EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000012563 (Gene tree)
Gene ID: -
Gene Symbol: LSM1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 4839 bases
Position: chrJH211935.1:359907-364745
Accession: 102461981
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000014022	LSM	PF01423.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000014087	LSM1-201	393	XM_006134052	ENSPSIP00000014022	130 (aa)	-	K7G162

Gene Model

Click here to download ENSPSIG00000012563's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012563's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000012563	LSM1	51	34.328	ENSPSIG00000017054	LSM8	89	34.328

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012563	LSM1	99	89.231	ENSG00000175324	LSM1	98	89.231	Homo_sapiens
ENSPSIG00000012563	LSM1	99	80.000	ENSAPOG00000010833	lsm1	98	80.000	Acanthochromis_polyacanthus
ENSPSIG00000012563	LSM1	99	89.231	ENSAMEG00000011141	LSM1	98	89.231	Ailuropoda_melanoleuca
ENSPSIG00000012563	LSM1	55	84.932	ENSACIG00000019593	lsm1	61	84.932	Amphilophus_citrinellus
ENSPSIG00000012563	LSM1	99	80.000	ENSAOCG00000017997	-	98	80.000	Amphiprion_ocellaris
ENSPSIG00000012563	LSM1	99	80.000	ENSAOCG00000017096	lsm1	98	80.000	Amphiprion_ocellaris
ENSPSIG00000012563	LSM1	99	80.000	ENSAPEG00000011669	lsm1	98	80.000	Amphiprion_percula
ENSPSIG00000012563	LSM1	98	80.620	ENSATEG00000022266	lsm1	97	80.620	Anabas_testudineus
ENSPSIG00000012563	LSM1	99	89.231	ENSANAG00000027785	LSM1	98	89.231	Aotus_nancymaae
ENSPSIG00000012563	LSM1	98	80.620	ENSACLG00000011400	lsm1	97	80.620	Astatotilapia_calliptera
ENSPSIG00000012563	LSM1	98	82.946	ENSAMXG00000005441	lsm1	97	82.946	Astyanax_mexicanus
ENSPSIG00000012563	LSM1	99	88.462	ENSBTAG00000001612	LSM1	98	88.462	Bos_taurus
ENSPSIG00000012563	LSM1	81	51.402	WBGene00003076	lsm-1	82	51.402	Caenorhabditis_elegans
ENSPSIG00000012563	LSM1	99	88.462	ENSCJAG00000048015	LSM1	98	88.462	Callithrix_jacchus
ENSPSIG00000012563	LSM1	99	89.231	ENSCAFG00000006113	LSM1	98	89.231	Canis_familiaris
ENSPSIG00000012563	LSM1	99	89.231	ENSCAFG00020001822	LSM1	98	89.231	Canis_lupus_dingo
ENSPSIG00000012563	LSM1	99	89.231	ENSCHIG00000013194	LSM1	98	89.231	Capra_hircus
ENSPSIG00000012563	LSM1	99	89.231	ENSTSYG00000010394	LSM1	98	89.231	Carlito_syrichta
ENSPSIG00000012563	LSM1	99	89.231	ENSCPOG00000032671	LSM1	98	89.231	Cavia_porcellus
ENSPSIG00000012563	LSM1	99	89.231	ENSCCAG00000037171	LSM1	98	89.231	Cebus_capucinus
ENSPSIG00000012563	LSM1	99	89.231	ENSCATG00000020377	LSM1	98	89.231	Cercocebus_atys
ENSPSIG00000012563	LSM1	99	87.692	ENSCLAG00000001137	LSM1	98	87.692	Chinchilla_lanigera
ENSPSIG00000012563	LSM1	99	89.231	ENSCSAG00000015485	LSM1	98	89.231	Chlorocebus_sabaeus
