EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000012877 (Gene tree)
Gene ID: 102455764
Gene Symbol: TRUB1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 40809 bases
Position: chrJH212492.1:994663-1035471
Accession: 102455764
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000014353	TruB_N	PF01509.18	2.5e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000014421	TRUB1-201	1112	XM_006134959	ENSPSIP00000014353	290 (aa)	XP_006135021	K7G242

Gene Model

Click here to download ENSPSIG00000012877's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012877's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012877	TRUB1	93	77.206	ENSG00000165832	TRUB1	78	77.206	Homo_sapiens
ENSPSIG00000012877	TRUB1	83	71.488	ENSAPOG00000020565	trub1	91	70.400	Acanthochromis_polyacanthus
ENSPSIG00000012877	TRUB1	93	76.277	ENSAMEG00000014931	TRUB1	78	76.277	Ailuropoda_melanoleuca
ENSPSIG00000012877	TRUB1	86	64.800	ENSACIG00000003060	trub1	83	64.800	Amphilophus_citrinellus
ENSPSIG00000012877	TRUB1	83	71.488	ENSAOCG00000017188	trub1	91	70.400	Amphiprion_ocellaris
ENSPSIG00000012877	TRUB1	86	70.000	ENSAPEG00000015209	trub1	91	70.000	Amphiprion_percula
ENSPSIG00000012877	TRUB1	84	71.837	ENSATEG00000023291	trub1	88	71.837	Anabas_testudineus
ENSPSIG00000012877	TRUB1	95	82.609	ENSAPLG00000006808	TRUB1	99	82.609	Anas_platyrhynchos
ENSPSIG00000012877	TRUB1	93	75.836	ENSACAG00000009282	TRUB1	97	75.836	Anolis_carolinensis
ENSPSIG00000012877	TRUB1	93	77.206	ENSANAG00000022870	TRUB1	77	77.206	Aotus_nancymaae
ENSPSIG00000012877	TRUB1	86	70.400	ENSACLG00000000823	trub1	90	70.400	Astatotilapia_calliptera
ENSPSIG00000012877	TRUB1	83	69.959	ENSAMXG00000015845	trub1	81	69.959	Astyanax_mexicanus
ENSPSIG00000012877	TRUB1	93	77.206	ENSBTAG00000012955	TRUB1	77	77.206	Bos_taurus
ENSPSIG00000012877	TRUB1	93	77.206	ENSCJAG00000047815	TRUB1	77	77.206	Callithrix_jacchus
ENSPSIG00000012877	TRUB1	93	77.574	ENSCAFG00000011688	TRUB1	78	77.574	Canis_familiaris
ENSPSIG00000012877	TRUB1	93	77.574	ENSCAFG00020013237	TRUB1	78	77.574	Canis_lupus_dingo
ENSPSIG00000012877	TRUB1	93	77.574	ENSCHIG00000020884	TRUB1	81	77.574	Capra_hircus
ENSPSIG00000012877	TRUB1	93	76.471	ENSTSYG00000000446	TRUB1	77	76.471	Carlito_syrichta
ENSPSIG00000012877	TRUB1	79	69.298	ENSCAPG00000017088	TRUB1	89	69.298	Cavia_aperea
ENSPSIG00000012877	TRUB1	63	76.087	ENSCPOG00000040236	-	75	76.087	Cavia_porcellus
ENSPSIG00000012877	TRUB1	64	75.401	ENSCPOG00000030129	-	73	75.401	Cavia_porcellus
ENSPSIG00000012877	TRUB1	93	77.206	ENSCCAG00000028842	TRUB1	77	77.206	Cebus_capucinus
