EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000014804 (Gene tree)
Gene ID: 102459670
Gene Symbol: PARN
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 191732 bases
Position: chrJH211946.1:375190-566921
Accession: 102459670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000016986	RNA_bind	PF08675.11	1.5e-33	1	1
ENSPSIP00000016976	RNA_bind	PF08675.11	1.7e-33	1	1
ENSPSIP00000016976	CAF1	PF04857.20	5.8e-89	1	1
ENSPSIP00000016986	CAF1	PF04857.20	9.4e-70	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000017054	PARN-201	1923	-	ENSPSIP00000016976	640 (aa)	-	K7G9L5
ENSPSIT00000017064	PARN-202	3821	XM_006134131	ENSPSIP00000016986	577 (aa)	XP_006134193	K7G9M5

Gene Model

Click here to download ENSPSIG00000014804's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000014804's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000014804	PARN	100	83.737	ENSG00000140694	PARN	98	89.831	Homo_sapiens
ENSPSIG00000014804	PARN	100	83.391	ENSAMEG00000011208	PARN	97	84.430	Ailuropoda_melanoleuca
ENSPSIG00000014804	PARN	88	73.684	ENSACIG00000000619	parn	87	73.684	Amphilophus_citrinellus
ENSPSIG00000014804	PARN	90	75.043	ENSAOCG00000003465	parn	82	75.043	Amphiprion_ocellaris
ENSPSIG00000014804	PARN	84	77.207	ENSAPEG00000010661	parn	92	77.207	Amphiprion_percula
ENSPSIG00000014804	PARN	91	75.043	ENSATEG00000004661	parn	83	75.043	Anabas_testudineus
ENSPSIG00000014804	PARN	100	87.695	ENSAPLG00000013914	PARN	97	88.331	Anas_platyrhynchos
ENSPSIG00000014804	PARN	100	78.209	ENSACAG00000004973	PARN	92	84.757	Anolis_carolinensis
ENSPSIG00000014804	PARN	100	82.526	ENSANAG00000031516	PARN	98	89.831	Aotus_nancymaae
ENSPSIG00000014804	PARN	91	74.872	ENSACLG00000004742	parn	84	74.872	Astatotilapia_calliptera
ENSPSIG00000014804	PARN	100	66.010	ENSAMXG00000012390	parn	93	73.057	Astyanax_mexicanus
ENSPSIG00000014804	PARN	100	84.055	ENSBTAG00000018097	PARN	100	84.055	Bos_taurus
ENSPSIG00000014804	PARN	100	82.872	ENSCJAG00000015866	PARN	98	89.831	Callithrix_jacchus
ENSPSIG00000014804	PARN	100	82.241	ENSCAFG00000018795	PARN	97	83.520	Canis_familiaris
ENSPSIG00000014804	PARN	55	30.056	ENSCAFG00020017742	PNLDC1	97	30.056	Canis_lupus_dingo
ENSPSIG00000014804	PARN	100	82.069	ENSCAFG00020024126	PARN	97	83.520	Canis_lupus_dingo
ENSPSIG00000014804	PARN	100	83.882	ENSCHIG00000018143	PARN	99	83.835	Capra_hircus
ENSPSIG00000014804	PARN	73	59.667	ENSCAPG00000007984	PARN	78	59.667	Cavia_aperea
ENSPSIG00000014804	PARN	100	80.936	ENSCPOG00000002263	PARN	95	83.471	Cavia_porcellus
ENSPSIG00000014804	PARN	100	82.872	ENSCCAG00000030367	PARN	98	89.831	Cebus_capucinus
ENSPSIG00000014804	PARN	83	90.207	ENSCATG00000041368	PARN	95	90.207	Cercocebus_atys
