EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000012343 (Gene tree)
Gene ID: 102444222
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 50298 bases
Position: chrJH209110.1:1478843-1529140
Accession: 102444222
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000013860	POP1	PF06978.11	1.7e-37	1	2
ENSPSIP00000013860	POP1	PF06978.11	1.7e-37	2	2
ENSPSIP00000013849	POP1	PF06978.11	1.8e-37	1	2
ENSPSIP00000013849	POP1	PF06978.11	1.8e-37	2	2
ENSPSIP00000013860	POPLD	PF08170.12	1.6e-26	1	1
ENSPSIP00000013849	POPLD	PF08170.12	1.6e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000013925	POP1-202	3018	XM_006123924	ENSPSIP00000013860	999 (aa)	XP_006123986	K7G0Q0
ENSPSIT00000013914	POP1-201	3105	-	ENSPSIP00000013849	1028 (aa)	-	K7G0N9

Gene Model

Click here to download ENSPSIG00000012343's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03008	Ribosome biogenesis in eukaryotes	KEGG
pss03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012343's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012343	POP1	100	63.725	ENSG00000104356	POP1	100	66.316	Homo_sapiens
ENSPSIG00000012343	POP1	100	47.871	ENSAPOG00000008198	pop1	100	47.624	Acanthochromis_polyacanthus
ENSPSIG00000012343	POP1	100	62.429	ENSAMEG00000000556	POP1	100	62.429	Ailuropoda_melanoleuca
ENSPSIG00000012343	POP1	89	50.807	ENSACIG00000004169	POP1	100	47.353	Amphilophus_citrinellus
ENSPSIG00000012343	POP1	100	47.822	ENSAOCG00000010991	pop1	100	47.443	Amphiprion_ocellaris
ENSPSIG00000012343	POP1	91	47.763	ENSAPEG00000007607	pop1	95	48.472	Amphiprion_percula
ENSPSIG00000012343	POP1	100	47.588	ENSATEG00000024814	POP1	100	47.615	Anabas_testudineus
ENSPSIG00000012343	POP1	91	71.368	ENSAPLG00000014418	POP1	99	71.166	Anas_platyrhynchos
ENSPSIG00000012343	POP1	100	61.613	ENSACAG00000016083	POP1	100	61.688	Anolis_carolinensis
ENSPSIG00000012343	POP1	89	68.895	ENSANAG00000026360	POP1	99	68.895	Aotus_nancymaae
ENSPSIG00000012343	POP1	100	48.853	ENSACLG00000010951	pop1	100	48.418	Astatotilapia_calliptera
ENSPSIG00000012343	POP1	100	47.407	ENSAMXG00000014483	POP1	100	46.884	Astyanax_mexicanus
ENSPSIG00000012343	POP1	100	62.415	ENSBTAG00000012596	POP1	100	62.891	Bos_taurus
ENSPSIG00000012343	POP1	100	62.791	ENSCJAG00000015567	POP1	100	62.888	Callithrix_jacchus
ENSPSIG00000012343	POP1	100	63.127	ENSCAFG00000000469	POP1	100	63.127	Canis_familiaris
ENSPSIG00000012343	POP1	100	63.158	ENSCAFG00020026765	POP1	100	63.184	Canis_lupus_dingo
ENSPSIG00000012343	POP1	100	62.585	ENSCHIG00000017066	POP1	100	62.768	Capra_hircus
ENSPSIG00000012343	POP1	100	62.355	ENSTSYG00000003097	POP1	100	61.873	Carlito_syrichta
