EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000011679 (Gene tree)
Gene ID: 102462048
Gene Symbol: -
Alias: -
Full Name: scaffold attachment factor B1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 30130 bases
Position: chrJH204952.1:231632-261761
Accession: 102462048
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000013122	RRM_1	PF00076.22	6.5e-14	1	1
ENSPSIP00000013115	RRM_1	PF00076.22	7.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000013178	-	3033	-	ENSPSIP00000013115	938 (aa)	-	K7FYK5
ENSPSIT00000013185	-	5992	XM_006110526	ENSPSIP00000013122	880 (aa)	-	K7FYL2

Gene Model

Click here to download ENSPSIG00000011679's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000011679's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000011679	-	100	78.989	ENSPSIG00000009367	-	100	77.239
ENSPSIG00000011679	-	82	37.451	ENSPSIG00000005489	SLTM	82	34.365

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000011679	-	100	63.585	ENSG00000160633	SAFB	100	62.211	Homo_sapiens
ENSPSIG00000011679	-	92	50.422	ENSAPOG00000022508	safb	99	47.053	Acanthochromis_polyacanthus
ENSPSIG00000011679	-	70	59.181	ENSAMEG00000012254	SAFB	100	62.091	Ailuropoda_melanoleuca
ENSPSIG00000011679	-	97	46.355	ENSACIG00000006247	safb	99	44.143	Amphilophus_citrinellus
ENSPSIG00000011679	-	95	48.775	ENSAOCG00000006308	safb	99	47.124	Amphiprion_ocellaris
ENSPSIG00000011679	-	92	50.242	ENSAPEG00000023342	safb	99	46.788	Amphiprion_percula
ENSPSIG00000011679	-	98	48.373	ENSATEG00000004998	safb	99	46.915	Anabas_testudineus
ENSPSIG00000011679	-	99	74.659	ENSAPLG00000005780	-	100	74.659	Anas_platyrhynchos
ENSPSIG00000011679	-	96	82.290	ENSAPLG00000006355	-	100	81.818	Anas_platyrhynchos
ENSPSIG00000011679	-	83	61.200	ENSACAG00000016893	-	96	59.947	Anolis_carolinensis
ENSPSIG00000011679	-	100	63.585	ENSANAG00000028821	SAFB	100	62.211	Aotus_nancymaae
ENSPSIG00000011679	-	98	48.249	ENSACLG00000001926	safb	98	47.312	Astatotilapia_calliptera
ENSPSIG00000011679	-	96	49.592	ENSAMXG00000018154	safb	97	47.198	Astyanax_mexicanus
ENSPSIG00000011679	-	100	62.683	ENSBTAG00000007875	SAFB	100	60.947	Bos_taurus
ENSPSIG00000011679	-	82	67.949	ENSCJAG00000017081	SAFB	99	66.250	Callithrix_jacchus
ENSPSIG00000011679	-	99	63.688	ENSCAFG00000018803	SAFB	87	62.632	Canis_familiaris
ENSPSIG00000011679	-	100	63.585	ENSCAFG00020018943	SAFB	100	62.632	Canis_lupus_dingo
ENSPSIG00000011679	-	100	62.458	ENSCHIG00000007262	SAFB	100	60.737	Capra_hircus
ENSPSIG00000011679	-	63	55.098	ENSTSYG00000001851	-	100	54.919	Carlito_syrichta
ENSPSIG00000011679	-	86	60.396	ENSCAPG00000012121	SAFB	97	60.396	Cavia_aperea
ENSPSIG00000011679	-	64	58.136	ENSCPOG00000026322	SAFB	100	59.404	Cavia_porcellus
ENSPSIG00000011679	-	100	63.585	ENSCCAG00000020193	SAFB	100	61.895	Cebus_capucinus
ENSPSIG00000011679	-	100	63.585	ENSCATG00000029994	SAFB	100	62.211	Cercocebus_atys
ENSPSIG00000011679	-	100	62.389	ENSCLAG00000007734	SAFB	100	59.669	Chinchilla_lanigera
ENSPSIG00000011679	-	100	63.698	ENSCSAG00000009949	SAFB	100	62.316	Chlorocebus_sabaeus
ENSPSIG00000011679	-	87	56.186	ENSCHOG00000003208	SAFB	88	56.555	Choloepus_hoffmanni