ENSPSIG00000014804	PARN	52	37.931	ENSCATG00000033196	PNLDC1	70	37.931	Cercocebus_atys
ENSPSIG00000014804	PARN	100	82.322	ENSCLAG00000015406	PARN	95	84.628	Chinchilla_lanigera
ENSPSIG00000014804	PARN	100	83.391	ENSCSAG00000008142	PARN	99	83.810	Chlorocebus_sabaeus
ENSPSIG00000014804	PARN	100	66.031	ENSCHOG00000007014	PARN	97	68.130	Choloepus_hoffmanni
ENSPSIG00000014804	PARN	97	96.078	ENSCPBG00000006609	PARN	97	96.097	Chrysemys_picta_bellii
ENSPSIG00000014804	PARN	80	43.045	ENSCING00000010142	-	99	43.045	Ciona_intestinalis
ENSPSIG00000014804	PARN	100	71.380	ENSCANG00000028849	-	98	89.831	Colobus_angolensis_palliatus
ENSPSIG00000014804	PARN	74	30.533	ENSCGRG00001007470	-	86	30.328	Cricetulus_griseus_chok1gshd
ENSPSIG00000014804	PARN	100	78.720	ENSCGRG00001012096	Parn	95	81.518	Cricetulus_griseus_chok1gshd
ENSPSIG00000014804	PARN	100	78.720	ENSCGRG00000004939	Parn	95	81.518	Cricetulus_griseus_crigri
ENSPSIG00000014804	PARN	74	30.533	ENSCGRG00000010221	-	86	30.328	Cricetulus_griseus_crigri
ENSPSIG00000014804	PARN	91	71.039	ENSCSEG00000002064	parn	100	63.801	Cynoglossus_semilaevis
ENSPSIG00000014804	PARN	90	72.945	ENSCVAG00000014848	parn	82	72.945	Cyprinodon_variegatus
ENSPSIG00000014804	PARN	90	70.761	ENSDARG00000102634	parn	100	63.889	Danio_rerio
ENSPSIG00000014804	PARN	100	83.709	ENSDNOG00000000833	PARN	98	88.669	Dasypus_novemcinctus
ENSPSIG00000014804	PARN	65	87.072	ENSETEG00000014828	-	69	87.072	Echinops_telfairi
ENSPSIG00000014804	PARN	100	82.669	ENSEASG00005011400	PARN	99	82.884	Equus_asinus_asinus
ENSPSIG00000014804	PARN	100	82.496	ENSECAG00000017792	PARN	99	82.567	Equus_caballus
ENSPSIG00000014804	PARN	84	75.566	ENSEEUG00000010370	PARN	84	75.566	Erinaceus_europaeus
ENSPSIG00000014804	PARN	90	74.957	ENSELUG00000013139	parn	75	74.957	Esox_lucius
ENSPSIG00000014804	PARN	100	83.793	ENSFCAG00000044961	PARN	97	88.136	Felis_catus
ENSPSIG00000014804	PARN	100	87.002	ENSFALG00000003911	PARN	95	88.455	Ficedula_albicollis
ENSPSIG00000014804	PARN	58	30.890	ENSFALG00000012081	PNLDC1	70	30.890	Ficedula_albicollis
ENSPSIG00000014804	PARN	100	81.282	ENSFDAG00000009234	PARN	97	82.637	Fukomys_damarensis
ENSPSIG00000014804	PARN	91	68.205	ENSFHEG00000013738	parn	92	79.661	Fundulus_heteroclitus
ENSPSIG00000014804	PARN	83	76.493	ENSGMOG00000003231	parn	97	76.493	Gadus_morhua
ENSPSIG00000014804	PARN	100	86.135	ENSGALG00000003091	PARN	97	87.299	Gallus_gallus
ENSPSIG00000014804	PARN	90	73.379	ENSGAFG00000011061	parn	83	73.096	Gambusia_affinis
ENSPSIG00000014804	PARN	100	66.496	ENSGACG00000019501	parn	87	75.455	Gasterosteus_aculeatus
ENSPSIG00000014804	PARN	59	90.087	ENSGAGG00000023281	PARN	88	88.728	Gopherus_agassizii
ENSPSIG00000014804	PARN	95	85.785	ENSGGOG00000025224	PARN	100	89.831	Gorilla_gorilla