ENSPSIG00000012877	TRUB1	93	76.838	ENSCATG00000033431	TRUB1	78	76.838	Cercocebus_atys
ENSPSIG00000012877	TRUB1	63	75.543	ENSCLAG00000008664	TRUB1	75	75.543	Chinchilla_lanigera
ENSPSIG00000012877	TRUB1	93	77.206	ENSCSAG00000004891	TRUB1	78	77.206	Chlorocebus_sabaeus
ENSPSIG00000012877	TRUB1	93	67.279	ENSCHOG00000011931	TRUB1	78	67.279	Choloepus_hoffmanni
ENSPSIG00000012877	TRUB1	100	90.000	ENSCPBG00000003051	TRUB1	100	90.000	Chrysemys_picta_bellii
ENSPSIG00000012877	TRUB1	93	77.206	ENSCANG00000029445	TRUB1	78	77.206	Colobus_angolensis_palliatus
ENSPSIG00000012877	TRUB1	79	75.000	ENSCGRG00001016772	-	80	72.500	Cricetulus_griseus_chok1gshd
ENSPSIG00000012877	TRUB1	91	66.288	ENSCGRG00001010322	-	73	66.544	Cricetulus_griseus_chok1gshd
ENSPSIG00000012877	TRUB1	91	73.106	ENSCGRG00000010806	Trub1	83	73.529	Cricetulus_griseus_crigri
ENSPSIG00000012877	TRUB1	84	67.073	ENSCSEG00000011261	trub1	80	67.073	Cynoglossus_semilaevis
ENSPSIG00000012877	TRUB1	86	70.281	ENSCVAG00000008791	trub1	76	70.281	Cyprinodon_variegatus
ENSPSIG00000012877	TRUB1	94	64.706	ENSDARG00000053805	trub1	94	64.706	Danio_rerio
ENSPSIG00000012877	TRUB1	93	75.735	ENSDNOG00000001069	TRUB1	78	75.735	Dasypus_novemcinctus
ENSPSIG00000012877	TRUB1	91	75.379	ENSDORG00000010431	Trub1	79	75.735	Dipodomys_ordii
ENSPSIG00000012877	TRUB1	71	73.188	ENSETEG00000009183	TRUB1	58	73.188	Echinops_telfairi
ENSPSIG00000012877	TRUB1	93	76.838	ENSEASG00005014739	TRUB1	78	76.838	Equus_asinus_asinus
ENSPSIG00000012877	TRUB1	93	76.838	ENSECAG00000007177	TRUB1	78	76.838	Equus_caballus
ENSPSIG00000012877	TRUB1	93	67.279	ENSEEUG00000013993	TRUB1	76	67.279	Erinaceus_europaeus
ENSPSIG00000012877	TRUB1	86	69.600	ENSELUG00000000502	trub1	87	69.600	Esox_lucius
ENSPSIG00000012877	TRUB1	93	77.941	ENSFCAG00000031927	TRUB1	78	77.941	Felis_catus
ENSPSIG00000012877	TRUB1	83	81.405	ENSFALG00000002232	TRUB1	93	81.405	Ficedula_albicollis
ENSPSIG00000012877	TRUB1	63	77.174	ENSFDAG00000008140	TRUB1	75	77.174	Fukomys_damarensis
ENSPSIG00000012877	TRUB1	84	69.796	ENSFHEG00000004016	trub1	84	69.796	Fundulus_heteroclitus
ENSPSIG00000012877	TRUB1	98	79.225	ENSGALG00000009091	TRUB1	99	79.225	Gallus_gallus
ENSPSIG00000012877	TRUB1	88	66.537	ENSGAFG00000009193	trub1	89	66.537	Gambusia_affinis
ENSPSIG00000012877	TRUB1	66	71.354	ENSGACG00000015387	trub1	94	71.354	Gasterosteus_aculeatus
ENSPSIG00000012877	TRUB1	100	90.345	ENSGAGG00000009758	TRUB1	81	89.437	Gopherus_agassizii
ENSPSIG00000012877	TRUB1	93	77.574	ENSGGOG00000004583	TRUB1	78	77.574	Gorilla_gorilla