ENSPSIG00000011679	-	98	78.613	ENSCPBG00000010928	-	100	78.728	Chrysemys_picta_bellii
ENSPSIG00000011679	-	98	89.718	ENSCPBG00000010936	-	100	89.718	Chrysemys_picta_bellii
ENSPSIG00000011679	-	99	59.774	ENSCANG00000019754	-	99	57.550	Colobus_angolensis_palliatus
ENSPSIG00000011679	-	95	64.216	ENSCANG00000004774	-	99	64.216	Colobus_angolensis_palliatus
ENSPSIG00000011679	-	64	56.537	ENSCGRG00001002254	Safb	100	57.814	Cricetulus_griseus_chok1gshd
ENSPSIG00000011679	-	60	53.541	ENSCGRG00000011529	Safb	96	57.395	Cricetulus_griseus_crigri
ENSPSIG00000011679	-	97	44.872	ENSCSEG00000019870	safb	99	42.345	Cynoglossus_semilaevis
ENSPSIG00000011679	-	97	44.084	ENSCVAG00000002226	safb	98	41.991	Cyprinodon_variegatus
ENSPSIG00000011679	-	94	48.101	ENSDARG00000020467	safb	97	46.349	Danio_rerio
ENSPSIG00000011679	-	99	63.390	ENSDNOG00000015746	SAFB	96	64.611	Dasypus_novemcinctus
ENSPSIG00000011679	-	64	59.067	ENSDORG00000016200	Safb	100	56.877	Dipodomys_ordii
ENSPSIG00000011679	-	76	59.441	ENSETEG00000018679	SAFB	88	59.441	Echinops_telfairi
ENSPSIG00000011679	-	99	60.473	ENSEASG00005023019	SAFB	100	59.791	Equus_asinus_asinus
ENSPSIG00000011679	-	87	62.484	ENSECAG00000018659	SAFB	89	60.737	Equus_caballus
ENSPSIG00000011679	-	97	48.980	ENSELUG00000022327	safb	99	47.345	Esox_lucius
ENSPSIG00000011679	-	100	63.698	ENSFCAG00000011835	SAFB	100	62.211	Felis_catus
ENSPSIG00000011679	-	100	74.548	ENSFALG00000013882	-	92	71.882	Ficedula_albicollis
ENSPSIG00000011679	-	97	79.886	ENSFALG00000013881	-	100	79.886	Ficedula_albicollis
ENSPSIG00000011679	-	95	59.606	ENSFDAG00000020306	SAFB	99	59.606	Fukomys_damarensis
ENSPSIG00000011679	-	79	53.488	ENSFHEG00000004219	safb	98	42.950	Fundulus_heteroclitus
ENSPSIG00000011679	-	98	45.201	ENSGMOG00000014280	safb	98	45.416	Gadus_morhua
ENSPSIG00000011679	-	99	80.599	ENSGALG00000001948	-	100	78.364	Gallus_gallus
ENSPSIG00000011679	-	100	75.085	ENSGALG00000013365	-	100	72.140	Gallus_gallus
ENSPSIG00000011679	-	96	43.195	ENSGAFG00000016162	safb	98	42.040	Gambusia_affinis
ENSPSIG00000011679	-	98	48.391	ENSGACG00000011385	safb	99	46.568	Gasterosteus_aculeatus
ENSPSIG00000011679	-	95	90.382	ENSGAGG00000008424	-	100	88.095	Gopherus_agassizii
ENSPSIG00000011679	-	78	73.585	ENSGAGG00000017702	-	100	73.440	Gopherus_agassizii
ENSPSIG00000011679	-	100	63.698	ENSGGOG00000015109	SAFB	100	62.316	Gorilla_gorilla
ENSPSIG00000011679	-	98	45.195	ENSHBUG00000009218	safb	98	42.579	Haplochromis_burtoni
ENSPSIG00000011679	-	64	59.863	ENSHGLG00000015883	SAFB	100	60.145	Heterocephalus_glaber_female
ENSPSIG00000011679	-	87	65.686	ENSHGLG00100004228	SAFB	97	65.686	Heterocephalus_glaber_male
ENSPSIG00000011679	-	97	43.878	ENSHCOG00000001705	safb	99	44.207	Hippocampus_comes
ENSPSIG00000011679	-	68	57.521	ENSIPUG00000024869	safb2	99	47.996	Ictalurus_punctatus
ENSPSIG00000011679	-	63	61.217	ENSSTOG00000002783	SAFB	100	62.905	Ictidomys_tridecemlineatus
ENSPSIG00000011679	-	100	60.330	ENSJJAG00000009021	Safb	100	59.897	Jaculus_jaculus
ENSPSIG00000011679	-	92	49.699	ENSKMAG00000022308	safb	98	46.482	Kryptolebias_marmoratus
ENSPSIG00000011679	-	98	48.948	ENSLBEG00000006015	safb	98	48.243	Labrus_bergylta
