EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000013289 (Gene tree)
Gene ID: 102453767
Gene Symbol: PABPC1L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 10279 bases
Position: chrJH211368.1:3707737-3718015
Accession: 102453767
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000014840	RRM_5	PF13893.6	1.6e-08	1	1
ENSPSIP00000014840	RRM_1	PF00076.22	9.4e-89	1	4
ENSPSIP00000014840	RRM_1	PF00076.22	9.4e-89	2	4
ENSPSIP00000014840	RRM_1	PF00076.22	9.4e-89	3	4
ENSPSIP00000014840	RRM_1	PF00076.22	9.4e-89	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000014911	PABPC1L-201	2156	XM_006132257	ENSPSIP00000014840	422 (aa)	-	K7G3H9

Gene Model

Click here to download ENSPSIG00000013289's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03013	RNA transport	KEGG
pss03015	mRNA surveillance pathway	KEGG
pss03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000013289's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000013289	PABPC1L	86	36.774	ENSPSIG00000009565	SF3B4	65	34.615
ENSPSIG00000013289	PABPC1L	89	33.735	ENSPSIG00000015330	ELAVL2	100	33.735
ENSPSIG00000013289	PABPC1L	55	35.526	ENSPSIG00000007110	-	97	35.526
ENSPSIG00000013289	PABPC1L	98	81.446	ENSPSIG00000016892	PABPC4	66	81.446
ENSPSIG00000013289	PABPC1L	86	30.120	ENSPSIG00000013567	TIA1	73	30.120
ENSPSIG00000013289	PABPC1L	78	34.211	ENSPSIG00000013861	CELF2	64	34.211
ENSPSIG00000013289	PABPC1L	99	80.907	ENSPSIG00000003719	PABPC1	65	81.401
ENSPSIG00000013289	PABPC1L	78	35.526	ENSPSIG00000003922	CELF1	63	35.526
ENSPSIG00000013289	PABPC1L	75	38.554	ENSPSIG00000005317	CELF5	71	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000013289	PABPC1L	99	83.453	ENSG00000101104	PABPC1L	98	82.407	Homo_sapiens
ENSPSIG00000013289	PABPC1L	99	77.938	ENSAPOG00000010842	pabpc1l	68	77.938	Acanthochromis_polyacanthus
ENSPSIG00000013289	PABPC1L	99	84.524	ENSAMEG00000004099	PABPC1L	66	84.524	Ailuropoda_melanoleuca
ENSPSIG00000013289	PABPC1L	99	80.622	ENSACIG00000021004	-	76	80.990	Amphilophus_citrinellus
ENSPSIG00000013289	PABPC1L	99	78.417	ENSAOCG00000006167	-	66	78.417	Amphiprion_ocellaris
ENSPSIG00000013289	PABPC1L	99	78.417	ENSAPEG00000010558	-	98	83.099	Amphiprion_percula
ENSPSIG00000013289	PABPC1L	99	81.295	ENSATEG00000007428	pabpc1l	68	81.295	Anabas_testudineus
ENSPSIG00000013289	PABPC1L	97	93.137	ENSAPLG00000008415	PABPC1L	66	92.308	Anas_platyrhynchos
ENSPSIG00000013289	PABPC1L	99	91.449	ENSACAG00000011841	PABPC1L	66	91.449	Anolis_carolinensis
