EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000012358 (Gene tree)
Gene ID: 102464015
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 12578 bases
Position: chrJH211369.1:2319885-2332462
Accession: 102464015
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000013771	LSM	PF01423.22	5.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000013836	LSM4-201	414	XM_006132293	ENSPSIP00000013771	137 (aa)	XP_006132355	K7G0G1

Gene Model

Click here to download ENSPSIG00000012358's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03018	RNA degradation	KEGG
pss03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012358's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000012358	LSM4	80	33.945	ENSPSIG00000010022	-	56	36.111
ENSPSIG00000012358	LSM4	70	30.303	ENSPSIG00000004458	LSM2	62	34.211
ENSPSIG00000012358	LSM4	51	31.429	ENSPSIG00000000590	LSM10	56	31.429

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012358	LSM4	100	89.855	ENSG00000130520	LSM4	99	81.159	Homo_sapiens
ENSPSIG00000012358	LSM4	72	97.959	ENSAPOG00000005643	lsm4	58	100.000	Acanthochromis_polyacanthus
ENSPSIG00000012358	LSM4	100	89.855	ENSAMEG00000011162	LSM4	95	81.159	Ailuropoda_melanoleuca
ENSPSIG00000012358	LSM4	72	97.959	ENSAOCG00000006414	lsm4	59	100.000	Amphiprion_ocellaris
ENSPSIG00000012358	LSM4	72	97.959	ENSAPEG00000006238	lsm4	94	76.596	Amphiprion_percula
ENSPSIG00000012358	LSM4	72	97.959	ENSATEG00000016559	lsm4	57	100.000	Anabas_testudineus
ENSPSIG00000012358	LSM4	100	89.855	ENSANAG00000034659	LSM4	99	81.159	Aotus_nancymaae
ENSPSIG00000012358	LSM4	96	82.734	ENSACLG00000022738	lsm4	59	100.000	Astatotilapia_calliptera
ENSPSIG00000012358	LSM4	96	90.977	ENSAMXG00000016932	lsm4	94	90.977	Astyanax_mexicanus
ENSPSIG00000012358	LSM4	100	89.855	ENSBTAG00000008578	LSM4	99	81.159	Bos_taurus
ENSPSIG00000012358	LSM4	60	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSPSIG00000012358	LSM4	100	89.855	ENSCJAG00000014171	LSM4	99	81.159	Callithrix_jacchus
ENSPSIG00000012358	LSM4	99	89.781	ENSCAFG00000014900	LSM4	90	81.022	Canis_familiaris
ENSPSIG00000012358	LSM4	100	89.855	ENSCAFG00020012137	LSM4	99	81.159	Canis_lupus_dingo
ENSPSIG00000012358	LSM4	100	89.855	ENSCHIG00000010928	LSM4	91	81.159	Capra_hircus
ENSPSIG00000012358	LSM4	100	89.130	ENSTSYG00000030906	LSM4	99	80.435	Carlito_syrichta
ENSPSIG00000012358	LSM4	100	88.406	ENSCAPG00000014140	LSM4	99	80.435	Cavia_aperea
ENSPSIG00000012358	LSM4	100	88.406	ENSCPOG00000024117	LSM4	99	80.435	Cavia_porcellus
ENSPSIG00000012358	LSM4	100	89.855	ENSCCAG00000036308	LSM4	99	81.159	Cebus_capucinus
ENSPSIG00000012358	LSM4	100	89.855	ENSCATG00000029311	LSM4	99	81.159	Cercocebus_atys
ENSPSIG00000012358	LSM4	100	88.406	ENSCLAG00000010828	LSM4	99	78.986	Chinchilla_lanigera
ENSPSIG00000012358	LSM4	100	89.855	ENSCSAG00000005370	LSM4	99	81.159	Chlorocebus_sabaeus
ENSPSIG00000012358	LSM4	100	99.270	ENSCPBG00000012925	LSM4	99	99.270	Chrysemys_picta_bellii
