EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000012257 (Gene tree)
Gene ID: 102444099
Gene Symbol: SMNDC1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 15633 bases
Position: chrJH212492.1:5297985-5313617
Accession: 102444099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000013643	SMN	PF06003.12	2.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000013707	SMNDC1-201	3682	XM_006135005	ENSPSIP00000013643	238 (aa)	XP_006135067	K7G033

Gene Model

Click here to download ENSPSIG00000012257's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012257's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012257	SMNDC1	100	97.899	ENSG00000119953	SMNDC1	100	97.899	Homo_sapiens
ENSPSIG00000012257	SMNDC1	100	75.630	ENSAPOG00000021772	smndc1	100	75.630	Acanthochromis_polyacanthus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSAMEG00000005251	SMNDC1	100	97.479	Ailuropoda_melanoleuca
ENSPSIG00000012257	SMNDC1	100	76.471	ENSACIG00000004819	smndc1	100	76.471	Amphilophus_citrinellus
ENSPSIG00000012257	SMNDC1	100	75.630	ENSAOCG00000017869	smndc1	100	75.630	Amphiprion_ocellaris
ENSPSIG00000012257	SMNDC1	100	75.630	ENSAPEG00000007752	smndc1	100	75.630	Amphiprion_percula
ENSPSIG00000012257	SMNDC1	100	76.891	ENSATEG00000006830	smndc1	100	76.891	Anabas_testudineus
ENSPSIG00000012257	SMNDC1	83	97.475	ENSAPLG00000004322	SMNDC1	100	97.475	Anas_platyrhynchos
ENSPSIG00000012257	SMNDC1	100	95.798	ENSACAG00000005983	SMNDC1	100	95.798	Anolis_carolinensis
ENSPSIG00000012257	SMNDC1	100	97.479	ENSANAG00000032875	SMNDC1	100	97.479	Aotus_nancymaae
ENSPSIG00000012257	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSPSIG00000012257	SMNDC1	100	76.891	ENSAMXG00000020310	smndc1	100	76.891	Astyanax_mexicanus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSBTAG00000000551	SMNDC1	100	97.059	Bos_taurus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCJAG00000018624	SMNDC1	100	97.479	Callithrix_jacchus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCAFG00000010720	SMNDC1	100	97.479	Canis_familiaris
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCAFG00020011913	SMNDC1	100	97.479	Canis_lupus_dingo
ENSPSIG00000012257	SMNDC1	100	97.059	ENSCHIG00000010604	SMNDC1	100	97.059	Capra_hircus
ENSPSIG00000012257	SMNDC1	100	97.899	ENSTSYG00000026454	SMNDC1	100	97.899	Carlito_syrichta
ENSPSIG00000012257	SMNDC1	84	96.020	ENSCAPG00000009132	SMNDC1	100	96.020	Cavia_aperea
ENSPSIG00000012257	SMNDC1	100	96.639	ENSCPOG00000031666	SMNDC1	100	96.639	Cavia_porcellus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCCAG00000021793	SMNDC1	100	97.479	Cebus_capucinus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSCATG00000035910	SMNDC1	100	97.059	Cercocebus_atys
ENSPSIG00000012257	SMNDC1	100	96.639	ENSCLAG00000002838	SMNDC1	100	96.639	Chinchilla_lanigera
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCSAG00000005169	SMNDC1	100	97.479	Chlorocebus_sabaeus
ENSPSIG00000012257	SMNDC1	81	96.373	ENSCHOG00000002936	SMNDC1	100	96.373	Choloepus_hoffmanni