ENSPSIG00000013289	PABPC1L	99	82.254	ENSANAG00000026826	PABPC1L	68	82.254	Aotus_nancymaae
ENSPSIG00000013289	PABPC1L	99	81.295	ENSACLG00000024791	pabpc1l	66	81.295	Astatotilapia_calliptera
ENSPSIG00000013289	PABPC1L	98	85.714	ENSAMXG00000013552	pabpc1l	66	85.714	Astyanax_mexicanus
ENSPSIG00000013289	PABPC1L	91	94.048	ENSBTAG00000055300	-	100	94.048	Bos_taurus
ENSPSIG00000013289	PABPC1L	91	73.810	ENSBTAG00000016849	PABPC1L	77	73.810	Bos_taurus
ENSPSIG00000013289	PABPC1L	86	80.460	ENSCJAG00000038506	-	100	80.460	Callithrix_jacchus
ENSPSIG00000013289	PABPC1L	99	82.734	ENSCJAG00000017628	PABPC1L	68	82.734	Callithrix_jacchus
ENSPSIG00000013289	PABPC1L	99	84.286	ENSCAFG00000009573	PABPC1L	65	84.286	Canis_familiaris
ENSPSIG00000013289	PABPC1L	99	84.652	ENSCAFG00020013828	PABPC1L	68	84.652	Canis_lupus_dingo
ENSPSIG00000013289	PABPC1L	99	84.892	ENSCHIG00000025759	PABPC1L	64	84.892	Capra_hircus
ENSPSIG00000013289	PABPC1L	99	83.213	ENSTSYG00000006645	PABPC1L	68	83.213	Carlito_syrichta
ENSPSIG00000013289	PABPC1L	96	76.232	ENSCAPG00000014519	PABPC1L	63	76.232	Cavia_aperea
ENSPSIG00000013289	PABPC1L	99	78.998	ENSCPOG00000013633	PABPC1L	68	78.998	Cavia_porcellus
ENSPSIG00000013289	PABPC1L	99	78.636	ENSCCAG00000023338	PABPC1L	68	82.892	Cebus_capucinus
ENSPSIG00000013289	PABPC1L	99	83.693	ENSCATG00000034065	PABPC1L	68	83.693	Cercocebus_atys
ENSPSIG00000013289	PABPC1L	97	79.902	ENSCLAG00000005298	PABPC1L	67	79.376	Chinchilla_lanigera
ENSPSIG00000013289	PABPC1L	99	83.453	ENSCSAG00000014242	PABPC1L	68	83.453	Chlorocebus_sabaeus
ENSPSIG00000013289	PABPC1L	99	97.122	ENSCPBG00000017755	-	94	97.122	Chrysemys_picta_bellii
ENSPSIG00000013289	PABPC1L	78	82.836	ENSCPBG00000007810	-	83	82.836	Chrysemys_picta_bellii
ENSPSIG00000013289	PABPC1L	94	60.377	ENSCING00000002796	-	53	60.377	Ciona_intestinalis
ENSPSIG00000013289	PABPC1L	97	68.370	ENSCSAVG00000004246	-	71	68.317	Ciona_savignyi
ENSPSIG00000013289	PABPC1L	82	83.221	ENSCSAVG00000003102	-	100	83.221	Ciona_savignyi
ENSPSIG00000013289	PABPC1L	99	83.693	ENSCANG00000037530	PABPC1L	68	83.693	Colobus_angolensis_palliatus
ENSPSIG00000013289	PABPC1L	98	76.271	ENSCGRG00001021938	Pabpc1l	67	76.271	Cricetulus_griseus_chok1gshd
ENSPSIG00000013289	PABPC1L	98	76.271	ENSCGRG00000007946	Pabpc1l	67	76.271	Cricetulus_griseus_crigri
ENSPSIG00000013289	PABPC1L	99	79.426	ENSCSEG00000021295	pabpc1l	75	79.426	Cynoglossus_semilaevis
ENSPSIG00000013289	PABPC1L	99	81.055	ENSCVAG00000015943	-	86	90.076	Cyprinodon_variegatus
ENSPSIG00000013289	PABPC1L	98	82.609	ENSDARG00000002597	pabpc1l	88	90.769	Danio_rerio