ENSPSIG00000011679	-	99	57.780	ENSLACG00000018090	SAFB	100	53.950	Latimeria_chalumnae
ENSPSIG00000011679	-	98	52.836	ENSLOCG00000003613	safb	99	50.857	Lepisosteus_oculatus
ENSPSIG00000011679	-	99	63.492	ENSLAFG00000003840	SAFB	100	61.164	Loxodonta_africana
ENSPSIG00000011679	-	100	63.585	ENSMFAG00000003885	SAFB	100	61.895	Macaca_fascicularis
ENSPSIG00000011679	-	100	63.585	ENSMMUG00000017970	SAFB	100	62.211	Macaca_mulatta
ENSPSIG00000011679	-	100	60.767	ENSMNEG00000035637	SAFB	100	59.368	Macaca_nemestrina
ENSPSIG00000011679	-	99	60.023	ENSMLEG00000038637	SAFB	100	57.113	Mandrillus_leucophaeus
ENSPSIG00000011679	-	98	48.896	ENSMAMG00000003357	safb	91	47.071	Mastacembelus_armatus
ENSPSIG00000011679	-	98	48.606	ENSMZEG00005009120	safb	99	47.761	Maylandia_zebra
ENSPSIG00000011679	-	99	75.538	ENSMGAG00000001101	-	97	74.405	Meleagris_gallopavo
ENSPSIG00000011679	-	88	74.457	ENSMGAG00000001051	-	99	71.090	Meleagris_gallopavo
ENSPSIG00000011679	-	100	62.754	ENSMICG00000008739	-	100	61.117	Microcebus_murinus
ENSPSIG00000011679	-	85	53.284	ENSMICG00000046795	-	98	53.168	Microcebus_murinus
ENSPSIG00000011679	-	64	56.293	ENSMOCG00000014040	Safb	100	58.599	Microtus_ochrogaster
ENSPSIG00000011679	-	100	65.587	ENSMODG00000001236	SAFB	100	64.743	Monodelphis_domestica
ENSPSIG00000011679	-	98	48.884	ENSMALG00000020330	safb	99	47.363	Monopterus_albus
ENSPSIG00000011679	-	64	56.706	MGP_CAROLIEiJ_G0021780	Safb	100	58.642	Mus_caroli
ENSPSIG00000011679	-	64	56.826	ENSMUSG00000071054	Safb	100	58.642	Mus_musculus
ENSPSIG00000011679	-	100	58.462	MGP_PahariEiJ_G0020769	Safb	100	58.376	Mus_pahari
ENSPSIG00000011679	-	99	63.235	ENSMPUG00000006123	SAFB	94	62.211	Mustela_putorius_furo
ENSPSIG00000011679	-	100	64.374	ENSMLUG00000001081	SAFB	100	61.579	Myotis_lucifugus
ENSPSIG00000011679	-	100	56.593	ENSNGAG00000019882	Safb	100	56.526	Nannospalax_galili
ENSPSIG00000011679	-	99	62.401	ENSNLEG00000013551	SAFB	99	62.656	Nomascus_leucogenys
ENSPSIG00000011679	-	63	58.571	ENSOPRG00000011561	-	100	61.144	Ochotona_princeps
ENSPSIG00000011679	-	64	61.168	ENSODEG00000014838	SAFB	100	61.364	Octodon_degus
ENSPSIG00000011679	-	98	48.977	ENSONIG00000002318	safb	99	47.914	Oreochromis_niloticus
ENSPSIG00000011679	-	96	56.927	ENSOCUG00000014628	SAFB	100	54.171	Oryctolagus_cuniculus
ENSPSIG00000011679	-	92	47.215	ENSORLG00000016989	safb	98	43.830	Oryzias_latipes
ENSPSIG00000011679	-	96	43.566	ENSORLG00020000404	safb	93	41.395	Oryzias_latipes_hni
ENSPSIG00000011679	-	96	46.341	ENSORLG00015010733	safb	94	44.878	Oryzias_latipes_hsok
ENSPSIG00000011679	-	92	47.831	ENSOMEG00000009066	safb	98	45.119	Oryzias_melastigma
ENSPSIG00000011679	-	100	59.301	ENSOGAG00000027769	SAFB	100	59.496	Otolemur_garnettii
ENSPSIG00000011679	-	100	59.414	ENSOARG00000007662	-	100	56.095	Ovis_aries
ENSPSIG00000011679	-	83	60.192	ENSOARG00000007856	-	99	57.766	Ovis_aries
ENSPSIG00000011679	-	100	63.698	ENSPPAG00000035129	SAFB	100	62.000	Pan_paniscus
ENSPSIG00000011679	-	100	63.698	ENSPPRG00000017197	SAFB	100	62.211	Panthera_pardus
ENSPSIG00000011679	-	100	63.698	ENSPTRG00000010335	SAFB	100	62.000	Pan_troglodytes
