EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000012201 (Gene tree)
Gene ID: 102461489
Gene Symbol: SMG7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 49403 bases
Position: chrJH209729.1:228200-277602
Accession: 102461489
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000013773	EST1	PF10374.9	5.2e-26	1	1
ENSPSIP00000013779	EST1	PF10374.9	5.7e-26	1	1
ENSPSIP00000013773	EST1_DNA_bind	PF10373.9	3.5e-55	1	1
ENSPSIP00000013779	EST1_DNA_bind	PF10373.9	3.7e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000013844	SMG7-202	3417	XM_006126916	ENSPSIP00000013779	1138 (aa)	-	K7G0G9
ENSPSIT00000013838	SMG7-201	7574	XM_006126917	ENSPSIP00000013773	1111 (aa)	XP_014430912	K7G0G3

Gene Model

Click here to download ENSPSIG00000012201's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012201's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012201	SMG7	99	91.557	ENSG00000116698	SMG7	100	91.667	Homo_sapiens
ENSPSIG00000012201	SMG7	86	73.966	ENSAPOG00000009611	smg7	94	73.966	Acanthochromis_polyacanthus
ENSPSIG00000012201	SMG7	100	88.750	ENSAMEG00000002357	SMG7	98	89.375	Ailuropoda_melanoleuca
ENSPSIG00000012201	SMG7	98	64.381	ENSACIG00000015152	smg7	100	64.732	Amphilophus_citrinellus
ENSPSIG00000012201	SMG7	100	65.946	ENSAOCG00000013538	smg7	99	65.868	Amphiprion_ocellaris
ENSPSIG00000012201	SMG7	100	65.946	ENSAPEG00000007851	smg7	99	65.868	Amphiprion_percula
ENSPSIG00000012201	SMG7	100	65.352	ENSATEG00000006931	smg7	99	65.702	Anabas_testudineus
ENSPSIG00000012201	SMG7	100	92.260	ENSAPLG00000015811	SMG7	98	92.260	Anas_platyrhynchos
ENSPSIG00000012201	SMG7	99	86.778	ENSACAG00000014989	SMG7	99	86.360	Anolis_carolinensis
ENSPSIG00000012201	SMG7	100	90.536	ENSANAG00000028114	SMG7	98	90.804	Aotus_nancymaae
ENSPSIG00000012201	SMG7	100	64.777	ENSACLG00000022079	smg7	99	65.769	Astatotilapia_calliptera
ENSPSIG00000012201	SMG7	100	68.398	ENSAMXG00000020809	smg7	99	67.731	Astyanax_mexicanus
ENSPSIG00000012201	SMG7	99	90.237	ENSBTAG00000008003	SMG7	97	90.501	Bos_taurus
ENSPSIG00000012201	SMG7	99	91.733	ENSCJAG00000005135	SMG7	97	91.821	Callithrix_jacchus
ENSPSIG00000012201	SMG7	99	90.765	ENSCAFG00000013276	SMG7	97	90.941	Canis_familiaris
ENSPSIG00000012201	SMG7	99	90.765	ENSCAFG00020015475	SMG7	97	90.941	Canis_lupus_dingo
ENSPSIG00000012201	SMG7	99	90.556	ENSCHIG00000018192	SMG7	99	90.733	Capra_hircus
ENSPSIG00000012201	SMG7	99	91.117	ENSTSYG00000002667	SMG7	97	91.205	Carlito_syrichta