ENSPSIG00000013289	PABPC1L	99	85.132	ENSDNOG00000048450	PABPC1L	68	85.132	Dasypus_novemcinctus
ENSPSIG00000013289	PABPC1L	99	80.815	ENSDORG00000001067	Pabpc1l	68	80.815	Dipodomys_ordii
ENSPSIG00000013289	PABPC1L	91	92.857	ENSEASG00005023408	-	100	92.857	Equus_asinus_asinus
ENSPSIG00000013289	PABPC1L	76	83.030	ENSEASG00005023407	-	67	83.030	Equus_asinus_asinus
ENSPSIG00000013289	PABPC1L	90	81.818	ENSECAG00000040139	-	71	81.818	Equus_caballus
ENSPSIG00000013289	PABPC1L	99	81.818	ENSEEUG00000005978	PABPC1L	68	81.818	Erinaceus_europaeus
ENSPSIG00000013289	PABPC1L	99	82.775	ENSELUG00000001811	pabpc1l	75	82.775	Esox_lucius
ENSPSIG00000013289	PABPC1L	99	84.652	ENSFCAG00000011692	PABPC1L	68	84.652	Felis_catus
ENSPSIG00000013289	PABPC1L	98	93.705	ENSFALG00000005372	PABPC1L	70	93.705	Ficedula_albicollis
ENSPSIG00000013289	PABPC1L	99	79.856	ENSFDAG00000008291	PABPC1L	70	79.856	Fukomys_damarensis
ENSPSIG00000013289	PABPC1L	99	81.295	ENSFHEG00000003398	pabpc1l	73	76.009	Fundulus_heteroclitus
ENSPSIG00000013289	PABPC1L	99	81.055	ENSGMOG00000004437	pabpc1l	67	81.055	Gadus_morhua
ENSPSIG00000013289	PABPC1L	99	93.587	ENSGALG00000004123	PABPC1L	99	93.587	Gallus_gallus
ENSPSIG00000013289	PABPC1L	99	76.169	ENSGAFG00000021057	pabpc1l	69	76.169	Gambusia_affinis
ENSPSIG00000013289	PABPC1L	99	81.535	ENSGACG00000002792	pabpc1l	67	81.535	Gasterosteus_aculeatus
ENSPSIG00000013289	PABPC1L	99	97.362	ENSGAGG00000000589	PABPC1L	75	98.063	Gopherus_agassizii
ENSPSIG00000013289	PABPC1L	99	83.453	ENSGGOG00000004584	PABPC1L	68	83.453	Gorilla_gorilla
ENSPSIG00000013289	PABPC1L	99	81.295	ENSHBUG00000006134	pabpc1l	73	81.598	Haplochromis_burtoni
ENSPSIG00000013289	PABPC1L	99	79.856	ENSHGLG00000008434	PABPC1L	68	79.856	Heterocephalus_glaber_female
ENSPSIG00000013289	PABPC1L	99	79.856	ENSHGLG00100012151	PABPC1L	68	79.856	Heterocephalus_glaber_male
ENSPSIG00000013289	PABPC1L	87	85.393	ENSHGLG00100019506	-	100	85.393	Heterocephalus_glaber_male
ENSPSIG00000013289	PABPC1L	99	80.529	ENSHCOG00000009270	pabpc1l	73	80.529	Hippocampus_comes
ENSPSIG00000013289	PABPC1L	64	60.769	ENSIPUG00000005537	-	100	60.769	Ictalurus_punctatus
ENSPSIG00000013289	PABPC1L	86	63.793	ENSIPUG00000006760	-	88	63.793	Ictalurus_punctatus
ENSPSIG00000013289	PABPC1L	87	64.368	ENSIPUG00000006780	-	85	64.368	Ictalurus_punctatus
ENSPSIG00000013289	PABPC1L	98	86.199	ENSIPUG00000012602	pabpc1l	71	86.199	Ictalurus_punctatus
ENSPSIG00000013289	PABPC1L	99	82.974	ENSSTOG00000003739	PABPC1L	68	82.974	Ictidomys_tridecemlineatus