ENSPSIG00000012563	LSM1	99	88.462	ENSCHOG00000006030	LSM1	98	88.462	Choloepus_hoffmanni
ENSPSIG00000012563	LSM1	98	97.638	ENSCPBG00000006569	LSM1	86	97.638	Chrysemys_picta_bellii
ENSPSIG00000012563	LSM1	98	62.791	ENSCING00000013536	-	97	62.791	Ciona_intestinalis
ENSPSIG00000012563	LSM1	99	89.231	ENSCANG00000019173	LSM1	98	89.231	Colobus_angolensis_palliatus
ENSPSIG00000012563	LSM1	82	72.973	ENSCGRG00001002259	-	97	72.973	Cricetulus_griseus_chok1gshd
ENSPSIG00000012563	LSM1	99	88.462	ENSCGRG00001024560	-	98	88.462	Cricetulus_griseus_chok1gshd
ENSPSIG00000012563	LSM1	82	72.973	ENSCGRG00000013603	-	97	72.973	Cricetulus_griseus_crigri
ENSPSIG00000012563	LSM1	99	88.462	ENSCGRG00000006554	-	98	88.462	Cricetulus_griseus_crigri
ENSPSIG00000012563	LSM1	99	79.231	ENSCSEG00000010570	lsm1	90	79.231	Cynoglossus_semilaevis
ENSPSIG00000012563	LSM1	99	78.462	ENSCSEG00000008319	lsm1	90	78.462	Cynoglossus_semilaevis
ENSPSIG00000012563	LSM1	98	79.845	ENSCVAG00000003871	lsm1	97	79.845	Cyprinodon_variegatus
ENSPSIG00000012563	LSM1	98	82.171	ENSDARG00000043177	lsm1	97	82.171	Danio_rerio
ENSPSIG00000012563	LSM1	88	68.966	ENSDNOG00000046620	-	97	68.966	Dasypus_novemcinctus
ENSPSIG00000012563	LSM1	99	89.231	ENSDNOG00000046387	-	98	89.231	Dasypus_novemcinctus
ENSPSIG00000012563	LSM1	99	89.231	ENSDNOG00000032911	-	98	89.231	Dasypus_novemcinctus
ENSPSIG00000012563	LSM1	98	84.375	ENSDNOG00000030989	-	96	84.375	Dasypus_novemcinctus
ENSPSIG00000012563	LSM1	99	89.231	ENSDORG00000028172	Lsm1	98	89.231	Dipodomys_ordii
ENSPSIG00000012563	LSM1	84	67.890	FBgn0261067	LSm1	80	67.890	Drosophila_melanogaster
ENSPSIG00000012563	LSM1	99	87.692	ENSEASG00005016677	LSM1	98	87.692	Equus_asinus_asinus
ENSPSIG00000012563	LSM1	99	87.692	ENSECAG00000010461	LSM1	98	87.692	Equus_caballus
ENSPSIG00000012563	LSM1	99	61.538	ENSEEUG00000015181	LSM1	97	61.538	Erinaceus_europaeus
ENSPSIG00000012563	LSM1	98	80.620	ENSELUG00000002322	lsm1	97	80.620	Esox_lucius
ENSPSIG00000012563	LSM1	98	75.194	ENSELUG00000023374	lsm1	97	75.194	Esox_lucius
ENSPSIG00000012563	LSM1	99	89.231	ENSFCAG00000039335	LSM1	98	89.231	Felis_catus
ENSPSIG00000012563	LSM1	91	98.305	ENSFALG00000006723	LSM1	100	98.305	Ficedula_albicollis
ENSPSIG00000012563	LSM1	99	89.231	ENSFDAG00000007658	LSM1	98	89.231	Fukomys_damarensis
ENSPSIG00000012563	LSM1	98	79.845	ENSFHEG00000009556	lsm1	97	79.845	Fundulus_heteroclitus
ENSPSIG00000012563	LSM1	98	78.295	ENSGMOG00000016651	lsm1	95	78.295	Gadus_morhua
ENSPSIG00000012563	LSM1	99	89.231	ENSGALG00000003245	LSM1	98	89.231	Gallus_gallus
ENSPSIG00000012563	LSM1	98	79.845	ENSGAFG00000011355	lsm1	97	79.845	Gambusia_affinis
ENSPSIG00000012563	LSM1	98	80.620	ENSGACG00000011763	lsm1	95	80.620	Gasterosteus_aculeatus
