140	ENSPSIG00000004682	ZNF652	63	33.140
ENSPSIG00000011562	-	85	36.612	ENSPSIG00000001739	-	99	37.179
ENSPSIG00000011562	-	66	98.462	ENSPSIG00000016553	-	60	98.462
ENSPSIG00000011562	-	92	31.330	ENSPSIG00000013505	PRDM5	68	31.330
ENSPSIG00000011562	-	85	40.476	ENSPSIG00000000672	-	87	40.964
ENSPSIG00000011562	-	88	34.158	ENSPSIG00000010248	-	63	34.158
ENSPSIG00000011562	-	85	35.928	ENSPSIG00000004647	-	68	35.928
ENSPSIG00000011562	-	83	32.778	ENSPSIG00000006586	-	99	32.778
ENSPSIG00000011562	-	57	35.172	ENSPSIG00000016395	SNAI2	67	33.099
ENSPSIG00000011562	-	83	37.879	ENSPSIG00000012112	GFI1B	61	32.335
ENSPSIG00000011562	-	83	37.931	ENSPSIG00000009893	-	63	37.931

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000011562	-	100	96.571	ENSG00000100105	PATZ1	58	95.960	Homo_sapiens
ENSPSIG00000011562	-	100	73.214	ENSAPOG00000018447	patz1	70	68.214	Acanthochromis_polyacanthus
ENSPSIG00000011562	-	100	95.960	ENSAMEG00000007074	PATZ1	58	95.960	Ailuropoda_melanoleuca
ENSPSIG00000011562	-	100	74.107	ENSACIG00000016779	patz1	69	74.107	Amphilophus_citrinellus
ENSPSIG00000011562	-	100	62.924	ENSAPEG00000013354	patz1	64	62.924	Amphiprion_percula
ENSPSIG00000011562	-	100	75.587	ENSATEG00000011260	patz1	69	75.587	Anabas_testudineus
ENSPSIG00000011562	-	100	98.485	ENSAPLG00000003934	PATZ1	69	98.485	Anas_platyrhynchos
ENSPSIG00000011562	-	100	96.571	ENSANAG00000029603	PATZ1	58	95.960	Aotus_nancymaae
ENSPSIG00000011562	-	98	76.303	ENSAMXG00000002273	patz1	72	75.732	Astyanax_mexicanus
ENSPSIG00000011562	-	100	96.000	ENSBTAG00000005478	PATZ1	58	95.707	Bos_taurus
ENSPSIG00000011562	-	100	96.571	ENSCJAG00000010978	PATZ1	58	95.960	Callithrix_jacchus
ENSPSIG00000011562	-	100	96.286	ENSCAFG00000013087	PATZ1	58	95.960	Canis_familiaris
ENSPSIG00000011562	-	100	95.429	ENSCHIG00000020203	PATZ1	58	95.202	Capra_hircus
ENSPSIG00000011562	-	100	96.000	ENSTSYG00000033183	PATZ1	58	95.707	Carlito_syrichta
ENSPSIG00000011562	-	100	96.571	ENSCCAG00000028772	PATZ1	58	95.960	Cebus_capucinus
ENSPSIG00000011562	-	100	96.571	ENSCATG00000006101	PATZ1	58	95.960	Cercocebus_atys
ENSPSIG00000011562	-	100	99.495	ENSCPBG00000011277	PATZ1	58	99.495	Chrysemys_picta_bellii
ENSPSIG00000011562	-	100	96.571	ENSCANG00000024972	PATZ1	58	95.960	Colobus_angolensis_palliatus
ENSPSIG00000011562	-	100	92.857	ENSCGRG00001004071	Patz1	57	92.677	Cricetulus_griseus_chok1gshd
ENSPSIG00000011562	-	100	95.714	ENSCGRG00000004814	Patz1	62	95.202	Cricetulus_griseus_crigri
ENSPSIG00000011562	-	100	60.143	ENSCSEG00000001385	patz1	68	60.664	Cynoglossus_semilaevis
ENSPSIG00000011562	-	100	62.865	ENSCVAG00000007684	patz1	72	63.395	Cyprinodon_variegatus
ENSPSIG00000011562	-	99	77.251	ENSDARG00000076584	patz1	76	69.517	Danio_rerio
ENSPSIG00000011562	-	83	95.122	ENSDNOG00000003183	PATZ1	53	95.122	Dasypus_novemcinctus
ENSPSIG00000011562	-	100	96.571	ENSDORG00000023834	Patz1	58	96.212	Dipodomys_ordii
ENSPSIG00000011562	-	100	96.000	ENSECAG00000025030	PATZ1	58	95.707	Equus_caballus