ENSPSIG00000012343	POP1	100	60.330	ENSCAPG00000007251	POP1	100	60.350	Cavia_aperea
ENSPSIG00000012343	POP1	100	62.281	ENSCPOG00000002901	POP1	100	62.305	Cavia_porcellus
ENSPSIG00000012343	POP1	100	62.270	ENSCCAG00000018939	POP1	100	62.270	Cebus_capucinus
ENSPSIG00000012343	POP1	100	63.531	ENSCATG00000040916	POP1	100	63.531	Cercocebus_atys
ENSPSIG00000012343	POP1	100	61.770	ENSCLAG00000007208	POP1	97	62.049	Chinchilla_lanigera
ENSPSIG00000012343	POP1	89	65.835	ENSCSAG00000012340	POP1	99	65.835	Chlorocebus_sabaeus
ENSPSIG00000012343	POP1	88	67.775	ENSCHOG00000011432	POP1	91	71.824	Choloepus_hoffmanni
ENSPSIG00000012343	POP1	100	85.827	ENSCPBG00000006373	POP1	100	86.319	Chrysemys_picta_bellii
ENSPSIG00000012343	POP1	81	38.956	ENSCING00000008323	-	87	38.956	Ciona_intestinalis
ENSPSIG00000012343	POP1	100	63.337	ENSCANG00000001647	POP1	100	63.337	Colobus_angolensis_palliatus
ENSPSIG00000012343	POP1	100	61.465	ENSCGRG00001017308	Pop1	100	61.560	Cricetulus_griseus_chok1gshd
ENSPSIG00000012343	POP1	100	56.197	ENSCGRG00000010824	Pop1	100	56.993	Cricetulus_griseus_crigri
ENSPSIG00000012343	POP1	100	46.344	ENSCSEG00000008737	POP1	100	46.351	Cynoglossus_semilaevis
ENSPSIG00000012343	POP1	100	48.610	ENSCVAG00000022248	pop1	100	48.508	Cyprinodon_variegatus
ENSPSIG00000012343	POP1	100	61.028	ENSDNOG00000019974	POP1	100	61.028	Dasypus_novemcinctus
ENSPSIG00000012343	POP1	100	54.648	ENSDORG00000015384	Pop1	100	54.793	Dipodomys_ordii
ENSPSIG00000012343	POP1	62	34.049	FBgn0026702	l(1)G0045	69	34.059	Drosophila_melanogaster
ENSPSIG00000012343	POP1	90	58.537	ENSETEG00000007839	POP1	88	58.014	Echinops_telfairi
ENSPSIG00000012343	POP1	100	62.791	ENSEASG00005003189	POP1	98	62.779	Equus_asinus_asinus
ENSPSIG00000012343	POP1	100	62.888	ENSECAG00000024236	POP1	100	62.877	Equus_caballus
ENSPSIG00000012343	POP1	59	54.343	ENSEEUG00000003050	-	55	85.542	Erinaceus_europaeus
ENSPSIG00000012343	POP1	100	47.435	ENSELUG00000003526	pop1	100	47.002	Esox_lucius
ENSPSIG00000012343	POP1	100	63.460	ENSFCAG00000002168	POP1	100	63.654	Felis_catus
ENSPSIG00000012343	POP1	100	68.915	ENSFALG00000005711	POP1	100	69.404	Ficedula_albicollis
ENSPSIG00000012343	POP1	100	62.112	ENSFDAG00000017068	POP1	100	62.293	Fukomys_damarensis
ENSPSIG00000012343	POP1	100	48.365	ENSFHEG00000019518	pop1	100	47.981	Fundulus_heteroclitus
ENSPSIG00000012343	POP1	91	46.771	ENSGMOG00000000659	POP1	95	47.034	Gadus_morhua
ENSPSIG00000012343	POP1	100	48.552	ENSGAFG00000019770	POP1	100	48.069	Gambusia_affinis
ENSPSIG00000012343	POP1	100	45.731	ENSGACG00000003499	pop1	100	45.429	Gasterosteus_aculeatus
ENSPSIG00000012343	POP1	100	84.729	ENSGAGG00000011737	POP1	98	84.729	Gopherus_agassizii