ENSPSIG00000012201	SMG7	99	90.501	ENSCPOG00000008906	SMG7	99	89.613	Cavia_porcellus
ENSPSIG00000012201	SMG7	100	90.804	ENSCCAG00000028596	SMG7	98	91.071	Cebus_capucinus
ENSPSIG00000012201	SMG7	99	91.733	ENSCATG00000011063	SMG7	97	91.996	Cercocebus_atys
ENSPSIG00000012201	SMG7	99	91.086	ENSCLAG00000010751	SMG7	99	91.174	Chinchilla_lanigera
ENSPSIG00000012201	SMG7	99	91.557	ENSCSAG00000012654	SMG7	97	91.821	Chlorocebus_sabaeus
ENSPSIG00000012201	SMG7	92	83.397	ENSCHOG00000010522	SMG7	93	84.160	Choloepus_hoffmanni
ENSPSIG00000012201	SMG7	100	96.702	ENSCPBG00000015724	SMG7	98	96.702	Chrysemys_picta_bellii
ENSPSIG00000012201	SMG7	100	90.446	ENSCANG00000015680	SMG7	98	90.714	Colobus_angolensis_palliatus
ENSPSIG00000012201	SMG7	99	90.909	ENSCGRG00001013705	Smg7	99	91.174	Cricetulus_griseus_chok1gshd
ENSPSIG00000012201	SMG7	99	90.765	ENSCGRG00000018401	Smg7	99	91.029	Cricetulus_griseus_crigri
ENSPSIG00000012201	SMG7	100	65.199	ENSCVAG00000011842	smg7	100	70.000	Cyprinodon_variegatus
ENSPSIG00000012201	SMG7	100	67.424	ENSDARG00000060767	smg7	99	67.306	Danio_rerio
ENSPSIG00000012201	SMG7	99	90.556	ENSDORG00000007331	Smg7	99	90.821	Dipodomys_ordii
ENSPSIG00000012201	SMG7	96	90.693	ENSETEG00000002654	SMG7	99	90.785	Echinops_telfairi
ENSPSIG00000012201	SMG7	99	91.615	ENSEASG00005006524	SMG7	99	92.145	Equus_asinus_asinus
ENSPSIG00000012201	SMG7	96	97.806	ENSECAG00000004313	SMG7	97	96.707	Equus_caballus
ENSPSIG00000012201	SMG7	95	90.599	ENSEEUG00000002024	SMG7	92	91.336	Erinaceus_europaeus
ENSPSIG00000012201	SMG7	99	66.003	ENSELUG00000010293	smg7	99	66.198	Esox_lucius
ENSPSIG00000012201	SMG7	99	90.468	ENSFCAG00000010900	SMG7	99	90.909	Felis_catus
ENSPSIG00000012201	SMG7	99	85.690	ENSFALG00000003047	SMG7	100	85.580	Ficedula_albicollis
ENSPSIG00000012201	SMG7	99	90.724	ENSFDAG00000012121	SMG7	99	90.917	Fukomys_damarensis
ENSPSIG00000012201	SMG7	100	64.957	ENSFHEG00000011073	smg7	99	65.217	Fundulus_heteroclitus
ENSPSIG00000012201	SMG7	96	57.194	ENSGMOG00000004916	smg7	92	67.695	Gadus_morhua
ENSPSIG00000012201	SMG7	100	91.370	ENSGALG00000004667	SMG7	98	91.548	Gallus_gallus
ENSPSIG00000012201	SMG7	100	64.466	ENSGAFG00000019000	smg7	99	64.553	Gambusia_affinis
ENSPSIG00000012201	SMG7	97	64.541	ENSGACG00000001634	smg7	99	64.900	Gasterosteus_aculeatus
ENSPSIG00000012201	SMG7	99	91.469	ENSGGOG00000002342	SMG7	97	91.733	Gorilla_gorilla
ENSPSIG00000012201	SMG7	100	63.772	ENSHBUG00000003726	smg7	96	72.589	Haplochromis_burtoni
ENSPSIG00000012201	SMG7	100	89.554	ENSHGLG00000009353	SMG7	100	91.006	Heterocephalus_glaber_female