ENSPSIG00000012877	TRUB1	86	70.400	ENSHBUG00000016787	trub1	90	70.400	Haplochromis_burtoni
ENSPSIG00000012877	TRUB1	94	72.993	ENSHGLG00000015314	TRUB1	79	72.993	Heterocephalus_glaber_female
ENSPSIG00000012877	TRUB1	63	76.087	ENSHGLG00100009183	TRUB1	78	76.087	Heterocephalus_glaber_male
ENSPSIG00000012877	TRUB1	84	71.545	ENSHCOG00000017877	trub1	89	71.545	Hippocampus_comes
ENSPSIG00000012877	TRUB1	92	65.918	ENSIPUG00000017559	trub1	94	65.918	Ictalurus_punctatus
ENSPSIG00000012877	TRUB1	95	75.451	ENSSTOG00000003641	TRUB1	83	75.451	Ictidomys_tridecemlineatus
ENSPSIG00000012877	TRUB1	93	75.277	ENSJJAG00000011800	Trub1	80	75.277	Jaculus_jaculus
ENSPSIG00000012877	TRUB1	84	69.919	ENSKMAG00000006232	trub1	88	69.919	Kryptolebias_marmoratus
ENSPSIG00000012877	TRUB1	87	67.181	ENSLBEG00000026722	trub1	91	67.181	Labrus_bergylta
ENSPSIG00000012877	TRUB1	95	75.627	ENSLACG00000014885	TRUB1	94	75.627	Latimeria_chalumnae
ENSPSIG00000012877	TRUB1	94	72.059	ENSLOCG00000012979	trub1	93	72.059	Lepisosteus_oculatus
ENSPSIG00000012877	TRUB1	88	76.172	ENSLAFG00000015452	TRUB1	80	72.760	Loxodonta_africana
ENSPSIG00000012877	TRUB1	93	77.206	ENSMFAG00000031767	TRUB1	78	77.206	Macaca_fascicularis
ENSPSIG00000012877	TRUB1	93	77.206	ENSMMUG00000001902	TRUB1	78	77.206	Macaca_mulatta
ENSPSIG00000012877	TRUB1	93	72.426	ENSMNEG00000044646	TRUB1	77	72.426	Macaca_nemestrina
ENSPSIG00000012877	TRUB1	93	77.206	ENSMLEG00000042655	TRUB1	78	77.206	Mandrillus_leucophaeus
ENSPSIG00000012877	TRUB1	86	70.400	ENSMZEG00005024095	trub1	90	70.400	Maylandia_zebra
ENSPSIG00000012877	TRUB1	97	78.014	ENSMGAG00000011135	TRUB1	96	78.014	Meleagris_gallopavo
ENSPSIG00000012877	TRUB1	91	70.455	ENSMAUG00000011101	Trub1	83	68.905	Mesocricetus_auratus
ENSPSIG00000012877	TRUB1	93	77.574	ENSMICG00000016324	TRUB1	78	77.574	Microcebus_murinus
ENSPSIG00000012877	TRUB1	91	73.485	ENSMOCG00000017759	Trub1	82	73.897	Microtus_ochrogaster
ENSPSIG00000012877	TRUB1	93	81.618	ENSMODG00000009676	TRUB1	76	81.522	Monodelphis_domestica
ENSPSIG00000012877	TRUB1	92	73.034	MGP_CAROLIEiJ_G0023100	Trub1	86	70.588	Mus_caroli
ENSPSIG00000012877	TRUB1	92	72.285	ENSMUSG00000025086	Trub1	86	69.896	Mus_musculus
ENSPSIG00000012877	TRUB1	93	73.063	MGP_PahariEiJ_G0014588	Trub1	86	70.242	Mus_pahari
ENSPSIG00000012877	TRUB1	92	72.285	MGP_SPRETEiJ_G0024021	Trub1	86	69.896	Mus_spretus
ENSPSIG00000012877	TRUB1	93	77.574	ENSMPUG00000003556	TRUB1	78	77.574	Mustela_putorius_furo
ENSPSIG00000012877	TRUB1	93	76.838	ENSMLUG00000017686	TRUB1	80	76.838	Myotis_lucifugus