ENSPSIG00000011562	-	100	74.222	ENSELUG00000002333	patz1	72	74.222	Esox_lucius
ENSPSIG00000011562	-	100	96.286	ENSFCAG00000030253	PATZ1	58	95.960	Felis_catus
ENSPSIG00000011562	-	100	98.232	ENSFALG00000007450	PATZ1	68	98.232	Ficedula_albicollis
ENSPSIG00000011562	-	100	90.176	ENSFDAG00000005614	PATZ1	60	90.176	Fukomys_damarensis
ENSPSIG00000011562	-	100	61.880	ENSFHEG00000014755	patz1	66	61.880	Fundulus_heteroclitus
ENSPSIG00000011562	-	97	59.233	ENSGMOG00000001062	patz1	61	59.472	Gadus_morhua
ENSPSIG00000011562	-	100	97.727	ENSGALG00000006934	PATZ1	57	97.727	Gallus_gallus
ENSPSIG00000011562	-	100	72.321	ENSGAFG00000010053	patz1	70	72.768	Gambusia_affinis
ENSPSIG00000011562	-	100	99.242	ENSGAGG00000003214	PATZ1	69	99.242	Gopherus_agassizii
ENSPSIG00000011562	-	100	96.571	ENSGGOG00000017171	PATZ1	58	95.960	Gorilla_gorilla
ENSPSIG00000011562	-	99	75.701	ENSHCOG00000017644	patz1	51	75.701	Hippocampus_comes
ENSPSIG00000011562	-	99	71.831	ENSIPUG00000017653	patz1	65	71.831	Ictalurus_punctatus
ENSPSIG00000011562	-	100	96.286	ENSSTOG00000020707	PATZ1	58	95.707	Ictidomys_tridecemlineatus
ENSPSIG00000011562	-	100	94.286	ENSJJAG00000015259	Patz1	58	94.192	Jaculus_jaculus
ENSPSIG00000011562	-	100	59.474	ENSKMAG00000008157	patz1	66	59.635	Kryptolebias_marmoratus
ENSPSIG00000011562	-	100	95.455	ENSLAFG00000002317	PATZ1	59	95.455	Loxodonta_africana
ENSPSIG00000011562	-	100	96.571	ENSMFAG00000040968	PATZ1	58	95.960	Macaca_fascicularis
ENSPSIG00000011562	-	100	96.571	ENSMNEG00000037588	PATZ1	58	95.960	Macaca_nemestrina
ENSPSIG00000011562	-	100	96.571	ENSMLEG00000030938	PATZ1	58	95.960	Mandrillus_leucophaeus
ENSPSIG00000011562	-	100	62.402	ENSMAMG00000023652	patz1	62	60.321	Mastacembelus_armatus
ENSPSIG00000011562	-	100	97.727	ENSMGAG00000008439	PATZ1	71	97.727	Meleagris_gallopavo
ENSPSIG00000011562	-	100	96.000	ENSMAUG00000004129	Patz1	58	95.455	Mesocricetus_auratus
ENSPSIG00000011562	-	100	96.286	ENSMICG00000005430	PATZ1	58	95.960	Microcebus_murinus
ENSPSIG00000011562	-	100	96.000	ENSMOCG00000014488	Patz1	58	95.455	Microtus_ochrogaster
ENSPSIG00000011562	-	100	74.429	ENSMMOG00000021679	patz1	76	74.429	Mola_mola
ENSPSIG00000011562	-	100	62.141	ENSMALG00000021172	patz1	67	62.141	Monopterus_albus
ENSPSIG00000011562	-	100	95.714	MGP_CAROLIEiJ_G0016007	Patz1	58	95.202	Mus_caroli
ENSPSIG00000011562	-	100	96.000	ENSMUSG00000020453	Patz1	58	95.455	Mus_musculus
ENSPSIG00000011562	-	100	96.000	MGP_PahariEiJ_G0016884	Patz1	58	95.455	Mus_pahari
ENSPSIG00000011562	-	100	96.000	MGP_SPRETEiJ_G0016846	Patz1	58	95.455	Mus_spretus
ENSPSIG00000011562	-	100	96.000	ENSMLUG00000009942	PATZ1	58	95.707	Myotis_lucifugus
ENSPSIG00000011562	-	100	96.286	ENSNGAG00000010268	Patz1	58	95.707	Nannospalax_galili
ENSPSIG00000011562	-	100	73.661	ENSNBRG00000016032	patz1	69	73.661	Neolamprologus_brichardi
ENSPSIG00000011562	-	100	94.949	ENSMEUG00000016293	PATZ1	85	94.949	Notamacropus_eugenii
ENSPSIG00000011562	-	100	96.571	ENSODEG00000003589	PATZ1	58	96.212	Octodon_degus