ENSPSIG00000012257	SMNDC1	100	99.580	ENSCPBG00000012837	SMNDC1	100	99.580	Chrysemys_picta_bellii
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCANG00000031720	-	100	97.479	Colobus_angolensis_palliatus
ENSPSIG00000012257	SMNDC1	100	76.471	ENSCANG00000036994	-	100	76.471	Colobus_angolensis_palliatus
ENSPSIG00000012257	SMNDC1	100	90.336	ENSCANG00000034620	-	100	90.336	Colobus_angolensis_palliatus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCGRG00001012973	Smndc1	100	97.479	Cricetulus_griseus_chok1gshd
ENSPSIG00000012257	SMNDC1	100	97.479	ENSCGRG00000012396	Smndc1	100	97.479	Cricetulus_griseus_crigri
ENSPSIG00000012257	SMNDC1	100	76.050	ENSCSEG00000015621	smndc1	100	76.050	Cynoglossus_semilaevis
ENSPSIG00000012257	SMNDC1	100	77.311	ENSCVAG00000020432	smndc1	100	77.311	Cyprinodon_variegatus
ENSPSIG00000012257	SMNDC1	100	79.832	ENSDARG00000056235	smndc1	100	79.832	Danio_rerio
ENSPSIG00000012257	SMNDC1	100	97.479	ENSDNOG00000016387	SMNDC1	83	97.479	Dasypus_novemcinctus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSDORG00000023715	Smndc1	100	97.479	Dipodomys_ordii
ENSPSIG00000012257	SMNDC1	95	43.775	FBgn0039977	CG17454	98	43.373	Drosophila_melanogaster
ENSPSIG00000012257	SMNDC1	100	71.369	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSPSIG00000012257	SMNDC1	100	97.479	ENSEASG00005014930	SMNDC1	100	97.479	Equus_asinus_asinus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSECAG00000029973	SMNDC1	100	97.479	Equus_caballus
ENSPSIG00000012257	SMNDC1	83	67.677	ENSEEUG00000013407	-	100	67.677	Erinaceus_europaeus
ENSPSIG00000012257	SMNDC1	100	78.992	ENSELUG00000000227	smndc1	100	78.992	Esox_lucius
ENSPSIG00000012257	SMNDC1	100	97.479	ENSFCAG00000027353	SMNDC1	100	97.479	Felis_catus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSFALG00000002306	SMNDC1	100	97.059	Ficedula_albicollis
ENSPSIG00000012257	SMNDC1	100	97.059	ENSFDAG00000006468	SMNDC1	100	97.059	Fukomys_damarensis
ENSPSIG00000012257	SMNDC1	100	76.891	ENSFHEG00000020150	smndc1	100	76.891	Fundulus_heteroclitus
ENSPSIG00000012257	SMNDC1	100	77.731	ENSGMOG00000016585	smndc1	100	77.731	Gadus_morhua
ENSPSIG00000012257	SMNDC1	100	97.059	ENSGALG00000008561	SMNDC1	100	97.059	Gallus_gallus
ENSPSIG00000012257	SMNDC1	100	75.630	ENSGAFG00000011582	smndc1	100	75.630	Gambusia_affinis
ENSPSIG00000012257	SMNDC1	100	76.471	ENSGACG00000009468	smndc1	100	76.471	Gasterosteus_aculeatus
ENSPSIG00000012257	SMNDC1	100	99.580	ENSGAGG00000024547	SMNDC1	100	99.580	Gopherus_agassizii
ENSPSIG00000012257	SMNDC1	100	97.479	ENSGGOG00000010071	SMNDC1	100	97.479	Gorilla_gorilla
ENSPSIG00000012257	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSPSIG00000012257	SMNDC1	100	97.059	ENSHGLG00000013390	-	100	97.059	Heterocephalus_glaber_female
ENSPSIG00000012257	SMNDC1	100	66.803	ENSHGLG00000001157	-	100	61.633	Heterocephalus_glaber_female
ENSPSIG00000012257	SMNDC1	100	97.059	ENSHGLG00100004814	-	100	97.059	Heterocephalus_glaber_male
ENSPSIG00000012257	SMNDC1	100	75.000	ENSHGLG00100004278	-	100	72.541	Heterocephalus_glaber_male
