EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000014006 (Gene tree)
Gene ID: 102448760
Gene Symbol: POLR2A
Alias: -
Full Name: DNA-directed RNA polymerase II subunit RPB1-like
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 27132 bases
Position: chrJH205571.1:924426-951557
Accession: 102448760
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000015889	RNA_pol_Rpb1_5	PF04998.17	3.8e-91	1	1
ENSPSIP00000015889	RNA_pol_Rpb1_4	PF05000.17	1.9e-38	1	1
ENSPSIP00000015889	RNA_pol_Rpb1_2	PF00623.20	2.1e-70	1	1
ENSPSIP00000015889	RNA_pol_Rpb1_3	PF04983.18	1.8e-50	1	1
ENSPSIP00000015889	RNA_pol_Rpb1_1	PF04997.12	1.2e-104	1	1
ENSPSIP00000015889	RNA_pol_Rpb1_7	PF04990.12	7.9e-55	1	1
ENSPSIP00000015889	RNA_pol_Rpb1_6	PF04992.14	1e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000015964	POLR2A-201	6075	XM_006112139	ENSPSIP00000015889	1634 (aa)	XP_006112201	K7G6H8

Gene Model

Click here to download ENSPSIG00000014006's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000014006's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000014006	POLR2A	79	38.265	ENSPSIG00000002092	POLR3A	92	38.265

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000014006	POLR2A	98	92.751	ENSAPOG00000006552	polr2a	91	92.831	Acanthochromis_polyacanthus
ENSPSIG00000014006	POLR2A	100	96.182	ENSAMEG00000016265	-	98	96.182	Ailuropoda_melanoleuca
ENSPSIG00000014006	POLR2A	100	90.685	ENSACIG00000015982	polr2a	98	90.826	Amphilophus_citrinellus
ENSPSIG00000014006	POLR2A	98	92.875	ENSAOCG00000004255	polr2a	98	90.826	Amphiprion_ocellaris
ENSPSIG00000014006	POLR2A	100	92.875	ENSAPEG00000012623	polr2a	98	92.953	Amphiprion_percula
ENSPSIG00000014006	POLR2A	100	92.689	ENSATEG00000019644	polr2a	98	92.770	Anabas_testudineus
ENSPSIG00000014006	POLR2A	100	97.145	ENSACAG00000014561	POLR2A	98	97.145	Anolis_carolinensis
ENSPSIG00000014006	POLR2A	100	96.478	ENSANAG00000020093	-	98	96.478	Aotus_nancymaae
ENSPSIG00000014006	POLR2A	100	92.441	ENSACLG00000006735	polr2a	98	92.527	Astatotilapia_calliptera
ENSPSIG00000014006	POLR2A	100	92.937	ENSAMXG00000020046	polr2a	98	93.013	Astyanax_mexicanus
ENSPSIG00000014006	POLR2A	100	96.478	ENSBTAG00000046765	POLR2A	98	96.478	Bos_taurus
ENSPSIG00000014006	POLR2A	99	68.689	WBGene00000123	ama-1	97	68.690	Caenorhabditis_elegans
ENSPSIG00000014006	POLR2A	100	96.478	ENSCAFG00000016532	POLR2A	99	96.478	Canis_familiaris
ENSPSIG00000014006	POLR2A	100	95.449	ENSCAFG00020007929	-	98	95.449	Canis_lupus_dingo
ENSPSIG00000014006	POLR2A	100	96.478	ENSCHIG00000027173	-	98	96.478	Capra_hircus
ENSPSIG00000014006	POLR2A	100	95.742	ENSTSYG00000012803	-	98	94.293	Carlito_syrichta
