EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000012928 (Gene tree)
Gene ID: 102455911
Gene Symbol: -
Alias: -
Full Name: calreticulin
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 5187 bases
Position: chrJH205553.1:488365-493551
Accession: 102455911
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000014509	Calreticulin	PF00262.18	1.5e-78	1	2
ENSPSIP00000014509	Calreticulin	PF00262.18	1.5e-78	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000014577	-	1180	XM_006111880	ENSPSIP00000014509	392 (aa)	-	K7G2J8

Gene Model

Click here to download ENSPSIG00000012928's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss04141	Protein processing in endoplasmic reticulum	KEGG
pss04145	Phagosome	KEGG
pss05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000012928's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000012928	-	74	38.506	ENSPSIG00000009344	-	54	38.728
ENSPSIG00000012928	-	85	66.867	ENSPSIG00000013549	CALR3	85	66.867
ENSPSIG00000012928	-	75	39.542	ENSPSIG00000003895	-	60	39.542

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000012928	-	89	83.429	ENSAMXG00000018577	-	78	83.582	Astyanax_mexicanus
ENSPSIG00000012928	-	85	85.970	ENSCAFG00000017093	CALR	82	85.970	Canis_familiaris
ENSPSIG00000012928	-	100	95.663	ENSCPBG00000023916	-	100	95.467	Chrysemys_picta_bellii
ENSPSIG00000012928	-	85	80.240	ENSDARG00000103979	calr3a	79	80.000	Danio_rerio
ENSPSIG00000012928	-	88	71.758	FBgn0005585	Calr	81	71.557	Drosophila_melanogaster
ENSPSIG00000012928	-	73	36.023	FBgn0264077	Cnx14D	53	36.023	Drosophila_melanogaster
ENSPSIG00000012928	-	90	73.164	ENSEBUG00000008568	calr3a	77	74.627	Eptatretus_burgeri
ENSPSIG00000012928	-	80	78.205	ENSELUG00000008294	-	80	78.710	Esox_lucius
ENSPSIG00000012928	-	81	81.132	ENSFHEG00000000123	-	71	82.060	Fundulus_heteroclitus
ENSPSIG00000012928	-	100	75.682	ENSMAMG00000003716	-	88	78.796	Mastacembelus_armatus
ENSPSIG00000012928	-	85	81.845	ENSMMOG00000020031	-	76	81.602	Mola_mola
ENSPSIG00000012928	-	85	87.164	ENSMLUG00000012776	-	80	87.164	Myotis_lucifugus
ENSPSIG00000012928	-	85	71.257	ENSORLG00000017171	-	76	71.343	Oryzias_latipes
ENSPSIG00000012928	-	85	82.335	ENSOMEG00000010424	-	78	82.388	Oryzias_melastigma
ENSPSIG00000012928	-	85	83.533	ENSPNAG00000016813	-	79	83.284	Pygocentrus_nattereri
ENSPSIG00000012928	-	90	76.705	ENSSMAG00000005047	calr3a	76	77.888	Scophthalmus_maximus
ENSPSIG00000012928	-	74	40.000	ENSSLDG00000020527	-	61	40.286	Seriola_lalandi_dorsalis
ENSPSIG00000012928	-	85	84.431	ENSTRUG00000004597	-	77	84.179	Takifugu_rubripes
ENSPSIG00000012928	-	85	86.567	ENSXETG00000007937	calr	80	86.567	Xenopus_tropicalis