ENSPSIG00000012257	SMNDC1	100	75.314	ENSHCOG00000000783	smndc1	100	75.314	Hippocampus_comes
ENSPSIG00000012257	SMNDC1	100	78.571	ENSIPUG00000004217	smndc1	100	78.571	Ictalurus_punctatus
ENSPSIG00000012257	SMNDC1	100	97.899	ENSSTOG00000006088	SMNDC1	100	97.899	Ictidomys_tridecemlineatus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSJJAG00000019974	Smndc1	100	97.059	Jaculus_jaculus
ENSPSIG00000012257	SMNDC1	100	75.630	ENSKMAG00000020134	smndc1	100	75.630	Kryptolebias_marmoratus
ENSPSIG00000012257	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSPSIG00000012257	SMNDC1	100	85.294	ENSLACG00000007784	SMNDC1	100	85.294	Latimeria_chalumnae
ENSPSIG00000012257	SMNDC1	100	85.714	ENSLOCG00000012355	smndc1	100	85.714	Lepisosteus_oculatus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSLAFG00000014353	SMNDC1	100	97.059	Loxodonta_africana
ENSPSIG00000012257	SMNDC1	100	97.479	ENSMFAG00000002433	-	100	97.479	Macaca_fascicularis
ENSPSIG00000012257	SMNDC1	100	79.832	ENSMFAG00000038381	-	100	78.992	Macaca_fascicularis
ENSPSIG00000012257	SMNDC1	100	97.479	ENSMMUG00000007775	SMNDC1	100	97.479	Macaca_mulatta
ENSPSIG00000012257	SMNDC1	100	79.832	ENSMMUG00000045875	-	100	78.992	Macaca_mulatta
ENSPSIG00000012257	SMNDC1	100	97.479	ENSMNEG00000042963	-	100	97.479	Macaca_nemestrina
ENSPSIG00000012257	SMNDC1	100	86.555	ENSMNEG00000033853	-	100	86.555	Macaca_nemestrina
ENSPSIG00000012257	SMNDC1	100	91.213	ENSMLEG00000040236	SMNDC1	100	90.795	Mandrillus_leucophaeus
ENSPSIG00000012257	SMNDC1	89	74.178	ENSMAMG00000018233	smndc1	87	74.178	Mastacembelus_armatus
ENSPSIG00000012257	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSPSIG00000012257	SMNDC1	84	98.000	ENSMGAG00000010777	SMNDC1	84	98.000	Meleagris_gallopavo
ENSPSIG00000012257	SMNDC1	99	78.481	ENSMAUG00000005459	-	93	78.481	Mesocricetus_auratus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSMAUG00000012243	-	100	97.479	Mesocricetus_auratus
ENSPSIG00000012257	SMNDC1	100	84.454	ENSMICG00000031640	-	100	84.454	Microcebus_murinus
ENSPSIG00000012257	SMNDC1	100	96.639	ENSMICG00000027336	-	100	96.639	Microcebus_murinus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSMOCG00000002458	Smndc1	100	97.059	Microtus_ochrogaster
ENSPSIG00000012257	SMNDC1	100	76.891	ENSMMOG00000008856	smndc1	100	76.891	Mola_mola
ENSPSIG00000012257	SMNDC1	100	98.319	ENSMODG00000010542	SMNDC1	100	98.319	Monodelphis_domestica
ENSPSIG00000012257	SMNDC1	100	76.891	ENSMALG00000017598	smndc1	100	76.891	Monopterus_albus
ENSPSIG00000012257	SMNDC1	100	97.059	MGP_CAROLIEiJ_G0023072	Smndc1	100	97.059	Mus_caroli
ENSPSIG00000012257	SMNDC1	100	97.479	ENSMUSG00000025024	Smndc1	100	97.479	Mus_musculus
ENSPSIG00000012257	SMNDC1	100	97.899	MGP_PahariEiJ_G0014560	Smndc1	100	97.899	Mus_pahari
ENSPSIG00000012257	SMNDC1	100	97.479	MGP_SPRETEiJ_G0023993	Smndc1	100	97.479	Mus_spretus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSMPUG00000002089	SMNDC1	100	97.479	Mustela_putorius_furo