ENSPSIG00000012343	POP1	100	63.434	ENSGGOG00000003176	POP1	100	63.434	Gorilla_gorilla
ENSPSIG00000012343	POP1	100	48.757	ENSHBUG00000021583	pop1	100	48.322	Haplochromis_burtoni
ENSPSIG00000012343	POP1	100	61.896	ENSHGLG00000006029	POP1	100	62.076	Heterocephalus_glaber_female
ENSPSIG00000012343	POP1	100	61.896	ENSHGLG00100016879	POP1	100	62.076	Heterocephalus_glaber_male
ENSPSIG00000012343	POP1	90	49.467	ENSHCOG00000013888	pop1	97	49.467	Hippocampus_comes
ENSPSIG00000012343	POP1	100	45.722	ENSIPUG00000018336	pop1	100	45.849	Ictalurus_punctatus
ENSPSIG00000012343	POP1	100	63.434	ENSSTOG00000011455	POP1	97	63.434	Ictidomys_tridecemlineatus
ENSPSIG00000012343	POP1	100	59.883	ENSJJAG00000013325	Pop1	100	59.627	Jaculus_jaculus
ENSPSIG00000012343	POP1	100	48.491	ENSKMAG00000001346	POP1	100	48.541	Kryptolebias_marmoratus
ENSPSIG00000012343	POP1	88	49.616	ENSLBEG00000024457	POP1	95	49.085	Labrus_bergylta
ENSPSIG00000012343	POP1	93	57.231	ENSLACG00000012498	POP1	99	57.436	Latimeria_chalumnae
ENSPSIG00000012343	POP1	100	49.952	ENSLOCG00000009817	POP1	100	50.289	Lepisosteus_oculatus
ENSPSIG00000012343	POP1	100	63.559	ENSLAFG00000010770	POP1	100	63.559	Loxodonta_africana
ENSPSIG00000012343	POP1	100	63.628	ENSMFAG00000000347	POP1	100	63.628	Macaca_fascicularis
ENSPSIG00000012343	POP1	100	63.434	ENSMNEG00000036870	POP1	100	63.434	Macaca_nemestrina
ENSPSIG00000012343	POP1	100	63.531	ENSMLEG00000034986	POP1	100	63.531	Mandrillus_leucophaeus
ENSPSIG00000012343	POP1	100	49.010	ENSMAMG00000004040	pop1	100	48.677	Mastacembelus_armatus
ENSPSIG00000012343	POP1	100	48.757	ENSMZEG00005025448	pop1	100	48.322	Maylandia_zebra
ENSPSIG00000012343	POP1	100	66.762	ENSMGAG00000012167	POP1	100	67.142	Meleagris_gallopavo
ENSPSIG00000012343	POP1	100	62.027	ENSMAUG00000017537	Pop1	100	62.027	Mesocricetus_auratus
ENSPSIG00000012343	POP1	100	62.536	ENSMICG00000004361	POP1	100	62.415	Microcebus_murinus
ENSPSIG00000012343	POP1	100	60.775	ENSMOCG00000006356	Pop1	100	60.397	Microtus_ochrogaster
ENSPSIG00000012343	POP1	90	47.793	ENSMMOG00000018242	pop1	93	48.465	Mola_mola
ENSPSIG00000012343	POP1	100	63.434	ENSMODG00000006561	POP1	100	63.531	Monodelphis_domestica
ENSPSIG00000012343	POP1	100	49.618	ENSMALG00000012621	POP1	100	49.522	Monopterus_albus
ENSPSIG00000012343	POP1	100	60.833	MGP_CAROLIEiJ_G0019726	Pop1	100	60.833	Mus_caroli
ENSPSIG00000012343	POP1	100	60.511	ENSMUSG00000022325	Pop1	100	60.511	Mus_musculus
ENSPSIG00000012343	POP1	100	60.322	MGP_PahariEiJ_G0019735	Pop1	100	60.436	Mus_pahari
ENSPSIG00000012343	POP1	100	61.116	MGP_SPRETEiJ_G0020622	Pop1	100	61.116	Mus_spretus