ENSPSIG00000013289	PABPC1L	97	62.609	ENSJJAG00000022406	Pabpc1l	62	57.908	Jaculus_jaculus
ENSPSIG00000013289	PABPC1L	99	81.055	ENSKMAG00000016847	pabpc1l	73	81.055	Kryptolebias_marmoratus
ENSPSIG00000013289	PABPC1L	99	80.576	ENSLBEG00000010084	pabpc1l	69	80.576	Labrus_bergylta
ENSPSIG00000013289	PABPC1L	99	86.874	ENSLACG00000005762	PABPC1L	76	86.811	Latimeria_chalumnae
ENSPSIG00000013289	PABPC1L	98	87.167	ENSLOCG00000007519	pabpc1l	65	87.167	Lepisosteus_oculatus
ENSPSIG00000013289	PABPC1L	99	84.173	ENSLAFG00000003553	PABPC1L	67	84.173	Loxodonta_africana
ENSPSIG00000013289	PABPC1L	99	83.693	ENSMFAG00000040365	PABPC1L	68	83.693	Macaca_fascicularis
ENSPSIG00000013289	PABPC1L	99	83.693	ENSMNEG00000032298	PABPC1L	68	83.693	Macaca_nemestrina
ENSPSIG00000013289	PABPC1L	99	83.693	ENSMLEG00000043139	PABPC1L	68	83.693	Mandrillus_leucophaeus
ENSPSIG00000013289	PABPC1L	99	80.576	ENSMAMG00000011854	pabpc1l	67	80.576	Mastacembelus_armatus
ENSPSIG00000013289	PABPC1L	99	81.295	ENSMZEG00005023713	pabpc1l	66	81.295	Maylandia_zebra
ENSPSIG00000013289	PABPC1L	98	94.712	ENSMGAG00000003674	PABPC1L	66	94.712	Meleagris_gallopavo
ENSPSIG00000013289	PABPC1L	98	76.513	ENSMOCG00000013186	Pabpc1l	67	76.513	Microtus_ochrogaster
ENSPSIG00000013289	PABPC1L	99	81.535	ENSMMOG00000020574	-	90	90.769	Mola_mola
ENSPSIG00000013289	PABPC1L	98	87.409	ENSMODG00000016198	PABPC1L	70	87.409	Monodelphis_domestica
ENSPSIG00000013289	PABPC1L	99	80.096	ENSMALG00000021622	pabpc1l	69	80.096	Monopterus_albus
ENSPSIG00000013289	PABPC1L	98	76.271	MGP_CAROLIEiJ_G0024627	Pabpc1l	67	76.271	Mus_caroli
ENSPSIG00000013289	PABPC1L	98	76.271	ENSMUSG00000054582	Pabpc1l	67	76.271	Mus_musculus
ENSPSIG00000013289	PABPC1L	98	76.271	MGP_PahariEiJ_G0026071	Pabpc1l	67	76.271	Mus_pahari
ENSPSIG00000013289	PABPC1L	98	76.271	MGP_SPRETEiJ_G0025549	Pabpc1l	67	76.271	Mus_spretus
ENSPSIG00000013289	PABPC1L	99	85.372	ENSMPUG00000017646	PABPC1L	67	85.372	Mustela_putorius_furo
ENSPSIG00000013289	PABPC1L	99	79.810	ENSMLUG00000006324	PABPC1L	66	79.810	Myotis_lucifugus
ENSPSIG00000013289	PABPC1L	99	76.499	ENSNGAG00000010458	Pabpc1l	67	76.499	Nannospalax_galili
ENSPSIG00000013289	PABPC1L	99	81.295	ENSNBRG00000016633	pabpc1l	77	81.299	Neolamprologus_brichardi
ENSPSIG00000013289	PABPC1L	99	83.693	ENSMEUG00000007905	-	68	83.693	Notamacropus_eugenii
ENSPSIG00000013289	PABPC1L	99	82.734	ENSOPRG00000011846	PABPC1L	68	82.734	Ochotona_princeps
ENSPSIG00000013289	PABPC1L	98	79.903	ENSODEG00000015482	PABPC1L	76	79.903	Octodon_degus