ENSPSIG00000012877	TRUB1	93	75.000	ENSNGAG00000018682	Trub1	78	75.000	Nannospalax_galili
ENSPSIG00000012877	TRUB1	86	71.084	ENSNBRG00000023393	trub1	89	71.084	Neolamprologus_brichardi
ENSPSIG00000012877	TRUB1	93	77.574	ENSNLEG00000016345	TRUB1	78	77.574	Nomascus_leucogenys
ENSPSIG00000012877	TRUB1	69	83.582	ENSMEUG00000006603	TRUB1	76	83.010	Notamacropus_eugenii
ENSPSIG00000012877	TRUB1	93	73.162	ENSOPRG00000009371	TRUB1	79	73.162	Ochotona_princeps
ENSPSIG00000012877	TRUB1	95	72.662	ENSODEG00000010854	TRUB1	80	72.662	Octodon_degus
ENSPSIG00000012877	TRUB1	86	70.000	ENSONIG00000007249	trub1	91	70.000	Oreochromis_niloticus
ENSPSIG00000012877	TRUB1	95	77.536	ENSOANG00000001556	TRUB1	92	76.950	Ornithorhynchus_anatinus
ENSPSIG00000012877	TRUB1	93	75.277	ENSOCUG00000009456	TRUB1	79	75.000	Oryctolagus_cuniculus
ENSPSIG00000012877	TRUB1	83	71.901	ENSORLG00000029719	trub1	88	71.138	Oryzias_latipes
ENSPSIG00000012877	TRUB1	83	71.488	ENSORLG00020016767	trub1	87	70.732	Oryzias_latipes_hni
ENSPSIG00000012877	TRUB1	83	71.488	ENSORLG00015014728	trub1	88	70.732	Oryzias_latipes_hsok
ENSPSIG00000012877	TRUB1	84	70.325	ENSOMEG00000014556	trub1	86	70.325	Oryzias_melastigma
ENSPSIG00000012877	TRUB1	93	76.838	ENSOGAG00000015895	TRUB1	78	76.838	Otolemur_garnettii
ENSPSIG00000012877	TRUB1	93	74.552	ENSOARG00000015591	TRUB1	79	74.552	Ovis_aries
ENSPSIG00000012877	TRUB1	93	77.574	ENSPPAG00000043645	TRUB1	78	77.574	Pan_paniscus
ENSPSIG00000012877	TRUB1	93	77.206	ENSPPRG00000007096	TRUB1	78	77.206	Panthera_pardus
ENSPSIG00000012877	TRUB1	93	77.574	ENSPTIG00000006378	TRUB1	78	77.574	Panthera_tigris_altaica
ENSPSIG00000012877	TRUB1	93	77.574	ENSPTRG00000002964	TRUB1	78	77.574	Pan_troglodytes
ENSPSIG00000012877	TRUB1	93	77.206	ENSPANG00000020712	TRUB1	78	77.206	Papio_anubis
ENSPSIG00000012877	TRUB1	61	70.455	ENSPKIG00000003852	trub1	76	70.455	Paramormyrops_kingsleyae
ENSPSIG00000012877	TRUB1	94	62.409	ENSPMGG00000000075	trub1	96	62.409	Periophthalmus_magnuspinnatus
ENSPSIG00000012877	TRUB1	93	75.000	ENSPEMG00000011156	Trub1	80	75.000	Peromyscus_maniculatus_bairdii
ENSPSIG00000012877	TRUB1	93	81.250	ENSPCIG00000009729	TRUB1	76	80.645	Phascolarctos_cinereus
ENSPSIG00000012877	TRUB1	84	69.512	ENSPFOG00000009950	trub1	90	69.512	Poecilia_formosa
ENSPSIG00000012877	TRUB1	90	67.816	ENSPLAG00000013855	trub1	91	67.816	Poecilia_latipinna
ENSPSIG00000012877	TRUB1	90	67.816	ENSPMEG00000009064	trub1	93	67.816	Poecilia_mexicana
ENSPSIG00000012877	TRUB1	90	67.816	ENSPREG00000003343	trub1	93	67.816	Poecilia_reticulata