ENSPSIG00000012257	SMNDC1	100	97.059	ENSMLUG00000016007	SMNDC1	100	97.059	Myotis_lucifugus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSNGAG00000006833	Smndc1	100	97.059	Nannospalax_galili
ENSPSIG00000012257	SMNDC1	100	76.050	ENSNBRG00000017089	smndc1	100	76.050	Neolamprologus_brichardi
ENSPSIG00000012257	SMNDC1	100	97.479	ENSNLEG00000015471	SMNDC1	100	97.479	Nomascus_leucogenys
ENSPSIG00000012257	SMNDC1	82	58.000	ENSMEUG00000010120	-	82	64.072	Notamacropus_eugenii
ENSPSIG00000012257	SMNDC1	100	96.639	ENSOPRG00000015348	SMNDC1	100	96.639	Ochotona_princeps
ENSPSIG00000012257	SMNDC1	100	68.067	ENSODEG00000007594	-	100	65.126	Octodon_degus
ENSPSIG00000012257	SMNDC1	100	76.050	ENSONIG00000000434	smndc1	100	76.050	Oreochromis_niloticus
ENSPSIG00000012257	SMNDC1	100	98.739	ENSOANG00000001598	SMNDC1	100	98.739	Ornithorhynchus_anatinus
ENSPSIG00000012257	SMNDC1	100	73.529	ENSOCUG00000012274	-	100	74.370	Oryctolagus_cuniculus
ENSPSIG00000012257	SMNDC1	100	96.639	ENSOCUG00000008145	-	100	96.639	Oryctolagus_cuniculus
ENSPSIG00000012257	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSPSIG00000012257	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSPSIG00000012257	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSPSIG00000012257	SMNDC1	100	78.151	ENSOMEG00000007590	smndc1	100	78.151	Oryzias_melastigma
ENSPSIG00000012257	SMNDC1	100	97.059	ENSOGAG00000000571	SMNDC1	100	97.059	Otolemur_garnettii
ENSPSIG00000012257	SMNDC1	100	97.059	ENSOARG00000009500	SMNDC1	100	97.059	Ovis_aries
ENSPSIG00000012257	SMNDC1	100	97.479	ENSPPAG00000027815	SMNDC1	100	97.479	Pan_paniscus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSPPRG00000013749	SMNDC1	100	97.479	Panthera_pardus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSPTIG00000011451	SMNDC1	100	97.479	Panthera_tigris_altaica
ENSPSIG00000012257	SMNDC1	100	97.479	ENSPTRG00000002937	SMNDC1	100	97.479	Pan_troglodytes
ENSPSIG00000012257	SMNDC1	100	91.597	ENSPANG00000031346	-	100	91.597	Papio_anubis
ENSPSIG00000012257	SMNDC1	100	97.479	ENSPANG00000020805	-	100	97.479	Papio_anubis
ENSPSIG00000012257	SMNDC1	100	81.513	ENSPKIG00000017164	smndc1	100	81.513	Paramormyrops_kingsleyae
ENSPSIG00000012257	SMNDC1	100	73.950	ENSPMGG00000015651	smndc1	100	74.370	Periophthalmus_magnuspinnatus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSPEMG00000022058	Smndc1	100	97.479	Peromyscus_maniculatus_bairdii
ENSPSIG00000012257	SMNDC1	100	68.033	ENSPMAG00000007705	smndc1	100	67.220	Petromyzon_marinus
ENSPSIG00000012257	SMNDC1	100	98.319	ENSPCIG00000018419	SMNDC1	100	98.319	Phascolarctos_cinereus
ENSPSIG00000012257	SMNDC1	97	62.609	ENSPCIG00000009693	-	100	62.609	Phascolarctos_cinereus
ENSPSIG00000012257	SMNDC1	100	76.050	ENSPFOG00000017113	smndc1	100	76.050	Poecilia_formosa
ENSPSIG00000012257	SMNDC1	100	76.471	ENSPLAG00000010372	smndc1	100	76.471	Poecilia_latipinna
ENSPSIG00000012257	SMNDC1	100	76.471	ENSPMEG00000012288	smndc1	100	76.471	Poecilia_mexicana
ENSPSIG00000012257	SMNDC1	100	75.630	ENSPREG00000012279	smndc1	100	75.630	Poecilia_reticulata