ENSPSIG00000014804	PARN	91	74.872	ENSHBUG00000017906	parn	94	74.690	Haplochromis_burtoni
ENSPSIG00000014804	PARN	100	80.763	ENSHGLG00000010886	PARN	97	82.154	Heterocephalus_glaber_female
ENSPSIG00000014804	PARN	100	80.763	ENSHGLG00100014659	PARN	97	82.154	Heterocephalus_glaber_male
ENSPSIG00000014804	PARN	87	70.035	ENSHCOG00000008683	parn	97	70.035	Hippocampus_comes
ENSPSIG00000014804	PARN	100	55.941	ENSIPUG00000012401	parn	85	63.903	Ictalurus_punctatus
ENSPSIG00000014804	PARN	100	81.456	ENSSTOG00000007519	PARN	97	82.958	Ictidomys_tridecemlineatus
ENSPSIG00000014804	PARN	100	78.856	ENSJJAG00000023049	Parn	95	81.488	Jaculus_jaculus
ENSPSIG00000014804	PARN	100	65.105	ENSKMAG00000009462	parn	91	65.267	Kryptolebias_marmoratus
ENSPSIG00000014804	PARN	91	72.821	ENSLBEG00000009167	parn	89	72.821	Labrus_bergylta
ENSPSIG00000014804	PARN	77	81.879	ENSLACG00000004207	PARN	100	78.066	Latimeria_chalumnae
ENSPSIG00000014804	PARN	94	76.000	ENSLOCG00000000715	parn	87	76.000	Lepisosteus_oculatus
ENSPSIG00000014804	PARN	100	83.189	ENSLAFG00000015036	PARN	97	84.084	Loxodonta_africana
ENSPSIG00000014804	PARN	53	31.124	ENSLAFG00000030189	PNLDC1	99	30.435	Loxodonta_africana
ENSPSIG00000014804	PARN	100	83.391	ENSMFAG00000044852	PARN	98	89.831	Macaca_fascicularis
ENSPSIG00000014804	PARN	100	83.564	ENSMMUG00000018849	PARN	98	89.831	Macaca_mulatta
ENSPSIG00000014804	PARN	100	83.391	ENSMNEG00000045108	PARN	98	89.831	Macaca_nemestrina
ENSPSIG00000014804	PARN	100	83.218	ENSMLEG00000031743	PARN	98	89.831	Mandrillus_leucophaeus
ENSPSIG00000014804	PARN	90	74.828	ENSMAMG00000006939	parn	82	74.828	Mastacembelus_armatus
ENSPSIG00000014804	PARN	91	74.872	ENSMZEG00005013590	parn	95	74.386	Maylandia_zebra
ENSPSIG00000014804	PARN	100	85.962	ENSMGAG00000001004	PARN	94	86.120	Meleagris_gallopavo
ENSPSIG00000014804	PARN	100	76.621	ENSMAUG00000008025	Parn	99	74.375	Mesocricetus_auratus
ENSPSIG00000014804	PARN	100	83.882	ENSMICG00000016053	PARN	98	88.136	Microcebus_murinus
ENSPSIG00000014804	PARN	77	86.842	ENSMOCG00000022211	Parn	100	86.842	Microtus_ochrogaster
ENSPSIG00000014804	PARN	87	73.192	ENSMMOG00000011333	parn	91	73.192	Mola_mola
ENSPSIG00000014804	PARN	77	91.935	ENSMODG00000004915	PARN	99	91.935	Monodelphis_domestica
ENSPSIG00000014804	PARN	89	73.988	ENSMALG00000019426	parn	95	75.795	Monopterus_albus
ENSPSIG00000014804	PARN	100	79.029	MGP_CAROLIEiJ_G0020466	Parn	95	81.488	Mus_caroli
ENSPSIG00000014804	PARN	51	32.229	ENSMUSG00000073460	Pnldc1	97	31.928	Mus_musculus
ENSPSIG00000014804	PARN	100	78.756	ENSMUSG00000022685	Parn	100	84.146	Mus_musculus
ENSPSIG00000014804	PARN	100	79.549	MGP_PahariEiJ_G0016172	Parn	95	81.384	Mus_pahari
ENSPSIG00000014804	PARN	100	78.756	MGP_SPRETEiJ_G0021361	Parn	95	81.219	Mus_spretus