ENSPSIG00000012358	LSM4	62	92.941	ENSCING00000007519	-	69	93.103	Ciona_intestinalis
ENSPSIG00000012358	LSM4	62	92.941	ENSCSAVG00000008596	-	70	93.103	Ciona_savignyi
ENSPSIG00000012358	LSM4	100	89.855	ENSCANG00000043686	LSM4	99	81.159	Colobus_angolensis_palliatus
ENSPSIG00000012358	LSM4	100	75.182	ENSCGRG00001014436	Lsm4	99	75.182	Cricetulus_griseus_chok1gshd
ENSPSIG00000012358	LSM4	100	75.182	ENSCGRG00000009398	Lsm4	100	75.182	Cricetulus_griseus_crigri
ENSPSIG00000012358	LSM4	70	96.875	ENSCSEG00000016127	lsm4	94	85.075	Cynoglossus_semilaevis
ENSPSIG00000012358	LSM4	86	80.992	ENSCVAG00000021828	lsm4	56	98.630	Cyprinodon_variegatus
ENSPSIG00000012358	LSM4	96	87.407	ENSCVAG00000010601	lsm4	61	98.851	Cyprinodon_variegatus
ENSPSIG00000012358	LSM4	99	85.211	ENSDARG00000023852	lsm4	98	85.000	Danio_rerio
ENSPSIG00000012358	LSM4	100	88.406	ENSDORG00000024225	Lsm4	99	79.710	Dipodomys_ordii
ENSPSIG00000012358	LSM4	77	77.358	FBgn0032240	CG17768	56	87.356	Drosophila_melanogaster
ENSPSIG00000012358	LSM4	90	76.613	ENSETEG00000007762	-	100	79.032	Echinops_telfairi
ENSPSIG00000012358	LSM4	54	93.243	ENSEBUG00000003639	-	52	88.608	Eptatretus_burgeri
ENSPSIG00000012358	LSM4	100	78.986	ENSECAG00000010141	LSM4	56	81.159	Equus_caballus
ENSPSIG00000012358	LSM4	96	90.226	ENSELUG00000012821	lsm4	100	85.714	Esox_lucius
ENSPSIG00000012358	LSM4	100	89.855	ENSFCAG00000040580	LSM4	99	81.159	Felis_catus
ENSPSIG00000012358	LSM4	100	98.540	ENSFALG00000009478	LSM4	99	98.540	Ficedula_albicollis
ENSPSIG00000012358	LSM4	100	88.406	ENSFDAG00000010124	LSM4	100	80.435	Fukomys_damarensis
ENSPSIG00000012358	LSM4	70	98.958	ENSGMOG00000007729	lsm4	59	100.000	Gadus_morhua
ENSPSIG00000012358	LSM4	100	98.540	ENSGALG00000003385	LSM4	99	98.540	Gallus_gallus
ENSPSIG00000012358	LSM4	96	85.926	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSPSIG00000012358	LSM4	69	98.936	ENSGACG00000008140	lsm4	58	100.000	Gasterosteus_aculeatus
ENSPSIG00000012358	LSM4	100	99.270	ENSGAGG00000017812	LSM4	99	99.270	Gopherus_agassizii
ENSPSIG00000012358	LSM4	100	89.855	ENSGGOG00000012914	-	99	81.159	Gorilla_gorilla
ENSPSIG00000012358	LSM4	96	83.333	ENSHBUG00000008858	lsm4	61	95.370	Haplochromis_burtoni
ENSPSIG00000012358	LSM4	100	84.058	ENSHGLG00000006568	LSM4	99	78.986	Heterocephalus_glaber_female
ENSPSIG00000012358	LSM4	67	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSPSIG00000012358	LSM4	72	97.959	ENSHCOG00000008819	lsm4	61	100.000	Hippocampus_comes
ENSPSIG00000012358	LSM4	96	90.977	ENSIPUG00000005368	Lsm4	94	90.977	Ictalurus_punctatus
ENSPSIG00000012358	LSM4	100	89.855	ENSSTOG00000016494	LSM4	99	81.159	Ictidomys_tridecemlineatus
ENSPSIG00000012358	LSM4	100	87.681	ENSJJAG00000017420	Lsm4	99	79.710	Jaculus_jaculus
ENSPSIG00000012358	LSM4	62	98.824	ENSKMAG00000005073	lsm4	60	98.851	Kryptolebias_marmoratus
ENSPSIG00000012358	LSM4	72	97.959	ENSLBEG00000027930	lsm4	58	100.000	Labrus_bergylta
ENSPSIG00000012358	LSM4	97	96.269	ENSLACG00000015861	LSM4	96	96.269	Latimeria_chalumnae