ENSPSIG00000012257	SMNDC1	100	97.479	ENSPPYG00000002643	SMNDC1	100	97.479	Pongo_abelii
ENSPSIG00000012257	SMNDC1	81	96.373	ENSPCAG00000016183	SMNDC1	100	96.373	Procavia_capensis
ENSPSIG00000012257	SMNDC1	100	97.059	ENSPCOG00000024343	SMNDC1	100	97.059	Propithecus_coquereli
ENSPSIG00000012257	SMNDC1	100	74.370	ENSPVAG00000004368	SMNDC1	100	74.370	Pteropus_vampyrus
ENSPSIG00000012257	SMNDC1	92	70.222	ENSPNYG00000024093	smndc1	98	70.222	Pundamilia_nyererei
ENSPSIG00000012257	SMNDC1	100	77.731	ENSPNAG00000025285	smndc1	100	77.731	Pygocentrus_nattereri
ENSPSIG00000012257	SMNDC1	100	97.059	ENSRNOG00000014833	Smndc1	100	97.059	Rattus_norvegicus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSRBIG00000000224	-	100	97.059	Rhinopithecus_bieti
ENSPSIG00000012257	SMNDC1	100	81.092	ENSRBIG00000032452	-	100	81.092	Rhinopithecus_bieti
ENSPSIG00000012257	SMNDC1	100	81.513	ENSRROG00000039125	-	100	81.513	Rhinopithecus_roxellana
ENSPSIG00000012257	SMNDC1	100	97.479	ENSRROG00000044992	-	100	97.479	Rhinopithecus_roxellana
ENSPSIG00000012257	SMNDC1	100	97.479	ENSSBOG00000026789	SMNDC1	100	97.479	Saimiri_boliviensis_boliviensis
ENSPSIG00000012257	SMNDC1	100	98.319	ENSSHAG00000015189	SMNDC1	100	98.319	Sarcophilus_harrisii
ENSPSIG00000012257	SMNDC1	100	81.513	ENSSFOG00015008311	smndc1	100	81.513	Scleropages_formosus
ENSPSIG00000012257	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSPSIG00000012257	SMNDC1	100	77.311	ENSSDUG00000015330	smndc1	100	77.311	Seriola_dumerili
ENSPSIG00000012257	SMNDC1	100	77.311	ENSSLDG00000017325	smndc1	100	77.311	Seriola_lalandi_dorsalis
ENSPSIG00000012257	SMNDC1	100	96.639	ENSSARG00000006063	SMNDC1	100	96.639	Sorex_araneus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSSPUG00000004574	SMNDC1	100	97.479	Sphenodon_punctatus
ENSPSIG00000012257	SMNDC1	100	75.210	ENSSPAG00000000338	smndc1	100	75.210	Stegastes_partitus
ENSPSIG00000012257	SMNDC1	100	97.059	ENSSSCG00000030507	SMNDC1	100	97.059	Sus_scrofa
ENSPSIG00000012257	SMNDC1	100	97.059	ENSTGUG00000010599	SMNDC1	100	97.059	Taeniopygia_guttata
ENSPSIG00000012257	SMNDC1	100	74.790	ENSTRUG00000023281	smndc1	100	74.790	Takifugu_rubripes
ENSPSIG00000012257	SMNDC1	100	75.210	ENSTNIG00000013331	smndc1	100	75.210	Tetraodon_nigroviridis
ENSPSIG00000012257	SMNDC1	100	97.059	ENSTBEG00000014337	SMNDC1	100	97.059	Tupaia_belangeri
ENSPSIG00000012257	SMNDC1	100	97.479	ENSUAMG00000008142	SMNDC1	100	97.479	Ursus_americanus
ENSPSIG00000012257	SMNDC1	100	97.479	ENSUMAG00000023722	SMNDC1	100	97.479	Ursus_maritimus
ENSPSIG00000012257	SMNDC1	83	97.475	ENSVPAG00000003402	SMNDC1	100	97.475	Vicugna_pacos
ENSPSIG00000012257	SMNDC1	100	97.479	ENSVVUG00000007820	SMNDC1	100	97.479	Vulpes_vulpes
ENSPSIG00000012257	SMNDC1	60	83.099	ENSXETG00000015415	SMNDC1	100	83.099	Xenopus_tropicalis
ENSPSIG00000012257	SMNDC1	100	75.630	ENSXCOG00000009159	smndc1	100	75.630	Xiphophorus_couchianus
ENSPSIG00000012257	SMNDC1	100	75.210	ENSXMAG00000012755	smndc1	100	75.210	Xiphophorus_maculatus