ENSPSIG00000014006	POLR2A	98	94.840	ENSCAPG00000001882	-	98	94.840	Cavia_aperea
ENSPSIG00000014006	POLR2A	100	94.813	ENSCPOG00000014812	-	98	94.813	Cavia_porcellus
ENSPSIG00000014006	POLR2A	100	96.478	ENSCCAG00000020938	-	98	96.478	Cebus_capucinus
ENSPSIG00000014006	POLR2A	100	96.478	ENSCATG00000013680	-	98	96.478	Cercocebus_atys
ENSPSIG00000014006	POLR2A	100	96.296	ENSCLAG00000012196	-	98	96.296	Chinchilla_lanigera
ENSPSIG00000014006	POLR2A	100	87.307	ENSCSAG00000011644	-	98	87.568	Chlorocebus_sabaeus
ENSPSIG00000014006	POLR2A	100	95.018	ENSCPBG00000012697	POLR2A	98	95.018	Chrysemys_picta_bellii
ENSPSIG00000014006	POLR2A	99	74.454	ENSCING00000007884	-	99	74.834	Ciona_intestinalis
ENSPSIG00000014006	POLR2A	99	74.617	ENSCSAVG00000008334	-	99	75.333	Ciona_savignyi
ENSPSIG00000014006	POLR2A	100	95.689	ENSCANG00000010622	-	98	95.689	Colobus_angolensis_palliatus
ENSPSIG00000014006	POLR2A	100	90.859	ENSCGRG00001003538	Polr2a	98	90.854	Cricetulus_griseus_chok1gshd
ENSPSIG00000014006	POLR2A	98	92.770	ENSCGRG00000012105	Polr2a	98	92.019	Cricetulus_griseus_crigri
ENSPSIG00000014006	POLR2A	100	91.884	ENSCSEG00000002635	polr2a	98	91.981	Cynoglossus_semilaevis
ENSPSIG00000014006	POLR2A	100	92.751	ENSCVAG00000005156	polr2a	98	92.831	Cyprinodon_variegatus
ENSPSIG00000014006	POLR2A	100	92.384	ENSDARG00000099966	polr2a	98	92.471	Danio_rerio
ENSPSIG00000014006	POLR2A	100	93.313	ENSDNOG00000016482	-	98	93.313	Dasypus_novemcinctus
ENSPSIG00000014006	POLR2A	100	96.478	ENSDORG00000008667	Polr2a	98	96.478	Dipodomys_ordii
ENSPSIG00000014006	POLR2A	99	72.589	FBgn0003277	RpII215	91	72.405	Drosophila_melanogaster
ENSPSIG00000014006	POLR2A	93	93.250	ENSETEG00000002540	-	81	93.250	Echinops_telfairi
ENSPSIG00000014006	POLR2A	99	86.248	ENSEBUG00000013967	polr2a	98	85.775	Eptatretus_burgeri
ENSPSIG00000014006	POLR2A	100	94.296	ENSEASG00005019114	-	96	94.414	Equus_asinus_asinus
ENSPSIG00000014006	POLR2A	100	96.418	ENSECAG00000018485	POLR2A	98	96.418	Equus_caballus
ENSPSIG00000014006	POLR2A	91	96.197	ENSEEUG00000001154	-	91	96.197	Erinaceus_europaeus
ENSPSIG00000014006	POLR2A	99	89.163	ENSELUG00000014284	polr2a	85	89.312	Esox_lucius
ENSPSIG00000014006	POLR2A	100	96.539	ENSFDAG00000008287	-	98	96.539	Fukomys_damarensis
ENSPSIG00000014006	POLR2A	100	92.813	ENSFHEG00000001768	polr2a	99	92.892	Fundulus_heteroclitus
ENSPSIG00000014006	POLR2A	99	88.842	ENSGMOG00000007725	polr2a	100	87.189	Gadus_morhua
ENSPSIG00000014006	POLR2A	100	92.689	ENSGAFG00000005389	polr2a	94	92.770	Gambusia_affinis
ENSPSIG00000014006	POLR2A	99	89.130	ENSGACG00000019366	polr2a	100	87.122	Gasterosteus_aculeatus