ENSPSIG00000012877	TRUB1	93	77.206	ENSPPYG00000002676	TRUB1	78	77.206	Pongo_abelii
ENSPSIG00000012877	TRUB1	93	67.279	ENSPCAG00000008427	TRUB1	77	67.279	Procavia_capensis
ENSPSIG00000012877	TRUB1	93	72.426	ENSPCOG00000024360	TRUB1	77	72.426	Propithecus_coquereli
ENSPSIG00000012877	TRUB1	70	80.296	ENSPVAG00000007575	TRUB1	77	80.296	Pteropus_vampyrus
ENSPSIG00000012877	TRUB1	86	70.400	ENSPNYG00000018614	trub1	90	70.400	Pundamilia_nyererei
ENSPSIG00000012877	TRUB1	83	62.917	ENSPNAG00000006881	trub1	77	62.917	Pygocentrus_nattereri
ENSPSIG00000012877	TRUB1	97	70.567	ENSRNOG00000017321	Trub1	83	70.567	Rattus_norvegicus
ENSPSIG00000012877	TRUB1	93	68.750	ENSRBIG00000033423	TRUB1	76	68.750	Rhinopithecus_bieti
ENSPSIG00000012877	TRUB1	93	77.206	ENSRROG00000033902	TRUB1	78	77.206	Rhinopithecus_roxellana
ENSPSIG00000012877	TRUB1	93	77.206	ENSSBOG00000024237	TRUB1	77	77.206	Saimiri_boliviensis_boliviensis
ENSPSIG00000012877	TRUB1	81	81.780	ENSSHAG00000009346	TRUB1	79	81.780	Sarcophilus_harrisii
ENSPSIG00000012877	TRUB1	83	74.486	ENSSFOG00015022124	trub1	83	74.486	Scleropages_formosus
ENSPSIG00000012877	TRUB1	84	70.732	ENSSMAG00000001020	trub1	88	70.732	Scophthalmus_maximus
ENSPSIG00000012877	TRUB1	82	70.168	ENSSDUG00000016414	trub1	90	68.924	Seriola_dumerili
ENSPSIG00000012877	TRUB1	81	70.886	ENSSLDG00000015486	trub1	90	69.600	Seriola_lalandi_dorsalis
ENSPSIG00000012877	TRUB1	100	81.034	ENSSPUG00000001642	TRUB1	100	81.034	Sphenodon_punctatus
ENSPSIG00000012877	TRUB1	84	71.545	ENSSPAG00000001217	trub1	88	71.545	Stegastes_partitus
ENSPSIG00000012877	TRUB1	94	77.007	ENSSSCG00000010653	TRUB1	78	78.571	Sus_scrofa
ENSPSIG00000012877	TRUB1	93	81.784	ENSTGUG00000010971	TRUB1	97	81.618	Taeniopygia_guttata
ENSPSIG00000012877	TRUB1	79	64.035	ENSTBEG00000002880	TRUB1	90	64.035	Tupaia_belangeri
ENSPSIG00000012877	TRUB1	70	78.818	ENSTTRG00000005767	TRUB1	77	78.818	Tursiops_truncatus
ENSPSIG00000012877	TRUB1	93	77.574	ENSUAMG00000024876	TRUB1	78	77.574	Ursus_americanus
ENSPSIG00000012877	TRUB1	93	77.574	ENSUMAG00000002411	TRUB1	81	77.574	Ursus_maritimus
ENSPSIG00000012877	TRUB1	93	78.676	ENSVPAG00000005507	TRUB1	78	78.676	Vicugna_pacos
ENSPSIG00000012877	TRUB1	93	77.574	ENSVVUG00000010085	TRUB1	66	77.574	Vulpes_vulpes
ENSPSIG00000012877	TRUB1	93	67.897	ENSXETG00000023828	trub1	98	67.897	Xenopus_tropicalis
ENSPSIG00000012877	TRUB1	83	69.295	ENSXCOG00000017847	trub1	85	69.295	Xiphophorus_couchianus
ENSPSIG00000012877	TRUB1	90	67.050	ENSXMAG00000014701	trub1	93	67.050	Xiphophorus_maculatus