EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000012066 (Gene tree)
Gene ID: 102445392
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 31346 bases
Position: chrJH224648.1:2331814-2363159
Accession: 102445392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000013424	zf-C2H2	PF00096.26	8.6e-20	1	2
ENSPSIP00000013424	zf-C2H2	PF00096.26	8.6e-20	2	2
ENSPSIP00000013424	zf-met	PF12874.7	6.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000013487	PRDM4-201	1947	XM_006137977	ENSPSIP00000013424	648 (aa)	XP_006138039	K7FZG4

Gene Model

Click here to download ENSPSIG00000012066's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012066's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000012066	PRDM4	54	38.961	ENSPSIG00000006739	PRDM12	69	38.961
ENSPSIG00000012066	PRDM4	66	33.745	ENSPSIG00000006944	PRDM15	62	32.510
ENSPSIG00000012066	PRDM4	54	40.789	ENSPSIG00000013505	PRDM5	99	40.816

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012066	PRDM4	100	81.369	ENSG00000110851	PRDM4	95	94.366	Homo_sapiens
ENSPSIG00000012066	PRDM4	100	81.973	ENSAMEG00000016174	PRDM4	91	81.973	Ailuropoda_melanoleuca
ENSPSIG00000012066	PRDM4	100	91.713	ENSAPLG00000009846	PRDM4	89	91.713	Anas_platyrhynchos
ENSPSIG00000012066	PRDM4	100	81.559	ENSANAG00000024800	PRDM4	91	81.559	Aotus_nancymaae
ENSPSIG00000012066	PRDM4	100	82.510	ENSBTAG00000012999	PRDM4	91	82.510	Bos_taurus
ENSPSIG00000012066	PRDM4	100	87.845	ENSCJAG00000015261	PRDM4	88	87.845	Callithrix_jacchus
ENSPSIG00000012066	PRDM4	100	81.939	ENSCAFG00000001788	PRDM4	91	81.939	Canis_familiaris
ENSPSIG00000012066	PRDM4	100	81.939	ENSCAFG00020004916	PRDM4	91	81.939	Canis_lupus_dingo
ENSPSIG00000012066	PRDM4	100	82.319	ENSCHIG00000019409	PRDM4	91	82.319	Capra_hircus
ENSPSIG00000012066	PRDM4	100	82.319	ENSTSYG00000009248	PRDM4	91	82.319	Carlito_syrichta
ENSPSIG00000012066	PRDM4	100	76.994	ENSCAPG00000013937	PRDM4	90	76.438	Cavia_aperea
ENSPSIG00000012066	PRDM4	100	76.994	ENSCPOG00000022385	PRDM4	90	76.438	Cavia_porcellus
ENSPSIG00000012066	PRDM4	100	81.559	ENSCCAG00000036033	PRDM4	91	81.559	Cebus_capucinus
ENSPSIG00000012066	PRDM4	100	81.369	ENSCATG00000044797	PRDM4	91	81.369	Cercocebus_atys
ENSPSIG00000012066	PRDM4	100	79.227	ENSCLAG00000007545	PRDM4	91	79.227	Chinchilla_lanigera
ENSPSIG00000012066	PRDM4	100	81.559	ENSCSAG00000002896	PRDM4	91	81.559	Chlorocebus_sabaeus
ENSPSIG00000012066	PRDM4	87	92.453	ENSCHOG00000001744	PRDM4	82	92.453	Choloepus_hoffmanni
ENSPSIG00000012066	PRDM4	100	96.685	ENSCPBG00000023187	PRDM4	89	96.685	Chrysemys_picta_bellii
ENSPSIG00000012066	PRDM4	100	81.559	ENSCANG00000021804	PRDM4	91	81.559	Colobus_angolensis_palliatus
ENSPSIG00000012066	PRDM4	100	85.635	ENSCGRG00001015102	-	89	85.635	Cricetulus_griseus_chok1gshd
ENSPSIG00000012066	PRDM4	96	85.526	ENSCGRG00000004044	-	88	85.526	Cricetulus_griseus_crigri
ENSPSIG00000012066	PRDM4	100	85.405	ENSDNOG00000032478	PRDM4	89	85.405	Dasypus_novemcinctus