ENSPSIG00000012358	LSM4	93	93.701	ENSLOCG00000002025	lsm4	94	93.182	Lepisosteus_oculatus
ENSPSIG00000012358	LSM4	100	78.986	ENSLAFG00000017459	LSM4	99	81.159	Loxodonta_africana
ENSPSIG00000012358	LSM4	100	89.855	ENSMFAG00000031194	LSM4	99	81.159	Macaca_fascicularis
ENSPSIG00000012358	LSM4	100	89.855	ENSMMUG00000004405	LSM4	99	81.159	Macaca_mulatta
ENSPSIG00000012358	LSM4	100	89.855	ENSMNEG00000042899	LSM4	99	81.159	Macaca_nemestrina
ENSPSIG00000012358	LSM4	100	89.855	ENSMLEG00000027948	LSM4	99	81.159	Mandrillus_leucophaeus
ENSPSIG00000012358	LSM4	96	88.060	ENSMAMG00000006190	lsm4	94	79.699	Mastacembelus_armatus
ENSPSIG00000012358	LSM4	96	83.333	ENSMZEG00005016420	lsm4	60	100.000	Maylandia_zebra
ENSPSIG00000012358	LSM4	100	97.826	ENSMGAG00000004976	LSM4	99	97.826	Meleagris_gallopavo
ENSPSIG00000012358	LSM4	100	89.130	ENSMICG00000000222	LSM4	99	80.435	Microcebus_murinus
ENSPSIG00000012358	LSM4	100	75.182	ENSMOCG00000020861	Lsm4	99	75.182	Microtus_ochrogaster
ENSPSIG00000012358	LSM4	90	79.032	ENSMODG00000015044	-	100	91.129	Monodelphis_domestica
ENSPSIG00000012358	LSM4	96	83.704	ENSMALG00000018159	lsm4	94	85.185	Monopterus_albus
ENSPSIG00000012358	LSM4	100	75.182	MGP_CAROLIEiJ_G0031158	Lsm4	99	75.182	Mus_caroli
ENSPSIG00000012358	LSM4	100	75.182	ENSMUSG00000031848	Lsm4	99	75.182	Mus_musculus
ENSPSIG00000012358	LSM4	100	75.182	MGP_PahariEiJ_G0021623	Lsm4	99	75.182	Mus_pahari
ENSPSIG00000012358	LSM4	100	75.182	MGP_SPRETEiJ_G0032276	Lsm4	99	75.182	Mus_spretus
ENSPSIG00000012358	LSM4	100	89.855	ENSMPUG00000015589	LSM4	99	81.159	Mustela_putorius_furo
ENSPSIG00000012358	LSM4	100	89.855	ENSMLUG00000004010	LSM4	99	81.159	Myotis_lucifugus
ENSPSIG00000012358	LSM4	100	87.681	ENSNGAG00000008644	Lsm4	100	78.195	Nannospalax_galili
ENSPSIG00000012358	LSM4	72	97.959	ENSNBRG00000022150	lsm4	54	100.000	Neolamprologus_brichardi
ENSPSIG00000012358	LSM4	90	75.806	ENSMEUG00000013229	LSM4	100	77.419	Notamacropus_eugenii
ENSPSIG00000012358	LSM4	90	82.258	ENSOPRG00000005575	LSM4	100	73.171	Ochotona_princeps
ENSPSIG00000012358	LSM4	100	88.406	ENSODEG00000020549	-	99	79.710	Octodon_degus
ENSPSIG00000012358	LSM4	100	81.752	ENSODEG00000004519	-	99	71.739	Octodon_degus
ENSPSIG00000012358	LSM4	96	82.734	ENSONIG00000012724	lsm4	59	100.000	Oreochromis_niloticus
ENSPSIG00000012358	LSM4	81	93.913	ENSOANG00000007434	LSM4	99	93.913	Ornithorhynchus_anatinus
ENSPSIG00000012358	LSM4	100	85.401	ENSORLG00000008391	lsm4	94	82.482	Oryzias_latipes
ENSPSIG00000012358	LSM4	100	85.401	ENSORLG00020014829	lsm4	94	82.482	Oryzias_latipes_hni
ENSPSIG00000012358	LSM4	100	85.401	ENSORLG00015010205	lsm4	94	82.482	Oryzias_latipes_hsok
ENSPSIG00000012358	LSM4	100	84.672	ENSOMEG00000003606	lsm4	94	81.752	Oryzias_melastigma
ENSPSIG00000012358	LSM4	72	96.970	ENSOGAG00000027992	LSM4	89	80.000	Otolemur_garnettii
ENSPSIG00000012358	LSM4	64	98.851	ENSOARG00000012553	LSM4	94	79.832	Ovis_aries
ENSPSIG00000012358	LSM4	100	89.855	ENSPPAG00000044045	-	99	81.159	Pan_paniscus