ENSPSIG00000012563	LSM1	99	93.077	ENSGAGG00000024065	LSM1	98	93.077	Gopherus_agassizii
ENSPSIG00000012563	LSM1	99	89.231	ENSGGOG00000022658	LSM1	98	89.231	Gorilla_gorilla
ENSPSIG00000012563	LSM1	98	80.620	ENSHBUG00000010897	lsm1	97	80.620	Haplochromis_burtoni
ENSPSIG00000012563	LSM1	85	84.545	ENSHGLG00000017574	-	93	84.545	Heterocephalus_glaber_female
ENSPSIG00000012563	LSM1	99	89.231	ENSHGLG00000005711	LSM1	98	89.231	Heterocephalus_glaber_female
ENSPSIG00000012563	LSM1	85	84.545	ENSHGLG00100012152	-	93	84.545	Heterocephalus_glaber_male
ENSPSIG00000012563	LSM1	99	89.231	ENSHGLG00100017660	LSM1	98	89.231	Heterocephalus_glaber_male
ENSPSIG00000012563	LSM1	99	79.231	ENSHCOG00000017233	lsm1	98	79.231	Hippocampus_comes
ENSPSIG00000012563	LSM1	98	81.395	ENSIPUG00000002312	LSM1	97	81.395	Ictalurus_punctatus
ENSPSIG00000012563	LSM1	55	87.671	ENSSTOG00000026870	LSM1	89	87.671	Ictidomys_tridecemlineatus
ENSPSIG00000012563	LSM1	99	87.692	ENSJJAG00000014605	-	98	87.692	Jaculus_jaculus
ENSPSIG00000012563	LSM1	98	80.620	ENSKMAG00000003016	lsm1	97	80.620	Kryptolebias_marmoratus
ENSPSIG00000012563	LSM1	98	80.620	ENSLBEG00000022352	lsm1	97	80.620	Labrus_bergylta
ENSPSIG00000012563	LSM1	93	90.909	ENSLACG00000010947	LSM1	100	90.909	Latimeria_chalumnae
ENSPSIG00000012563	LSM1	99	86.923	ENSLOCG00000015149	lsm1	98	86.923	Lepisosteus_oculatus
ENSPSIG00000012563	LSM1	99	89.231	ENSLAFG00000003534	LSM1	98	89.231	Loxodonta_africana
ENSPSIG00000012563	LSM1	99	89.231	ENSMFAG00000032661	LSM1	98	89.231	Macaca_fascicularis
ENSPSIG00000012563	LSM1	99	89.231	ENSMLEG00000034535	LSM1	98	89.231	Mandrillus_leucophaeus
ENSPSIG00000012563	LSM1	99	80.000	ENSMAMG00000007464	lsm1	98	80.000	Mastacembelus_armatus
ENSPSIG00000012563	LSM1	98	80.620	ENSMZEG00005010321	lsm1	97	80.620	Maylandia_zebra
ENSPSIG00000012563	LSM1	99	89.231	ENSMGAG00000002125	LSM1	98	89.231	Meleagris_gallopavo
ENSPSIG00000012563	LSM1	99	88.462	ENSMICG00000030726	LSM1	98	88.462	Microcebus_murinus
ENSPSIG00000012563	LSM1	99	88.462	ENSMOCG00000022817	Lsm1	98	88.462	Microtus_ochrogaster
ENSPSIG00000012563	LSM1	98	81.395	ENSMMOG00000015466	lsm1	97	81.395	Mola_mola
ENSPSIG00000012563	LSM1	99	91.538	ENSMODG00000010732	-	98	91.538	Monodelphis_domestica
ENSPSIG00000012563	LSM1	55	84.932	ENSMALG00000001478	lsm1	78	84.932	Monopterus_albus
ENSPSIG00000012563	LSM1	99	86.923	MGP_CAROLIEiJ_G0030930	Lsm1	98	86.923	Mus_caroli
ENSPSIG00000012563	LSM1	99	86.923	ENSMUSG00000037296	Lsm1	98	86.923	Mus_musculus
ENSPSIG00000012563	LSM1	99	86.923	MGP_PahariEiJ_G0021400	Lsm1	98	86.923	Mus_pahari
ENSPSIG00000012563	LSM1	99	86.923	MGP_SPRETEiJ_G0032049	Lsm1	98	86.923	Mus_spretus