ENSPSIG00000012201	SMG7	99	83.672	ENSHGLG00100004878	-	99	83.848	Heterocephalus_glaber_male
ENSPSIG00000012201	SMG7	100	89.643	ENSHGLG00100009637	-	100	89.403	Heterocephalus_glaber_male
ENSPSIG00000012201	SMG7	100	68.226	ENSIPUG00000016997	smg7	99	67.369	Ictalurus_punctatus
ENSPSIG00000012201	SMG7	99	92.056	ENSSTOG00000000401	SMG7	99	92.145	Ictidomys_tridecemlineatus
ENSPSIG00000012201	SMG7	99	90.026	ENSJJAG00000012351	Smg7	99	90.115	Jaculus_jaculus
ENSPSIG00000012201	SMG7	99	61.276	ENSKMAG00000004900	smg7	96	70.000	Kryptolebias_marmoratus
ENSPSIG00000012201	SMG7	100	65.824	ENSLBEG00000002983	smg7	98	66.085	Labrus_bergylta
ENSPSIG00000012201	SMG7	53	63.300	ENSLBEG00000005220	-	75	63.972	Labrus_bergylta
ENSPSIG00000012201	SMG7	100	75.088	ENSLACG00000000972	SMG7	99	75.913	Latimeria_chalumnae
ENSPSIG00000012201	SMG7	99	69.205	ENSLOCG00000002010	smg7	99	69.289	Lepisosteus_oculatus
ENSPSIG00000012201	SMG7	99	91.703	ENSLAFG00000008186	SMG7	99	91.887	Loxodonta_africana
ENSPSIG00000012201	SMG7	99	91.880	ENSMFAG00000031653	SMG7	99	92.145	Macaca_fascicularis
ENSPSIG00000012201	SMG7	99	91.733	ENSMMUG00000018458	SMG7	97	91.996	Macaca_mulatta
ENSPSIG00000012201	SMG7	100	90.536	ENSMNEG00000034798	SMG7	98	90.804	Macaca_nemestrina
ENSPSIG00000012201	SMG7	99	91.733	ENSMLEG00000037170	SMG7	97	91.996	Mandrillus_leucophaeus
ENSPSIG00000012201	SMG7	88	64.643	ENSMAMG00000018733	smg7	86	62.960	Mastacembelus_armatus
ENSPSIG00000012201	SMG7	100	65.538	ENSMZEG00005015247	smg7	99	65.799	Maylandia_zebra
ENSPSIG00000012201	SMG7	98	91.289	ENSMGAG00000001561	SMG7	97	91.561	Meleagris_gallopavo
ENSPSIG00000012201	SMG7	99	90.997	ENSMAUG00000019484	Smg7	99	91.533	Mesocricetus_auratus
ENSPSIG00000012201	SMG7	99	91.645	ENSMICG00000007145	SMG7	99	91.293	Microcebus_murinus
ENSPSIG00000012201	SMG7	99	90.733	ENSMOCG00000020748	Smg7	99	90.909	Microtus_ochrogaster
ENSPSIG00000012201	SMG7	100	64.049	ENSMMOG00000001524	smg7	98	64.014	Mola_mola
ENSPSIG00000012201	SMG7	92	90.619	ENSMODG00000007139	SMG7	98	90.716	Monodelphis_domestica
ENSPSIG00000012201	SMG7	96	69.652	ENSMALG00000000061	smg7	92	69.652	Monopterus_albus
ENSPSIG00000012201	SMG7	99	90.813	MGP_CAROLIEiJ_G0014704	Smg7	99	91.078	Mus_caroli
ENSPSIG00000012201	SMG7	99	90.203	ENSMUSG00000042772	Smg7	99	90.733	Mus_musculus
ENSPSIG00000012201	SMG7	99	90.203	MGP_PahariEiJ_G0027940	Smg7	99	90.733	Mus_pahari
ENSPSIG00000012201	SMG7	99	90.291	MGP_SPRETEiJ_G0015511	Smg7	99	90.821	Mus_spretus