ENSPSIG00000012343	POP1	100	63.531	ENSMPUG00000015250	POP1	100	63.204	Mustela_putorius_furo
ENSPSIG00000012343	POP1	100	61.531	ENSMLUG00000010204	POP1	100	61.322	Myotis_lucifugus
ENSPSIG00000012343	POP1	100	61.397	ENSNGAG00000001582	Pop1	100	61.397	Nannospalax_galili
ENSPSIG00000012343	POP1	100	46.243	ENSNBRG00000002356	pop1	100	45.761	Neolamprologus_brichardi
ENSPSIG00000012343	POP1	100	62.949	ENSNLEG00000002541	POP1	100	62.924	Nomascus_leucogenys
ENSPSIG00000012343	POP1	95	54.842	ENSMEUG00000003118	POP1	96	59.959	Notamacropus_eugenii
ENSPSIG00000012343	POP1	100	60.215	ENSOPRG00000007667	POP1	100	60.136	Ochotona_princeps
ENSPSIG00000012343	POP1	100	61.203	ENSODEG00000003984	POP1	100	61.300	Octodon_degus
ENSPSIG00000012343	POP1	100	49.331	ENSONIG00000016445	pop1	100	48.995	Oreochromis_niloticus
ENSPSIG00000012343	POP1	61	62.722	ENSOANG00000001278	-	94	68.047	Ornithorhynchus_anatinus
ENSPSIG00000012343	POP1	100	61.524	ENSOCUG00000017400	POP1	100	61.524	Oryctolagus_cuniculus
ENSPSIG00000012343	POP1	100	47.531	ENSORLG00000002839	pop1	100	47.578	Oryzias_latipes
ENSPSIG00000012343	POP1	89	50.054	ENSORLG00020022450	POP1	96	49.946	Oryzias_latipes_hni
ENSPSIG00000012343	POP1	100	47.822	ENSORLG00015012746	POP1	100	47.674	Oryzias_latipes_hsok
ENSPSIG00000012343	POP1	100	48.887	ENSOMEG00000006915	pop1	99	48.438	Oryzias_melastigma
ENSPSIG00000012343	POP1	100	62.115	ENSOGAG00000001466	POP1	100	62.271	Otolemur_garnettii
ENSPSIG00000012343	POP1	100	63.531	ENSPPAG00000018410	POP1	100	63.531	Pan_paniscus
ENSPSIG00000012343	POP1	100	63.398	ENSPPRG00000005002	POP1	100	63.398	Panthera_pardus
ENSPSIG00000012343	POP1	100	63.398	ENSPTIG00000016527	POP1	100	63.592	Panthera_tigris_altaica
ENSPSIG00000012343	POP1	100	63.725	ENSPTRG00000020458	POP1	100	63.725	Pan_troglodytes
ENSPSIG00000012343	POP1	100	63.434	ENSPANG00000009704	POP1	100	63.434	Papio_anubis
ENSPSIG00000012343	POP1	100	49.278	ENSPKIG00000016325	POP1	100	48.893	Paramormyrops_kingsleyae
ENSPSIG00000012343	POP1	89	50.219	ENSPMGG00000022253	POP1	95	50.000	Periophthalmus_magnuspinnatus
ENSPSIG00000012343	POP1	99	61.981	ENSPEMG00000023633	Pop1	100	61.981	Peromyscus_maniculatus_bairdii
ENSPSIG00000012343	POP1	89	43.340	ENSPMAG00000003209	POP1	100	43.129	Petromyzon_marinus
ENSPSIG00000012343	POP1	100	61.405	ENSPCIG00000012216	POP1	100	61.598	Phascolarctos_cinereus
ENSPSIG00000012343	POP1	100	49.711	ENSPFOG00000012490	POP1	100	48.752	Poecilia_formosa
ENSPSIG00000012343	POP1	100	49.229	ENSPLAG00000004646	POP1	100	48.359	Poecilia_latipinna
ENSPSIG00000012343	POP1	100	49.422	ENSPMEG00000019592	POP1	100	48.942	Poecilia_mexicana