ENSPSIG00000012563	LSM1	99	90.000	ENSMPUG00000009883	LSM1	98	90.000	Mustela_putorius_furo
ENSPSIG00000012563	LSM1	99	89.231	ENSMLUG00000003734	LSM1	98	89.231	Myotis_lucifugus
ENSPSIG00000012563	LSM1	99	88.462	ENSNGAG00000003753	Lsm1	98	88.462	Nannospalax_galili
ENSPSIG00000012563	LSM1	55	84.932	ENSNBRG00000017370	lsm1	63	84.932	Neolamprologus_brichardi
ENSPSIG00000012563	LSM1	99	89.231	ENSNLEG00000029390	LSM1	98	89.231	Nomascus_leucogenys
ENSPSIG00000012563	LSM1	99	91.538	ENSMEUG00000014077	LSM1	98	91.538	Notamacropus_eugenii
ENSPSIG00000012563	LSM1	90	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSPSIG00000012563	LSM1	99	89.231	ENSODEG00000004834	LSM1	98	89.231	Octodon_degus
ENSPSIG00000012563	LSM1	98	80.620	ENSONIG00000010782	lsm1	97	80.620	Oreochromis_niloticus
ENSPSIG00000012563	LSM1	99	90.769	ENSOANG00000003256	LSM1	98	90.769	Ornithorhynchus_anatinus
ENSPSIG00000012563	LSM1	99	89.231	ENSOCUG00000015399	LSM1	98	89.231	Oryctolagus_cuniculus
ENSPSIG00000012563	LSM1	98	82.171	ENSORLG00000030288	lsm1	97	82.171	Oryzias_latipes
ENSPSIG00000012563	LSM1	98	82.171	ENSORLG00020003941	lsm1	97	82.171	Oryzias_latipes_hni
ENSPSIG00000012563	LSM1	99	80.000	ENSORLG00020006213	-	84	80.000	Oryzias_latipes_hni
ENSPSIG00000012563	LSM1	98	82.171	ENSORLG00015018350	lsm1	97	82.171	Oryzias_latipes_hsok
ENSPSIG00000012563	LSM1	98	80.620	ENSOMEG00000012454	lsm1	97	80.620	Oryzias_melastigma
ENSPSIG00000012563	LSM1	99	89.231	ENSOGAG00000015161	LSM1	98	89.231	Otolemur_garnettii
ENSPSIG00000012563	LSM1	99	89.231	ENSOARG00000001317	LSM1	98	89.231	Ovis_aries
ENSPSIG00000012563	LSM1	99	89.231	ENSPPAG00000032279	LSM1	98	89.231	Pan_paniscus
ENSPSIG00000012563	LSM1	99	89.231	ENSPPRG00000014172	-	98	89.231	Panthera_pardus
ENSPSIG00000012563	LSM1	99	89.231	ENSPTIG00000010289	LSM1	98	89.231	Panthera_tigris_altaica
ENSPSIG00000012563	LSM1	99	89.231	ENSPTRG00000020169	LSM1	98	89.231	Pan_troglodytes
ENSPSIG00000012563	LSM1	99	89.231	ENSPANG00000008814	LSM1	98	89.231	Papio_anubis
ENSPSIG00000012563	LSM1	99	83.846	ENSPKIG00000001839	lsm1	98	83.846	Paramormyrops_kingsleyae
ENSPSIG00000012563	LSM1	98	79.070	ENSPKIG00000019409	LSM1	96	79.070	Paramormyrops_kingsleyae
ENSPSIG00000012563	LSM1	56	83.784	ENSPMGG00000022999	lsm1	70	83.784	Periophthalmus_magnuspinnatus
ENSPSIG00000012563	LSM1	87	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSPSIG00000012563	LSM1	99	90.000	ENSPCIG00000008880	LSM1	98	90.000	Phascolarctos_cinereus
ENSPSIG00000012563	LSM1	98	79.845	ENSPFOG00000016029	lsm1	97	79.845	Poecilia_formosa
ENSPSIG00000012563	LSM1	98	79.845	ENSPLAG00000007879	lsm1	97	79.845	Poecilia_latipinna
ENSPSIG00000012563	LSM1	98	79.845	ENSPMEG00000023550	lsm1	97	79.845	Poecilia_mexicana