ENSPSIG00000012201	SMG7	98	90.205	ENSMPUG00000011732	SMG7	97	90.917	Mustela_putorius_furo
ENSPSIG00000012201	SMG7	99	90.733	ENSMLUG00000015417	SMG7	99	91.439	Myotis_lucifugus
ENSPSIG00000012201	SMG7	99	90.237	ENSNGAG00000009836	Smg7	99	90.009	Nannospalax_galili
ENSPSIG00000012201	SMG7	99	61.077	ENSNBRG00000024343	smg7	98	70.142	Neolamprologus_brichardi
ENSPSIG00000012201	SMG7	99	91.821	ENSNLEG00000018018	SMG7	97	92.084	Nomascus_leucogenys
ENSPSIG00000012201	SMG7	70	91.057	ENSMEUG00000004681	SMG7	72	91.057	Notamacropus_eugenii
ENSPSIG00000012201	SMG7	96	80.365	ENSOPRG00000013942	SMG7	96	80.274	Ochotona_princeps
ENSPSIG00000012201	SMG7	99	90.909	ENSODEG00000010390	SMG7	99	90.997	Octodon_degus
ENSPSIG00000012201	SMG7	100	64.555	ENSONIG00000000277	smg7	99	65.628	Oreochromis_niloticus
ENSPSIG00000012201	SMG7	99	89.973	ENSOANG00000000994	SMG7	100	90.506	Ornithorhynchus_anatinus
ENSPSIG00000012201	SMG7	99	84.683	ENSOCUG00000005887	SMG7	93	85.211	Oryctolagus_cuniculus
ENSPSIG00000012201	SMG7	100	62.120	ENSORLG00000007314	smg7	74	88.750	Oryzias_latipes
ENSPSIG00000012201	SMG7	100	62.294	ENSORLG00020015779	smg7	99	63.659	Oryzias_latipes_hni
ENSPSIG00000012201	SMG7	99	64.021	ENSORLG00015012289	smg7	99	63.409	Oryzias_latipes_hsok
ENSPSIG00000012201	SMG7	99	63.034	ENSOMEG00000002328	smg7	99	64.040	Oryzias_melastigma
ENSPSIG00000012201	SMG7	96	90.776	ENSOGAG00000003107	SMG7	93	90.685	Otolemur_garnettii
ENSPSIG00000012201	SMG7	99	90.325	ENSOARG00000001352	SMG7	97	90.501	Ovis_aries
ENSPSIG00000012201	SMG7	100	90.536	ENSPPAG00000031619	SMG7	98	90.804	Pan_paniscus
ENSPSIG00000012201	SMG7	99	90.501	ENSPPRG00000011222	SMG7	97	90.941	Panthera_pardus
ENSPSIG00000012201	SMG7	97	89.937	ENSPTIG00000007242	SMG7	100	87.260	Panthera_tigris_altaica
ENSPSIG00000012201	SMG7	100	90.536	ENSPTRG00000001764	SMG7	98	90.804	Pan_troglodytes
ENSPSIG00000012201	SMG7	99	91.733	ENSPANG00000004520	SMG7	97	91.996	Papio_anubis
ENSPSIG00000012201	SMG7	100	65.044	ENSPKIG00000007242	smg7	99	69.307	Paramormyrops_kingsleyae
ENSPSIG00000012201	SMG7	72	43.149	ENSPMGG00000021833	smg7	89	57.513	Periophthalmus_magnuspinnatus
ENSPSIG00000012201	SMG7	99	90.203	ENSPEMG00000011315	Smg7	99	90.468	Peromyscus_maniculatus_bairdii
ENSPSIG00000012201	SMG7	100	90.804	ENSPCIG00000003786	SMG7	98	90.893	Phascolarctos_cinereus
ENSPSIG00000012201	SMG7	99	63.870	ENSPFOG00000019219	smg7	99	64.262	Poecilia_formosa
ENSPSIG00000012201	SMG7	100	64.870	ENSPLAG00000001446	smg7	99	65.191	Poecilia_latipinna