ENSPSIG00000014006	POLR2A	100	94.306	ENSGGOG00000014800	-	98	94.306	Gorilla_gorilla
ENSPSIG00000014006	POLR2A	100	92.441	ENSHBUG00000018937	polr2a	98	92.527	Haplochromis_burtoni
ENSPSIG00000014006	POLR2A	100	96.539	ENSHGLG00000012381	POLR2A	98	96.539	Heterocephalus_glaber_female
ENSPSIG00000014006	POLR2A	100	96.539	ENSHGLG00100014843	POLR2A	98	96.539	Heterocephalus_glaber_male
ENSPSIG00000014006	POLR2A	100	92.317	ENSHCOG00000011874	polr2a	98	92.406	Hippocampus_comes
ENSPSIG00000014006	POLR2A	100	92.503	ENSIPUG00000002613	Polr2a	98	92.588	Ictalurus_punctatus
ENSPSIG00000014006	POLR2A	100	96.478	ENSSTOG00000001304	-	98	96.478	Ictidomys_tridecemlineatus
ENSPSIG00000014006	POLR2A	100	96.478	ENSJJAG00000013049	Polr2a	98	96.478	Jaculus_jaculus
ENSPSIG00000014006	POLR2A	96	73.894	ENSKMAG00000016343	polr2a	85	73.894	Kryptolebias_marmoratus
ENSPSIG00000014006	POLR2A	100	92.565	ENSLBEG00000027652	polr2a	98	92.649	Labrus_bergylta
ENSPSIG00000014006	POLR2A	98	86.760	ENSLACG00000012071	POLR2A	96	87.095	Latimeria_chalumnae
ENSPSIG00000014006	POLR2A	100	93.208	ENSLOCG00000013863	polr2a	98	92.953	Lepisosteus_oculatus
ENSPSIG00000014006	POLR2A	100	96.418	ENSLAFG00000008626	-	98	96.418	Loxodonta_africana
ENSPSIG00000014006	POLR2A	60	95.209	ENSMFAG00000007042	-	99	95.209	Macaca_fascicularis
ENSPSIG00000014006	POLR2A	100	96.478	ENSMMUG00000023620	-	98	96.478	Macaca_mulatta
ENSPSIG00000014006	POLR2A	100	96.053	ENSMNEG00000040407	-	98	96.053	Macaca_nemestrina
ENSPSIG00000014006	POLR2A	98	91.846	ENSMLEG00000030263	-	99	95.209	Mandrillus_leucophaeus
ENSPSIG00000014006	POLR2A	100	92.627	ENSMAMG00000003351	polr2a	98	92.710	Mastacembelus_armatus
ENSPSIG00000014006	POLR2A	100	92.441	ENSMZEG00005021429	polr2a	98	92.527	Maylandia_zebra
ENSPSIG00000014006	POLR2A	60	96.945	ENSMAUG00000021055	-	99	96.945	Mesocricetus_auratus
ENSPSIG00000014006	POLR2A	100	96.418	ENSMICG00000013372	-	98	96.418	Microcebus_murinus
ENSPSIG00000014006	POLR2A	100	91.764	ENSMOCG00000018279	Polr2a	94	91.889	Microtus_ochrogaster
ENSPSIG00000014006	POLR2A	99	92.255	ENSMMOG00000012515	polr2a	95	92.345	Mola_mola
ENSPSIG00000014006	POLR2A	100	96.661	ENSMODG00000007009	-	98	96.661	Monodelphis_domestica
ENSPSIG00000014006	POLR2A	99	92.641	ENSMALG00000008716	polr2a	95	92.019	Monopterus_albus
ENSPSIG00000014006	POLR2A	100	96.478	MGP_CAROLIEiJ_G0016587	Polr2a	98	96.478	Mus_caroli
ENSPSIG00000014006	POLR2A	100	96.478	ENSMUSG00000005198	Polr2a	98	96.478	Mus_musculus
ENSPSIG00000014006	POLR2A	100	94.317	MGP_PahariEiJ_G0017718	Polr2a	98	94.317	Mus_pahari
ENSPSIG00000014006	POLR2A	100	96.478	MGP_SPRETEiJ_G0017423	Polr2a	98	96.478	Mus_spretus