ENSPSIG00000012066	PRDM4	90	85.113	ENSDORG00000015081	-	90	84.790	Dipodomys_ordii
ENSPSIG00000012066	PRDM4	93	53.261	ENSEBUG00000003775	prdm4	86	53.261	Eptatretus_burgeri
ENSPSIG00000012066	PRDM4	100	81.749	ENSECAG00000015423	PRDM4	91	81.749	Equus_caballus
ENSPSIG00000012066	PRDM4	93	78.476	ENSEEUG00000006569	PRDM4	91	77.905	Erinaceus_europaeus
ENSPSIG00000012066	PRDM4	99	69.022	ENSELUG00000015265	prdm4	85	69.022	Esox_lucius
ENSPSIG00000012066	PRDM4	100	82.510	ENSFCAG00000022478	PRDM4	91	82.510	Felis_catus
ENSPSIG00000012066	PRDM4	100	95.028	ENSFALG00000013342	PRDM4	85	95.028	Ficedula_albicollis
ENSPSIG00000012066	PRDM4	100	93.370	ENSGALG00000012619	PRDM4	92	93.370	Gallus_gallus
ENSPSIG00000012066	PRDM4	100	98.343	ENSGAGG00000002763	PRDM4	84	98.343	Gopherus_agassizii
ENSPSIG00000012066	PRDM4	100	81.559	ENSGGOG00000001244	PRDM4	91	81.559	Gorilla_gorilla
ENSPSIG00000012066	PRDM4	100	79.227	ENSHGLG00000004590	PRDM4	90	79.227	Heterocephalus_glaber_female
ENSPSIG00000012066	PRDM4	100	79.227	ENSHGLG00100007464	PRDM4	91	79.227	Heterocephalus_glaber_male
ENSPSIG00000012066	PRDM4	92	71.264	ENSIPUG00000024162	prdm4	75	71.264	Ictalurus_punctatus
ENSPSIG00000012066	PRDM4	100	88.398	ENSSTOG00000016168	PRDM4	88	88.398	Ictidomys_tridecemlineatus
ENSPSIG00000012066	PRDM4	75	89.434	ENSJJAG00000022448	-	81	89.434	Jaculus_jaculus
ENSPSIG00000012066	PRDM4	100	77.901	ENSLACG00000007452	PRDM4	87	77.901	Latimeria_chalumnae
ENSPSIG00000012066	PRDM4	67	46.277	ENSLOCG00000017092	prdm4	89	55.844	Lepisosteus_oculatus
ENSPSIG00000012066	PRDM4	98	81.818	ENSLAFG00000001483	PRDM4	91	81.818	Loxodonta_africana
ENSPSIG00000012066	PRDM4	100	81.559	ENSMFAG00000041862	PRDM4	91	81.559	Macaca_fascicularis
ENSPSIG00000012066	PRDM4	100	81.559	ENSMMUG00000015550	PRDM4	91	81.559	Macaca_mulatta
ENSPSIG00000012066	PRDM4	100	81.369	ENSMNEG00000032319	PRDM4	91	81.369	Macaca_nemestrina
ENSPSIG00000012066	PRDM4	100	81.369	ENSMLEG00000039607	PRDM4	91	81.369	Mandrillus_leucophaeus
ENSPSIG00000012066	PRDM4	96	92.818	ENSMGAG00000012815	PRDM4	78	92.818	Meleagris_gallopavo
ENSPSIG00000012066	PRDM4	100	88.398	ENSMICG00000007807	PRDM4	88	88.398	Microcebus_murinus
ENSPSIG00000012066	PRDM4	100	79.167	ENSMOCG00000000753	Prdm4	91	78.977	Microtus_ochrogaster
ENSPSIG00000012066	PRDM4	100	80.492	ENSMUSG00000035529	Prdm4	92	79.735	Mus_musculus
ENSPSIG00000012066	PRDM4	100	79.545	MGP_PahariEiJ_G0031398	Prdm4	92	79.545	Mus_pahari
ENSPSIG00000012066	PRDM4	100	80.871	MGP_SPRETEiJ_G0016505	Prdm4	92	80.871	Mus_spretus
ENSPSIG00000012066	PRDM4	100	81.594	ENSMPUG00000012238	PRDM4	91	81.594	Mustela_putorius_furo
ENSPSIG00000012066	PRDM4	100	80.989	ENSMLUG00000000767	PRDM4	91	80.989	Myotis_lucifugus
ENSPSIG00000012066	PRDM4	100	80.492	ENSNGAG00000018627	Prdm4	92	80.492	Nannospalax_galili
ENSPSIG00000012066	PRDM4	100	81.369	ENSNLEG00000006748	PRDM4	91	81.369	Nomascus_leucogenys