ENSPSIG00000012201	SMG7	97	64.151	ENSPMEG00000005218	smg7	98	64.484	Poecilia_mexicana
ENSPSIG00000012201	SMG7	87	61.862	ENSPREG00000019039	smg7	90	62.763	Poecilia_reticulata
ENSPSIG00000012201	SMG7	100	90.625	ENSPPYG00000000427	SMG7	98	90.893	Pongo_abelii
ENSPSIG00000012201	SMG7	91	85.129	ENSPCAG00000008360	SMG7	88	87.433	Procavia_capensis
ENSPSIG00000012201	SMG7	99	91.645	ENSPCOG00000011996	SMG7	97	91.293	Propithecus_coquereli
ENSPSIG00000012201	SMG7	91	86.250	ENSPVAG00000000851	SMG7	89	86.827	Pteropus_vampyrus
ENSPSIG00000012201	SMG7	100	65.195	ENSPNYG00000007643	smg7	99	66.290	Pundamilia_nyererei
ENSPSIG00000012201	SMG7	100	68.421	ENSPNAG00000011374	smg7	97	72.727	Pygocentrus_nattereri
ENSPSIG00000012201	SMG7	99	90.300	ENSRNOG00000027962	Smg7	100	90.476	Rattus_norvegicus
ENSPSIG00000012201	SMG7	99	91.645	ENSRBIG00000036316	SMG7	97	91.909	Rhinopithecus_bieti
ENSPSIG00000012201	SMG7	99	91.792	ENSRROG00000035719	SMG7	99	92.056	Rhinopithecus_roxellana
ENSPSIG00000012201	SMG7	99	91.880	ENSSBOG00000023454	SMG7	99	92.145	Saimiri_boliviensis_boliviensis
ENSPSIG00000012201	SMG7	100	90.536	ENSSHAG00000013147	SMG7	98	90.544	Sarcophilus_harrisii
ENSPSIG00000012201	SMG7	93	75.622	ENSSFOG00015017252	smg7	99	77.487	Scleropages_formosus
ENSPSIG00000012201	SMG7	100	65.153	ENSSMAG00000006067	smg7	100	64.450	Scophthalmus_maximus
ENSPSIG00000012201	SMG7	100	65.161	ENSSDUG00000017543	smg7	99	65.195	Seriola_dumerili
ENSPSIG00000012201	SMG7	100	92.602	ENSSPUG00000002064	SMG7	98	92.602	Sphenodon_punctatus
ENSPSIG00000012201	SMG7	99	66.872	ENSSPAG00000008733	smg7	98	66.958	Stegastes_partitus
ENSPSIG00000012201	SMG7	99	90.909	ENSSSCG00000015558	SMG7	99	91.615	Sus_scrofa
ENSPSIG00000012201	SMG7	100	91.022	ENSTGUG00000003928	SMG7	99	91.289	Taeniopygia_guttata
ENSPSIG00000012201	SMG7	99	64.776	ENSTNIG00000002802	smg7	99	64.860	Tetraodon_nigroviridis
ENSPSIG00000012201	SMG7	77	91.983	ENSTBEG00000003220	SMG7	75	91.983	Tupaia_belangeri
ENSPSIG00000012201	SMG7	96	90.602	ENSTTRG00000014778	SMG7	94	91.332	Tursiops_truncatus
ENSPSIG00000012201	SMG7	98	86.514	ENSUAMG00000017473	SMG7	100	87.156	Ursus_americanus
ENSPSIG00000012201	SMG7	96	90.091	ENSUMAG00000016389	SMG7	100	90.727	Ursus_maritimus
ENSPSIG00000012201	SMG7	99	90.556	ENSVVUG00000008976	SMG7	99	91.174	Vulpes_vulpes
ENSPSIG00000012201	SMG7	100	69.729	ENSXETG00000012528	smg7	99	69.774	Xenopus_tropicalis
ENSPSIG00000012201	SMG7	100	64.286	ENSXMAG00000007123	smg7	99	64.696	Xiphophorus_maculatus