ENSPSIG00000014804	PARN	100	83.793	ENSMPUG00000014464	PARN	97	84.960	Mustela_putorius_furo
ENSPSIG00000014804	PARN	77	89.676	ENSMLUG00000005414	PARN	100	89.676	Myotis_lucifugus
ENSPSIG00000014804	PARN	87	74.377	ENSNBRG00000006805	parn	95	74.377	Neolamprologus_brichardi
ENSPSIG00000014804	PARN	100	83.218	ENSNLEG00000010241	PARN	98	89.831	Nomascus_leucogenys
ENSPSIG00000014804	PARN	100	57.539	ENSMEUG00000008178	-	97	60.000	Notamacropus_eugenii
ENSPSIG00000014804	PARN	100	76.776	ENSOPRG00000012187	PARN	97	78.374	Ochotona_princeps
ENSPSIG00000014804	PARN	100	73.276	ENSODEG00000001617	PARN	94	75.822	Octodon_degus
ENSPSIG00000014804	PARN	100	68.197	ENSONIG00000000151	parn	83	78.664	Oreochromis_niloticus
ENSPSIG00000014804	PARN	66	83.896	ENSOANG00000020155	-	97	85.000	Ornithorhynchus_anatinus
ENSPSIG00000014804	PARN	100	82.842	ENSOCUG00000000322	PARN	98	83.280	Oryctolagus_cuniculus
ENSPSIG00000014804	PARN	93	71.000	ENSORLG00020010313	parn	93	67.661	Oryzias_latipes_hni
ENSPSIG00000014804	PARN	93	70.833	ENSORLG00015000300	parn	93	67.504	Oryzias_latipes_hsok
ENSPSIG00000014804	PARN	91	71.966	ENSOMEG00000019555	parn	97	64.253	Oryzias_melastigma
ENSPSIG00000014804	PARN	77	87.475	ENSOGAG00000014626	PARN	100	87.475	Otolemur_garnettii
ENSPSIG00000014804	PARN	77	90.891	ENSOARG00000007574	PARN	100	90.891	Ovis_aries
ENSPSIG00000014804	PARN	100	83.737	ENSPPAG00000031438	PARN	98	89.831	Pan_paniscus
ENSPSIG00000014804	PARN	100	83.621	ENSPPRG00000018583	PARN	97	88.136	Panthera_pardus
ENSPSIG00000014804	PARN	100	83.621	ENSPTIG00000012135	PARN	97	88.136	Panthera_tigris_altaica
ENSPSIG00000014804	PARN	100	83.391	ENSPTRG00000007792	PARN	98	89.831	Pan_troglodytes
ENSPSIG00000014804	PARN	100	80.450	ENSPANG00000020099	PARN	98	89.831	Papio_anubis
ENSPSIG00000014804	PARN	100	66.000	ENSPKIG00000022807	parn	92	70.202	Paramormyrops_kingsleyae
ENSPSIG00000014804	PARN	89	71.454	ENSPMGG00000014431	parn	79	72.329	Periophthalmus_magnuspinnatus
ENSPSIG00000014804	PARN	100	76.083	ENSPEMG00000018439	Parn	95	78.512	Peromyscus_maniculatus_bairdii
ENSPSIG00000014804	PARN	81	67.370	ENSPMAG00000003956	parn	99	67.370	Petromyzon_marinus
ENSPSIG00000014804	PARN	66	82.979	ENSPCIG00000001259	PARN	91	86.441	Phascolarctos_cinereus
ENSPSIG00000014804	PARN	90	73.630	ENSPFOG00000012823	parn	83	73.345	Poecilia_formosa
ENSPSIG00000014804	PARN	90	73.801	ENSPLAG00000006395	parn	83	73.514	Poecilia_latipinna
ENSPSIG00000014804	PARN	90	73.801	ENSPMEG00000007711	parn	83	73.514	Poecilia_mexicana
ENSPSIG00000014804	PARN	90	73.630	ENSPREG00000000147	parn	83	73.345	Poecilia_reticulata
ENSPSIG00000014804	PARN	100	83.391	ENSPPYG00000007123	PARN	99	83.386	Pongo_abelii