ENSPSIG00000012066	PRDM4	94	90.055	ENSMEUG00000004495	PRDM4	76	90.055	Notamacropus_eugenii
ENSPSIG00000012066	PRDM4	86	88.988	ENSOPRG00000010192	PRDM4	80	88.988	Ochotona_princeps
ENSPSIG00000012066	PRDM4	100	78.261	ENSODEG00000014750	PRDM4	91	78.261	Octodon_degus
ENSPSIG00000012066	PRDM4	100	92.265	ENSOANG00000005526	PRDM4	81	92.265	Ornithorhynchus_anatinus
ENSPSIG00000012066	PRDM4	93	81.840	ENSOCUG00000012859	PRDM4	87	79.710	Oryctolagus_cuniculus
ENSPSIG00000012066	PRDM4	100	81.179	ENSOGAG00000011945	PRDM4	91	80.418	Otolemur_garnettii
ENSPSIG00000012066	PRDM4	100	82.319	ENSOARG00000017955	PRDM4	91	82.319	Ovis_aries
ENSPSIG00000012066	PRDM4	100	81.439	ENSPPAG00000038438	PRDM4	91	81.439	Pan_paniscus
ENSPSIG00000012066	PRDM4	100	82.510	ENSPPRG00000004144	PRDM4	91	82.510	Panthera_pardus
ENSPSIG00000012066	PRDM4	100	82.510	ENSPTIG00000005847	PRDM4	91	82.510	Panthera_tigris_altaica
ENSPSIG00000012066	PRDM4	100	81.559	ENSPTRG00000005400	PRDM4	91	81.559	Pan_troglodytes
ENSPSIG00000012066	PRDM4	100	81.559	ENSPANG00000022084	PRDM4	91	81.559	Papio_anubis
ENSPSIG00000012066	PRDM4	99	69.780	ENSPKIG00000000875	prdm4	81	69.780	Paramormyrops_kingsleyae
ENSPSIG00000012066	PRDM4	100	80.492	ENSPEMG00000014598	Prdm4	92	80.492	Peromyscus_maniculatus_bairdii
ENSPSIG00000012066	PRDM4	100	86.188	ENSPCIG00000009471	PRDM4	88	86.188	Phascolarctos_cinereus
ENSPSIG00000012066	PRDM4	100	81.749	ENSPPYG00000004913	PRDM4	91	81.749	Pongo_abelii
ENSPSIG00000012066	PRDM4	88	90.909	ENSPCAG00000009987	PRDM4	71	90.909	Procavia_capensis
ENSPSIG00000012066	PRDM4	100	80.882	ENSPCOG00000021060	PRDM4	91	80.882	Propithecus_coquereli
ENSPSIG00000012066	PRDM4	100	81.262	ENSPVAG00000001596	PRDM4	91	80.193	Pteropus_vampyrus
ENSPSIG00000012066	PRDM4	100	79.017	ENSRNOG00000004962	Prdm4	92	78.450	Rattus_norvegicus
ENSPSIG00000012066	PRDM4	100	81.559	ENSRBIG00000035488	PRDM4	91	81.559	Rhinopithecus_bieti
ENSPSIG00000012066	PRDM4	100	81.559	ENSRROG00000012779	PRDM4	91	81.559	Rhinopithecus_roxellana
ENSPSIG00000012066	PRDM4	100	87.500	ENSSBOG00000000403	PRDM4	91	81.439	Saimiri_boliviensis_boliviensis
ENSPSIG00000012066	PRDM4	99	70.652	ENSSFOG00015023358	prdm4	86	70.652	Scleropages_formosus
ENSPSIG00000012066	PRDM4	100	82.129	ENSSSCG00000000160	PRDM4	91	82.129	Sus_scrofa
ENSPSIG00000012066	PRDM4	100	94.475	ENSTGUG00000010962	-	84	94.475	Taeniopygia_guttata
ENSPSIG00000012066	PRDM4	67	71.801	ENSTBEG00000001732	PRDM4	74	71.801	Tupaia_belangeri
ENSPSIG00000012066	PRDM4	100	80.989	ENSTTRG00000011056	PRDM4	91	80.989	Tursiops_truncatus
ENSPSIG00000012066	PRDM4	100	82.700	ENSUAMG00000022796	PRDM4	91	82.700	Ursus_americanus
ENSPSIG00000012066	PRDM4	100	82.700	ENSUMAG00000017231	PRDM4	91	82.700	Ursus_maritimus
ENSPSIG00000012066	PRDM4	100	82.890	ENSVPAG00000002215	PRDM4	91	82.890	Vicugna_pacos
ENSPSIG00000012066	PRDM4	100	81.939	ENSVVUG00000023397	PRDM4	91	81.939	Vulpes_vulpes