ENSPSIG00000012358	LSM4	100	89.855	ENSPPRG00000018264	LSM4	99	81.159	Panthera_pardus
ENSPSIG00000012358	LSM4	100	89.855	ENSPTIG00000006306	LSM4	100	81.159	Panthera_tigris_altaica
ENSPSIG00000012358	LSM4	100	89.855	ENSPTRG00000031470	LSM4	99	81.159	Pan_troglodytes
ENSPSIG00000012358	LSM4	100	89.855	ENSPANG00000014399	LSM4	99	81.159	Papio_anubis
ENSPSIG00000012358	LSM4	96	92.424	ENSPKIG00000006154	lsm4	94	92.424	Paramormyrops_kingsleyae
ENSPSIG00000012358	LSM4	100	75.182	ENSPEMG00000001358	Lsm4	99	75.182	Peromyscus_maniculatus_bairdii
ENSPSIG00000012358	LSM4	96	87.407	ENSPLAG00000016267	lsm4	61	100.000	Poecilia_latipinna
ENSPSIG00000012358	LSM4	96	86.667	ENSPMEG00000016378	lsm4	63	100.000	Poecilia_mexicana
ENSPSIG00000012358	LSM4	100	89.855	ENSPPYG00000009736	LSM4	99	81.159	Pongo_abelii
ENSPSIG00000012358	LSM4	90	76.613	ENSPCAG00000008513	LSM4	100	79.032	Procavia_capensis
ENSPSIG00000012358	LSM4	100	89.130	ENSPCOG00000019837	LSM4	99	80.435	Propithecus_coquereli
ENSPSIG00000012358	LSM4	100	89.855	ENSPVAG00000015383	LSM4	99	81.159	Pteropus_vampyrus
ENSPSIG00000012358	LSM4	96	83.333	ENSPNYG00000016794	lsm4	60	100.000	Pundamilia_nyererei
ENSPSIG00000012358	LSM4	96	88.722	ENSPNAG00000016598	lsm4	99	84.962	Pygocentrus_nattereri
ENSPSIG00000012358	LSM4	100	75.182	ENSRNOG00000019572	Lsm4	99	75.182	Rattus_norvegicus
ENSPSIG00000012358	LSM4	100	89.855	ENSRBIG00000024717	LSM4	99	81.159	Rhinopithecus_bieti
ENSPSIG00000012358	LSM4	100	89.855	ENSRROG00000045706	LSM4	99	81.159	Rhinopithecus_roxellana
ENSPSIG00000012358	LSM4	60	40.217	YER112W	LSM4	51	40.000	Saccharomyces_cerevisiae
ENSPSIG00000012358	LSM4	91	88.800	ENSSBOG00000022455	LSM4	100	79.200	Saimiri_boliviensis_boliviensis
ENSPSIG00000012358	LSM4	100	95.652	ENSSHAG00000011559	LSM4	99	95.652	Sarcophilus_harrisii
ENSPSIG00000012358	LSM4	96	90.152	ENSSFOG00015021067	lsm4	94	90.152	Scleropages_formosus
ENSPSIG00000012358	LSM4	72	96.939	ENSSMAG00000021020	lsm4	86	80.620	Scophthalmus_maximus
ENSPSIG00000012358	LSM4	72	97.959	ENSSDUG00000009588	lsm4	52	100.000	Seriola_dumerili
ENSPSIG00000012358	LSM4	72	97.959	ENSSLDG00000006827	lsm4	52	100.000	Seriola_lalandi_dorsalis
ENSPSIG00000012358	LSM4	64	100.000	ENSSPUG00000010166	LSM4	56	100.000	Sphenodon_punctatus
ENSPSIG00000012358	LSM4	72	97.959	ENSSPAG00000011615	lsm4	58	100.000	Stegastes_partitus
ENSPSIG00000012358	LSM4	100	89.855	ENSSSCG00000034314	LSM4	99	81.159	Sus_scrofa
ENSPSIG00000012358	LSM4	96	85.926	ENSTRUG00000021737	lsm4	61	97.701	Takifugu_rubripes
ENSPSIG00000012358	LSM4	96	83.704	ENSTNIG00000010191	lsm4	94	83.704	Tetraodon_nigroviridis
ENSPSIG00000012358	LSM4	100	89.855	ENSUAMG00000000665	LSM4	90	97.248	Ursus_americanus
ENSPSIG00000012358	LSM4	100	89.855	ENSUMAG00000009013	LSM4	99	81.159	Ursus_maritimus
ENSPSIG00000012358	LSM4	100	89.855	ENSVVUG00000008136	LSM4	71	81.159	Vulpes_vulpes
ENSPSIG00000012358	LSM4	100	94.161	ENSXETG00000024933	lsm4	99	94.161	Xenopus_tropicalis