ENSPSIG00000011562	-	100	63.636	ENSONIG00000004248	patz1	64	63.636	Oreochromis_niloticus
ENSPSIG00000011562	-	100	96.717	ENSOANG00000014654	PATZ1	58	96.717	Ornithorhynchus_anatinus
ENSPSIG00000011562	-	100	63.662	ENSORLG00020010937	patz1	63	61.518	Oryzias_latipes_hni
ENSPSIG00000011562	-	100	61.518	ENSORLG00015007396	patz1	63	61.518	Oryzias_latipes_hsok
ENSPSIG00000011562	-	89	76.056	ENSOMEG00000006636	patz1	71	76.056	Oryzias_melastigma
ENSPSIG00000011562	-	100	95.707	ENSOGAG00000027905	PATZ1	58	95.707	Otolemur_garnettii
ENSPSIG00000011562	-	100	96.571	ENSPPAG00000033227	PATZ1	58	95.960	Pan_paniscus
ENSPSIG00000011562	-	100	96.286	ENSPPRG00000001573	PATZ1	58	95.960	Panthera_pardus
ENSPSIG00000011562	-	100	95.960	ENSPTIG00000007937	PATZ1	61	95.960	Panthera_tigris_altaica
ENSPSIG00000011562	-	100	96.571	ENSPTRG00000014268	PATZ1	58	95.960	Pan_troglodytes
ENSPSIG00000011562	-	100	96.571	ENSPANG00000006821	PATZ1	58	95.960	Papio_anubis
ENSPSIG00000011562	-	99	70.588	ENSPKIG00000019584	patz1	66	70.588	Paramormyrops_kingsleyae
ENSPSIG00000011562	-	100	62.774	ENSPMGG00000010196	patz1	61	62.774	Periophthalmus_magnuspinnatus
ENSPSIG00000011562	-	100	96.286	ENSPEMG00000005321	Patz1	58	95.455	Peromyscus_maniculatus_bairdii
ENSPSIG00000011562	-	100	62.857	ENSPLAG00000010425	patz1	74	59.542	Poecilia_latipinna
ENSPSIG00000011562	-	100	63.281	ENSPMEG00000000255	patz1	70	66.275	Poecilia_mexicana
ENSPSIG00000011562	-	100	61.305	ENSPREG00000002440	patz1	61	60.748	Poecilia_reticulata
ENSPSIG00000011562	-	100	95.707	ENSPPYG00000011732	PATZ1	58	95.707	Pongo_abelii
ENSPSIG00000011562	-	100	96.000	ENSPCOG00000019729	PATZ1	58	95.707	Propithecus_coquereli
ENSPSIG00000011562	-	100	95.960	ENSPVAG00000001749	PATZ1	58	95.960	Pteropus_vampyrus
ENSPSIG00000011562	-	100	64.029	ENSPNYG00000013542	patz1	64	63.896	Pundamilia_nyererei
ENSPSIG00000011562	-	99	64.183	ENSPNAG00000017222	patz1	80	57.933	Pygocentrus_nattereri
ENSPSIG00000011562	-	100	96.571	ENSRBIG00000044231	PATZ1	58	95.960	Rhinopithecus_bieti
ENSPSIG00000011562	-	100	96.571	ENSRROG00000037155	PATZ1	58	95.960	Rhinopithecus_roxellana
ENSPSIG00000011562	-	100	96.571	ENSSBOG00000003894	PATZ1	58	95.960	Saimiri_boliviensis_boliviensis
ENSPSIG00000011562	-	99	88.462	ENSSFOG00015013244	patz1	59	88.462	Scleropages_formosus
ENSPSIG00000011562	-	87	82.840	ENSSMAG00000020844	patz1	69	75.225	Scophthalmus_maximus
ENSPSIG00000011562	-	100	98.232	ENSSPUG00000015298	PATZ1	57	98.232	Sphenodon_punctatus
ENSPSIG00000011562	-	100	95.429	ENSSSCG00000010027	PATZ1	68	95.202	Sus_scrofa
ENSPSIG00000011562	-	99	62.150	ENSTRUG00000015366	patz1	74	73.303	Takifugu_rubripes
ENSPSIG00000011562	-	100	95.960	ENSTTRG00000010279	PATZ1	58	95.960	Tursiops_truncatus
ENSPSIG00000011562	-	100	96.286	ENSUAMG00000015014	PATZ1	55	96.286	Ursus_americanus
ENSPSIG00000011562	-	100	81.407	ENSXETG00000004190	patz1	61	81.407	Xenopus_tropicalis
ENSPSIG00000011562	-	100	62.402	ENSXMAG00000015531	patz1	70	73.469	Xiphophorus_maculatus