ENSPSIG00000013289	PABPC1L	84	78.750	ENSODEG00000002920	-	97	78.750	Octodon_degus
ENSPSIG00000013289	PABPC1L	99	81.055	ENSONIG00000017314	pabpc1l	66	81.055	Oreochromis_niloticus
ENSPSIG00000013289	PABPC1L	99	74.286	ENSOANG00000015793	-	75	74.286	Ornithorhynchus_anatinus
ENSPSIG00000013289	PABPC1L	91	85.455	ENSOCUG00000003005	PABPC1L	60	85.455	Oryctolagus_cuniculus
ENSPSIG00000013289	PABPC1L	99	80.336	ENSORLG00000010322	pabpc1l	83	76.699	Oryzias_latipes
ENSPSIG00000013289	PABPC1L	99	80.336	ENSORLG00020021193	pabpc1l	83	76.699	Oryzias_latipes_hni
ENSPSIG00000013289	PABPC1L	99	80.336	ENSORLG00015017018	pabpc1l	83	76.699	Oryzias_latipes_hsok
ENSPSIG00000013289	PABPC1L	99	75.785	ENSOMEG00000010789	pabpc1l	68	75.785	Oryzias_melastigma
ENSPSIG00000013289	PABPC1L	98	83.133	ENSOGAG00000032999	PABPC1L	67	83.133	Otolemur_garnettii
ENSPSIG00000013289	PABPC1L	99	84.652	ENSOARG00000004578	PABPC1L	68	84.652	Ovis_aries
ENSPSIG00000013289	PABPC1L	99	83.693	ENSPPAG00000039677	PABPC1L	68	83.693	Pan_paniscus
ENSPSIG00000013289	PABPC1L	91	73.457	ENSPPRG00000019327	-	98	73.457	Panthera_pardus
ENSPSIG00000013289	PABPC1L	97	84.428	ENSPTIG00000006524	PABPC1L	68	84.428	Panthera_tigris_altaica
ENSPSIG00000013289	PABPC1L	91	82.716	ENSPTRG00000013531	PABPC1L	98	82.716	Pan_troglodytes
ENSPSIG00000013289	PABPC1L	99	83.693	ENSPANG00000018788	PABPC1L	68	83.693	Papio_anubis
ENSPSIG00000013289	PABPC1L	98	83.777	ENSPKIG00000007322	pabpc1l	72	78.281	Paramormyrops_kingsleyae
ENSPSIG00000013289	PABPC1L	77	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSPSIG00000013289	PABPC1L	91	88.636	ENSPMGG00000023117	pabpc1l	97	84.186	Periophthalmus_magnuspinnatus
ENSPSIG00000013289	PABPC1L	97	76.471	ENSPMGG00000023121	-	80	76.471	Periophthalmus_magnuspinnatus
ENSPSIG00000013289	PABPC1L	98	76.513	ENSPEMG00000020671	Pabpc1l	67	76.513	Peromyscus_maniculatus_bairdii
ENSPSIG00000013289	PABPC1L	99	81.535	ENSPFOG00000013241	pabpc1l	67	81.535	Poecilia_formosa
ENSPSIG00000013289	PABPC1L	99	81.535	ENSPLAG00000017490	-	74	81.535	Poecilia_latipinna
ENSPSIG00000013289	PABPC1L	77	91.538	ENSPLAG00000023686	-	92	91.538	Poecilia_latipinna
ENSPSIG00000013289	PABPC1L	99	81.535	ENSPMEG00000007677	pabpc1l	67	81.535	Poecilia_mexicana
ENSPSIG00000013289	PABPC1L	77	91.538	ENSPMEG00000009185	-	88	91.538	Poecilia_mexicana
ENSPSIG00000013289	PABPC1L	98	81.840	ENSPREG00000015886	pabpc1l	99	81.840	Poecilia_reticulata
ENSPSIG00000013289	PABPC1L	99	83.453	ENSPPYG00000011042	PABPC1L	68	83.453	Pongo_abelii