ENSPSIG00000014006	POLR2A	100	96.418	ENSMPUG00000009648	-	98	96.418	Mustela_putorius_furo
ENSPSIG00000014006	POLR2A	100	95.876	ENSMLUG00000009088	-	98	95.876	Myotis_lucifugus
ENSPSIG00000014006	POLR2A	100	96.478	ENSNGAG00000002543	Polr2a	98	96.478	Nannospalax_galili
ENSPSIG00000014006	POLR2A	100	90.315	ENSNBRG00000002005	polr2a	98	90.462	Neolamprologus_brichardi
ENSPSIG00000014006	POLR2A	100	95.033	ENSNLEG00000009460	-	98	95.033	Nomascus_leucogenys
ENSPSIG00000014006	POLR2A	99	83.175	ENSMEUG00000008611	-	99	83.175	Notamacropus_eugenii
ENSPSIG00000014006	POLR2A	96	96.151	ENSOPRG00000015116	-	99	96.151	Ochotona_princeps
ENSPSIG00000014006	POLR2A	99	94.889	ENSODEG00000017674	-	98	91.386	Octodon_degus
ENSPSIG00000014006	POLR2A	100	92.627	ENSONIG00000009231	polr2a	98	92.710	Oreochromis_niloticus
ENSPSIG00000014006	POLR2A	57	96.253	ENSOANG00000003303	-	98	96.253	Ornithorhynchus_anatinus
ENSPSIG00000014006	POLR2A	100	96.117	ENSOCUG00000017929	-	96	95.261	Oryctolagus_cuniculus
ENSPSIG00000014006	POLR2A	100	92.565	ENSORLG00000006431	polr2a	98	92.649	Oryzias_latipes
ENSPSIG00000014006	POLR2A	100	92.565	ENSORLG00020010235	polr2a	98	92.649	Oryzias_latipes_hni
ENSPSIG00000014006	POLR2A	100	92.565	ENSORLG00015007075	polr2a	98	92.649	Oryzias_latipes_hsok
ENSPSIG00000014006	POLR2A	100	92.671	ENSOMEG00000010713	polr2a	100	92.671	Oryzias_melastigma
ENSPSIG00000014006	POLR2A	100	96.478	ENSOGAG00000033608	-	98	96.478	Otolemur_garnettii
ENSPSIG00000014006	POLR2A	100	96.478	ENSOARG00000013874	-	99	96.478	Ovis_aries
ENSPSIG00000014006	POLR2A	100	93.934	ENSPPAG00000043734	-	98	93.685	Pan_paniscus
ENSPSIG00000014006	POLR2A	100	95.033	ENSPTRG00000008691	POLR2A	98	95.033	Pan_troglodytes
ENSPSIG00000014006	POLR2A	100	95.689	ENSPANG00000024099	-	98	95.689	Papio_anubis
ENSPSIG00000014006	POLR2A	93	91.697	ENSPKIG00000005727	polr2a	84	82.880	Paramormyrops_kingsleyae
ENSPSIG00000014006	POLR2A	100	92.284	ENSPMGG00000019734	polr2a	99	91.920	Periophthalmus_magnuspinnatus
ENSPSIG00000014006	POLR2A	100	96.478	ENSPEMG00000012521	Polr2a	98	96.478	Peromyscus_maniculatus_bairdii
ENSPSIG00000014006	POLR2A	98	96.592	ENSPCIG00000028851	-	82	96.592	Phascolarctos_cinereus
ENSPSIG00000014006	POLR2A	100	92.689	ENSPFOG00000007890	polr2a	98	92.770	Poecilia_formosa
ENSPSIG00000014006	POLR2A	100	92.689	ENSPLAG00000007399	polr2a	98	92.770	Poecilia_latipinna
ENSPSIG00000014006	POLR2A	100	92.689	ENSPMEG00000002071	polr2a	98	92.770	Poecilia_mexicana
ENSPSIG00000014006	POLR2A	100	92.627	ENSPREG00000013122	polr2a	98	92.710	Poecilia_reticulata
ENSPSIG00000014006	POLR2A	100	96.478	ENSPPYG00000007924	-	98	96.478	Pongo_abelii