ENSPSIG00000011679	-	100	63.585	ENSPANG00000007770	SAFB	100	61.895	Papio_anubis
ENSPSIG00000011679	-	99	49.079	ENSPKIG00000009902	safb	100	47.919	Paramormyrops_kingsleyae
ENSPSIG00000011679	-	64	56.314	ENSPEMG00000020428	Safb	100	58.617	Peromyscus_maniculatus_bairdii
ENSPSIG00000011679	-	63	65.171	ENSPCIG00000009504	-	99	68.738	Phascolarctos_cinereus
ENSPSIG00000011679	-	97	43.322	ENSPFOG00000007745	safb	99	43.894	Poecilia_formosa
ENSPSIG00000011679	-	96	44.070	ENSPLAG00000001614	safb	98	42.949	Poecilia_latipinna
ENSPSIG00000011679	-	97	43.337	ENSPMEG00000021023	safb	99	43.207	Poecilia_mexicana
ENSPSIG00000011679	-	96	43.488	ENSPREG00000012496	safb	98	42.737	Poecilia_reticulata
ENSPSIG00000011679	-	100	63.472	ENSPPYG00000009428	SAFB	100	62.105	Pongo_abelii
ENSPSIG00000011679	-	100	60.225	ENSPCAG00000006475	SAFB	100	57.922	Procavia_capensis
ENSPSIG00000011679	-	99	59.683	ENSPCOG00000014090	SAFB	99	57.372	Propithecus_coquereli
ENSPSIG00000011679	-	100	58.174	ENSPVAG00000004913	SAFB	100	56.632	Pteropus_vampyrus
ENSPSIG00000011679	-	97	48.927	ENSPNAG00000021838	safb	100	47.342	Pygocentrus_nattereri
ENSPSIG00000011679	-	64	56.271	ENSRNOG00000050543	Safb	100	58.171	Rattus_norvegicus
ENSPSIG00000011679	-	100	56.399	ENSRBIG00000042509	SAFB	100	55.180	Rhinopithecus_bieti
ENSPSIG00000011679	-	100	63.472	ENSRROG00000029278	SAFB	100	61.789	Rhinopithecus_roxellana
ENSPSIG00000011679	-	100	63.585	ENSSBOG00000026291	SAFB	100	62.211	Saimiri_boliviensis_boliviensis
ENSPSIG00000011679	-	98	50.664	ENSSFOG00015008156	safb	97	49.679	Scleropages_formosus
ENSPSIG00000011679	-	98	46.858	ENSSMAG00000009316	safb	98	47.436	Scophthalmus_maximus
ENSPSIG00000011679	-	98	46.014	ENSSDUG00000009652	safb	98	45.726	Seriola_dumerili
ENSPSIG00000011679	-	98	46.993	ENSSLDG00000001670	safb	99	46.772	Seriola_lalandi_dorsalis
ENSPSIG00000011679	-	63	60.106	ENSSARG00000010475	SAFB	100	60.294	Sorex_araneus
ENSPSIG00000011679	-	87	79.419	ENSSPUG00000009820	-	98	80.051	Sphenodon_punctatus
ENSPSIG00000011679	-	58	70.817	ENSSPUG00000009747	-	100	67.766	Sphenodon_punctatus
ENSPSIG00000011679	-	98	43.498	ENSSPAG00000015682	safb	98	43.889	Stegastes_partitus
ENSPSIG00000011679	-	100	63.920	ENSSSCG00000013522	SAFB	99	62.176	Sus_scrofa
ENSPSIG00000011679	-	93	83.599	ENSTGUG00000000489	-	100	80.682	Taeniopygia_guttata
ENSPSIG00000011679	-	96	73.857	ENSTGUG00000000502	-	99	69.670	Taeniopygia_guttata
ENSPSIG00000011679	-	92	48.029	ENSTRUG00000003567	safb	98	45.833	Takifugu_rubripes
ENSPSIG00000011679	-	91	45.150	ENSTNIG00000015470	safb	100	44.215	Tetraodon_nigroviridis
ENSPSIG00000011679	-	91	62.794	ENSTTRG00000013588	SAFB	85	62.423	Tursiops_truncatus
ENSPSIG00000011679	-	85	61.060	ENSUAMG00000024543	SAFB	100	57.673	Ursus_americanus
ENSPSIG00000011679	-	86	60.854	ENSUMAG00000009734	SAFB	96	58.054	Ursus_maritimus
ENSPSIG00000011679	-	76	66.972	ENSVPAG00000012043	SAFB	79	64.804	Vicugna_pacos
ENSPSIG00000011679	-	99	63.914	ENSVVUG00000013720	SAFB	87	62.842	Vulpes_vulpes
ENSPSIG00000011679	-	66	49.359	ENSXETG00000008755	safb	99	54.075	Xenopus_tropicalis
ENSPSIG00000011679	-	70	51.258	ENSXMAG00000003458	safb	98	43.516	Xiphophorus_maculatus