ENSPSIG00000012343	POP1	100	49.370	ENSPREG00000020951	POP1	100	48.982	Poecilia_reticulata
ENSPSIG00000012343	POP1	100	63.143	ENSPPYG00000018777	POP1	100	63.143	Pongo_abelii
ENSPSIG00000012343	POP1	100	59.747	ENSPCAG00000016662	POP1	100	59.457	Procavia_capensis
ENSPSIG00000012343	POP1	100	62.439	ENSPCOG00000019420	POP1	100	63.020	Propithecus_coquereli
ENSPSIG00000012343	POP1	100	61.919	ENSPVAG00000014468	POP1	100	62.099	Pteropus_vampyrus
ENSPSIG00000012343	POP1	88	50.110	ENSPNYG00000004476	pop1	95	50.054	Pundamilia_nyererei
ENSPSIG00000012343	POP1	100	45.471	ENSPNAG00000000265	pop1	100	43.611	Pygocentrus_nattereri
ENSPSIG00000012343	POP1	100	61.589	ENSRNOG00000005243	Pop1	100	61.589	Rattus_norvegicus
ENSPSIG00000012343	POP1	100	63.337	ENSRBIG00000007996	POP1	100	63.337	Rhinopithecus_bieti
ENSPSIG00000012343	POP1	100	63.240	ENSRROG00000012334	POP1	100	63.240	Rhinopithecus_roxellana
ENSPSIG00000012343	POP1	99	62.574	ENSSBOG00000020830	POP1	100	62.574	Saimiri_boliviensis_boliviensis
ENSPSIG00000012343	POP1	100	62.741	ENSSHAG00000000296	POP1	100	62.675	Sarcophilus_harrisii
ENSPSIG00000012343	POP1	100	48.077	ENSSFOG00015007429	pop1	99	47.830	Scleropages_formosus
ENSPSIG00000012343	POP1	100	45.736	ENSSMAG00000010467	POP1	95	50.323	Scophthalmus_maximus
ENSPSIG00000012343	POP1	100	47.597	ENSSDUG00000007817	POP1	100	47.909	Seriola_dumerili
ENSPSIG00000012343	POP1	100	47.736	ENSSLDG00000012565	POP1	100	48.053	Seriola_lalandi_dorsalis
ENSPSIG00000012343	POP1	100	69.883	ENSSPUG00000003550	-	100	69.493	Sphenodon_punctatus
ENSPSIG00000012343	POP1	92	49.739	ENSSPAG00000014955	pop1	94	50.976	Stegastes_partitus
ENSPSIG00000012343	POP1	100	62.610	ENSSSCG00000006078	POP1	100	62.120	Sus_scrofa
ENSPSIG00000012343	POP1	91	62.300	ENSTGUG00000012011	-	99	62.191	Taeniopygia_guttata
ENSPSIG00000012343	POP1	89	47.854	ENSTRUG00000010856	pop1	92	48.575	Takifugu_rubripes
ENSPSIG00000012343	POP1	91	47.962	ENSTNIG00000013297	pop1	97	48.254	Tetraodon_nigroviridis
ENSPSIG00000012343	POP1	95	59.756	ENSTBEG00000014214	POP1	95	62.206	Tupaia_belangeri
ENSPSIG00000012343	POP1	100	61.052	ENSTTRG00000016071	POP1	100	61.052	Tursiops_truncatus
ENSPSIG00000012343	POP1	99	61.727	ENSUAMG00000017309	POP1	100	61.713	Ursus_americanus
ENSPSIG00000012343	POP1	100	62.042	ENSUMAG00000016952	POP1	100	69.291	Ursus_maritimus
ENSPSIG00000012343	POP1	83	67.021	ENSVPAG00000008278	POP1	82	67.021	Vicugna_pacos
ENSPSIG00000012343	POP1	100	63.281	ENSVVUG00000010994	POP1	100	63.281	Vulpes_vulpes
ENSPSIG00000012343	POP1	100	44.553	ENSXCOG00000017043	POP1	100	44.358	Xiphophorus_couchianus
ENSPSIG00000012343	POP1	100	47.931	ENSXMAG00000002472	POP1	100	47.642	Xiphophorus_maculatus