ENSPSIG00000014006	POLR2A	90	96.457	ENSPCAG00000006951	-	90	96.457	Procavia_capensis
ENSPSIG00000014006	POLR2A	100	95.126	ENSPCOG00000025260	-	98	95.126	Propithecus_coquereli
ENSPSIG00000014006	POLR2A	100	96.175	ENSPVAG00000005069	-	98	96.175	Pteropus_vampyrus
ENSPSIG00000014006	POLR2A	100	92.503	ENSPNYG00000022340	polr2a	98	92.588	Pundamilia_nyererei
ENSPSIG00000014006	POLR2A	100	92.813	ENSPNAG00000011237	polr2a	98	92.892	Pygocentrus_nattereri
ENSPSIG00000014006	POLR2A	100	96.478	ENSRNOG00000028834	Polr2a	98	96.478	Rattus_norvegicus
ENSPSIG00000014006	POLR2A	100	96.114	ENSRBIG00000002471	-	97	94.293	Rhinopithecus_bieti
ENSPSIG00000014006	POLR2A	100	96.478	ENSRROG00000029583	-	98	96.478	Rhinopithecus_roxellana
ENSPSIG00000014006	POLR2A	99	84.000	YDL140C	RPO21	99	49.970	Saccharomyces_cerevisiae
ENSPSIG00000014006	POLR2A	100	96.478	ENSSBOG00000000808	-	98	96.478	Saimiri_boliviensis_boliviensis
ENSPSIG00000014006	POLR2A	100	96.661	ENSSHAG00000002858	-	98	96.661	Sarcophilus_harrisii
ENSPSIG00000014006	POLR2A	100	92.751	ENSSFOG00015023275	polr2a	98	92.831	Scleropages_formosus
ENSPSIG00000014006	POLR2A	100	92.255	ENSSMAG00000009137	polr2a	98	92.345	Scophthalmus_maximus
ENSPSIG00000014006	POLR2A	100	92.751	ENSSDUG00000020466	polr2a	98	92.831	Seriola_dumerili
ENSPSIG00000014006	POLR2A	100	92.751	ENSSLDG00000020613	polr2a	98	92.831	Seriola_lalandi_dorsalis
ENSPSIG00000014006	POLR2A	100	92.840	ENSSARG00000005875	-	98	92.840	Sorex_araneus
ENSPSIG00000014006	POLR2A	100	92.875	ENSSPAG00000016741	polr2a	92	92.953	Stegastes_partitus
ENSPSIG00000014006	POLR2A	100	95.568	ENSSSCG00000028278	-	98	95.568	Sus_scrofa
ENSPSIG00000014006	POLR2A	98	87.113	ENSTRUG00000012320	polr2a	81	86.027	Takifugu_rubripes
ENSPSIG00000014006	POLR2A	100	91.326	ENSTNIG00000010136	polr2a	100	91.373	Tetraodon_nigroviridis
ENSPSIG00000014006	POLR2A	70	96.648	ENSTBEG00000013294	-	53	96.648	Tupaia_belangeri
ENSPSIG00000014006	POLR2A	100	94.606	ENSTTRG00000014273	-	98	94.718	Tursiops_truncatus
ENSPSIG00000014006	POLR2A	100	96.124	ENSUAMG00000014866	-	99	93.414	Ursus_americanus
ENSPSIG00000014006	POLR2A	90	96.648	ENSUMAG00000015732	-	96	96.648	Ursus_maritimus
ENSPSIG00000014006	POLR2A	59	95.349	ENSVPAG00000008842	-	71	95.349	Vicugna_pacos
ENSPSIG00000014006	POLR2A	100	96.478	ENSVVUG00000027878	-	98	96.478	Vulpes_vulpes
ENSPSIG00000014006	POLR2A	99	95.508	ENSXETG00000012465	polr2a	98	95.508	Xenopus_tropicalis
ENSPSIG00000014006	POLR2A	100	88.545	ENSXCOG00000001804	polr2a	99	90.583	Xiphophorus_couchianus
ENSPSIG00000014006	POLR2A	100	92.689	ENSXMAG00000015687	polr2a	98	92.770	Xiphophorus_maculatus