ENSPSIG00000014804	PARN	100	72.617	ENSPCAG00000001741	PARN	97	73.514	Procavia_capensis
ENSPSIG00000014804	PARN	100	80.763	ENSPCOG00000019292	PARN	98	88.136	Propithecus_coquereli
ENSPSIG00000014804	PARN	100	79.376	ENSPVAG00000002547	PARN	99	79.647	Pteropus_vampyrus
ENSPSIG00000014804	PARN	91	74.872	ENSPNYG00000006835	parn	95	71.454	Pundamilia_nyererei
ENSPSIG00000014804	PARN	90	72.587	ENSPNAG00000018905	parn	85	72.795	Pygocentrus_nattereri
ENSPSIG00000014804	PARN	100	76.975	ENSRNOG00000002912	Parn	98	82.828	Rattus_norvegicus
ENSPSIG00000014804	PARN	51	32.229	ENSRNOG00000023140	Pnldc1	89	31.928	Rattus_norvegicus
ENSPSIG00000014804	PARN	58	79.580	ENSRBIG00000018726	PARN	100	79.580	Rhinopithecus_bieti
ENSPSIG00000014804	PARN	58	79.580	ENSRROG00000011162	-	100	79.580	Rhinopithecus_roxellana
ENSPSIG00000014804	PARN	100	80.796	ENSSBOG00000034726	PARN	98	89.831	Saimiri_boliviensis_boliviensis
ENSPSIG00000014804	PARN	65	89.952	ENSSHAG00000008493	PARN	94	89.952	Sarcophilus_harrisii
ENSPSIG00000014804	PARN	62	30.918	ENSSHAG00000015192	PNLDC1	65	30.508	Sarcophilus_harrisii
ENSPSIG00000014804	PARN	98	72.568	ENSSFOG00015014165	parn	94	74.055	Scleropages_formosus
ENSPSIG00000014804	PARN	90	72.384	ENSSMAG00000000685	parn	91	69.284	Scophthalmus_maximus
ENSPSIG00000014804	PARN	90	74.188	ENSSDUG00000014555	parn	83	73.935	Seriola_dumerili
ENSPSIG00000014804	PARN	100	73.402	ENSSARG00000014339	PARN	99	73.402	Sorex_araneus
ENSPSIG00000014804	PARN	100	88.562	ENSSPUG00000007719	PARN	97	89.068	Sphenodon_punctatus
ENSPSIG00000014804	PARN	91	75.170	ENSSPAG00000007095	parn	90	72.389	Stegastes_partitus
ENSPSIG00000014804	PARN	100	83.276	ENSSSCG00000007878	PARN	87	84.160	Sus_scrofa
ENSPSIG00000014804	PARN	58	31.287	ENSTGUG00000011418	PNLDC1	68	30.641	Taeniopygia_guttata
ENSPSIG00000014804	PARN	100	86.828	ENSTGUG00000004971	PARN	97	88.169	Taeniopygia_guttata
ENSPSIG00000014804	PARN	100	67.692	ENSTNIG00000008252	parn	90	74.099	Tetraodon_nigroviridis
ENSPSIG00000014804	PARN	100	70.537	ENSTBEG00000010407	PARN	99	70.537	Tupaia_belangeri
ENSPSIG00000014804	PARN	100	78.510	ENSTTRG00000002843	PARN	99	78.846	Tursiops_truncatus
ENSPSIG00000014804	PARN	78	78.222	ENSUAMG00000008283	PARN	94	76.376	Ursus_americanus
ENSPSIG00000014804	PARN	100	83.448	ENSUMAG00000004527	PARN	97	84.640	Ursus_maritimus
ENSPSIG00000014804	PARN	97	80.714	ENSVPAG00000008968	PARN	100	81.433	Vicugna_pacos
ENSPSIG00000014804	PARN	100	82.931	ENSVVUG00000019509	PARN	97	84.320	Vulpes_vulpes
ENSPSIG00000014804	PARN	100	76.083	ENSXETG00000010994	parn	100	84.221	Xenopus_tropicalis
ENSPSIG00000014804	PARN	90	69.828	ENSXCOG00000015990	parn	96	69.573	Xiphophorus_couchianus
ENSPSIG00000014804	PARN	91	73.504	ENSXMAG00000014783	parn	83	73.504	Xiphophorus_maculatus