ENSPSIG00000013289	PABPC1L	90	93.750	ENSPCAG00000011787	-	75	93.750	Procavia_capensis
ENSPSIG00000013289	PABPC1L	99	82.254	ENSPCOG00000020630	PABPC1L	68	82.254	Propithecus_coquereli
ENSPSIG00000013289	PABPC1L	99	82.014	ENSPVAG00000012663	PABPC1L	68	82.014	Pteropus_vampyrus
ENSPSIG00000013289	PABPC1L	99	81.295	ENSPNYG00000004101	pabpc1l	77	81.299	Pundamilia_nyererei
ENSPSIG00000013289	PABPC1L	98	76.513	ENSPNAG00000021248	pabpc1l	64	76.513	Pygocentrus_nattereri
ENSPSIG00000013289	PABPC1L	99	75.779	ENSRNOG00000012750	Pabpc1l	68	75.779	Rattus_norvegicus
ENSPSIG00000013289	PABPC1L	99	83.453	ENSRBIG00000035381	PABPC1L	68	83.453	Rhinopithecus_bieti
ENSPSIG00000013289	PABPC1L	99	83.213	ENSRROG00000044498	PABPC1L	68	83.213	Rhinopithecus_roxellana
ENSPSIG00000013289	PABPC1L	99	82.254	ENSSBOG00000009532	-	68	82.254	Saimiri_boliviensis_boliviensis
ENSPSIG00000013289	PABPC1L	97	80.277	ENSSHAG00000011446	PABPC1L	59	80.277	Sarcophilus_harrisii
ENSPSIG00000013289	PABPC1L	98	86.683	ENSSFOG00015017304	pabpc1l	66	86.683	Scleropages_formosus
ENSPSIG00000013289	PABPC1L	99	81.055	ENSSMAG00000010516	pabpc1l	98	87.500	Scophthalmus_maximus
ENSPSIG00000013289	PABPC1L	99	81.535	ENSSDUG00000014743	pabpc1l	67	81.535	Seriola_dumerili
ENSPSIG00000013289	PABPC1L	98	88.038	ENSSLDG00000006981	pabpc1l	98	88.038	Seriola_lalandi_dorsalis
ENSPSIG00000013289	PABPC1L	99	93.525	ENSSPUG00000004233	PABPC1L	66	93.525	Sphenodon_punctatus
ENSPSIG00000013289	PABPC1L	99	77.938	ENSSPAG00000017137	pabpc1l	75	77.938	Stegastes_partitus
ENSPSIG00000013289	PABPC1L	99	84.726	ENSSSCG00000007382	PABPC1L	69	84.726	Sus_scrofa
ENSPSIG00000013289	PABPC1L	99	91.142	ENSTGUG00000005114	PABPC1L	68	91.142	Taeniopygia_guttata
ENSPSIG00000013289	PABPC1L	98	80.630	ENSTRUG00000011085	pabpc1l	67	80.630	Takifugu_rubripes
ENSPSIG00000013289	PABPC1L	99	77.751	ENSTNIG00000017903	pabpc1l	66	77.751	Tetraodon_nigroviridis
ENSPSIG00000013289	PABPC1L	99	82.578	ENSTTRG00000007618	PABPC1L	71	82.578	Tursiops_truncatus
ENSPSIG00000013289	PABPC1L	99	84.652	ENSUAMG00000017682	PABPC1L	71	84.652	Ursus_americanus
ENSPSIG00000013289	PABPC1L	98	81.492	ENSUMAG00000025436	PABPC1L	93	81.492	Ursus_maritimus
ENSPSIG00000013289	PABPC1L	99	84.652	ENSVVUG00000018939	PABPC1L	69	84.652	Vulpes_vulpes
ENSPSIG00000013289	PABPC1L	99	83.933	ENSXETG00000022831	pabpc1l	66	83.933	Xenopus_tropicalis
ENSPSIG00000013289	PABPC1L	99	82.014	ENSXCOG00000005459	pabpc1l	99	86.525	Xiphophorus_couchianus
ENSPSIG00000013289	PABPC1L	99	82.014	ENSXMAG00000017135	pabpc1l	74	82.014	Xiphophorus_maculatus