ENSPSIG00000012563	LSM1	98	79.845	ENSPREG00000009574	lsm1	97	79.845	Poecilia_reticulata
ENSPSIG00000012563	LSM1	99	89.231	ENSPPYG00000018521	LSM1	98	89.231	Pongo_abelii
ENSPSIG00000012563	LSM1	99	89.231	ENSPCOG00000020901	-	98	89.231	Propithecus_coquereli
ENSPSIG00000012563	LSM1	99	89.231	ENSPVAG00000006016	LSM1	98	89.231	Pteropus_vampyrus
ENSPSIG00000012563	LSM1	98	80.620	ENSPNYG00000018067	lsm1	97	80.620	Pundamilia_nyererei
ENSPSIG00000012563	LSM1	98	82.171	ENSPNAG00000013707	lsm1	97	82.171	Pygocentrus_nattereri
ENSPSIG00000012563	LSM1	99	87.692	ENSRNOG00000015375	Lsm1	98	87.692	Rattus_norvegicus
ENSPSIG00000012563	LSM1	99	89.231	ENSRBIG00000027449	LSM1	98	89.231	Rhinopithecus_bieti
ENSPSIG00000012563	LSM1	99	89.231	ENSRROG00000036074	LSM1	98	89.231	Rhinopithecus_roxellana
ENSPSIG00000012563	LSM1	87	43.333	YJL124C	LSM1	69	43.333	Saccharomyces_cerevisiae
ENSPSIG00000012563	LSM1	99	91.538	ENSSHAG00000017260	LSM1	98	91.538	Sarcophilus_harrisii
ENSPSIG00000012563	LSM1	99	83.846	ENSSFOG00015019528	lsm1	98	83.846	Scleropages_formosus
ENSPSIG00000012563	LSM1	98	80.620	ENSSMAG00000004930	lsm1	97	80.620	Scophthalmus_maximus
ENSPSIG00000012563	LSM1	99	80.000	ENSSDUG00000021823	lsm1	98	80.000	Seriola_dumerili
ENSPSIG00000012563	LSM1	99	80.000	ENSSLDG00000012154	lsm1	98	80.000	Seriola_lalandi_dorsalis
ENSPSIG00000012563	LSM1	99	93.077	ENSSPUG00000014878	LSM1	98	93.077	Sphenodon_punctatus
ENSPSIG00000012563	LSM1	99	79.231	ENSSPAG00000020548	lsm1	98	79.231	Stegastes_partitus
ENSPSIG00000012563	LSM1	99	89.231	ENSSSCG00000039058	LSM1	98	89.231	Sus_scrofa
ENSPSIG00000012563	LSM1	99	92.308	ENSTGUG00000004793	LSM1	98	92.308	Taeniopygia_guttata
ENSPSIG00000012563	LSM1	98	82.946	ENSTRUG00000025239	lsm1	97	82.946	Takifugu_rubripes
ENSPSIG00000012563	LSM1	98	82.946	ENSTNIG00000004055	lsm1	97	82.946	Tetraodon_nigroviridis
ENSPSIG00000012563	LSM1	90	94.017	ENSTBEG00000015884	LSM1	100	94.017	Tupaia_belangeri
ENSPSIG00000012563	LSM1	99	89.231	ENSTTRG00000004482	LSM1	98	89.231	Tursiops_truncatus
ENSPSIG00000012563	LSM1	99	89.231	ENSUAMG00000004103	LSM1	98	89.231	Ursus_americanus
ENSPSIG00000012563	LSM1	99	89.231	ENSUMAG00000009132	LSM1	98	89.231	Ursus_maritimus
ENSPSIG00000012563	LSM1	56	87.671	ENSVPAG00000011593	LSM1	96	87.671	Vicugna_pacos
ENSPSIG00000012563	LSM1	62	62.195	ENSVVUG00000014880	-	87	62.195	Vulpes_vulpes
ENSPSIG00000012563	LSM1	99	89.231	ENSVVUG00000020191	LSM1	98	89.231	Vulpes_vulpes
ENSPSIG00000012563	LSM1	99	86.567	ENSXETG00000009004	lsm1	98	86.567	Xenopus_tropicalis
ENSPSIG00000012563	LSM1	98	79.070	ENSXCOG00000015631	lsm1	97	79.070	Xiphophorus_couchianus
ENSPSIG00000012563	LSM1	98	79.070	ENSXMAG00000026637	lsm1	97	79.070	Xiphophorus_maculatus