EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000015198 (Gene tree)
Gene ID: 102445536
Gene Symbol: SMG5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 43203 bases
Position: chrJH206249.1:2174819-2218021
Accession: 102445536
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000017169	EST1	PF10374.9	3.1e-24	1	1
ENSPSIP00000017155	EST1	PF10374.9	3.4e-24	1	1
ENSPSIP00000017169	EST1_DNA_bind	PF10373.9	3.2e-40	1	2
ENSPSIP00000017169	EST1_DNA_bind	PF10373.9	3.2e-40	2	2
ENSPSIP00000017155	EST1_DNA_bind	PF10373.9	4.1e-40	1	2
ENSPSIP00000017155	EST1_DNA_bind	PF10373.9	4.1e-40	2	2
ENSPSIP00000017155	PIN_4	PF13638.6	6.6e-07	1	1
ENSPSIP00000017169	PIN_4	PF13638.6	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000017247	SMG5-202	3022	-	ENSPSIP00000017169	1006 (aa)	-	K7GA58
ENSPSIT00000017233	SMG5-201	3198	XM_006113912	ENSPSIP00000017155	1065 (aa)	XP_006113974	K7GA44

Gene Model

Click here to download ENSPSIG00000015198's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000015198's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000015198	SMG5	100	80.674	ENSG00000198952	SMG5	98	81.132	Homo_sapiens
ENSPSIG00000015198	SMG5	100	67.262	ENSAPOG00000019690	smg5	98	67.818	Acanthochromis_polyacanthus
ENSPSIG00000015198	SMG5	100	77.877	ENSAMEG00000014458	SMG5	100	77.723	Ailuropoda_melanoleuca
ENSPSIG00000015198	SMG5	100	66.181	ENSACIG00000001353	smg5	98	66.861	Amphilophus_citrinellus
ENSPSIG00000015198	SMG5	99	65.714	ENSAOCG00000019483	smg5	96	66.108	Amphiprion_ocellaris
ENSPSIG00000015198	SMG5	100	66.765	ENSAPEG00000022949	smg5	98	67.060	Amphiprion_percula
ENSPSIG00000015198	SMG5	100	65.959	ENSATEG00000005348	smg5	98	67.773	Anabas_testudineus
ENSPSIG00000015198	SMG5	100	89.417	ENSAPLG00000010263	SMG5	100	91.237	Anas_platyrhynchos
ENSPSIG00000015198	SMG5	100	80.377	ENSANAG00000032899	SMG5	99	80.556	Aotus_nancymaae
ENSPSIG00000015198	SMG5	100	66.115	ENSACLG00000009311	smg5	98	67.343	Astatotilapia_calliptera
ENSPSIG00000015198	SMG5	99	43.984	ENSBTAG00000021747	-	97	43.886	Bos_taurus
ENSPSIG00000015198	SMG5	100	80.338	ENSBTAG00000009435	SMG5	98	80.238	Bos_taurus
ENSPSIG00000015198	SMG5	100	80.575	ENSCJAG00000005684	SMG5	98	80.773	Callithrix_jacchus
ENSPSIG00000015198	SMG5	100	79.187	ENSCAFG00000016839	SMG5	98	78.989	Canis_familiaris
ENSPSIG00000015198	SMG5	100	79.187	ENSCAFG00020006061	SMG5	98	78.989	Canis_lupus_dingo
ENSPSIG00000015198	SMG5	99	44.455	ENSCHIG00000006323	-	98	44.356	Capra_hircus
ENSPSIG00000015198	SMG5	100	80.139	ENSCHIG00000007709	SMG5	98	80.040	Capra_hircus
ENSPSIG00000015198	SMG5	100	79.980	ENSTSYG00000004099	SMG5	98	80.099	Carlito_syrichta
ENSPSIG00000015198	SMG5	97	60.123	ENSCAPG00000003631	SMG5	100	60.634	Cavia_aperea
ENSPSIG00000015198	SMG5	100	79.563	ENSCPOG00000015696	SMG5	98	80.020	Cavia_porcellus
ENSPSIG00000015198	SMG5	100	80.476	ENSCCAG00000027409	SMG5	99	80.655	Cebus_capucinus
ENSPSIG00000015198	SMG5	100	80.476	ENSCATG00000030539	SMG5	98	80.834	Cercocebus_atys
ENSPSIG00000015198	SMG5	100	79.663	ENSCLAG00000003983	SMG5	98	80.020	Chinchilla_lanigera
ENSPSIG00000015198	SMG5	100	80.476	ENSCSAG00000002120	SMG5	98	80.834	Chlorocebus_sabaeus
ENSPSIG00000015198	SMG5	55	85.199	ENSCHOG00000008741	-	57	85.199	Choloepus_hoffmanni
ENSPSIG00000015198	SMG5	96	94.534	ENSCPBG00000025848	SMG5	100	97.056	Chrysemys_picta_bellii
ENSPSIG00000015198	SMG5	94	33.954	ENSCING00000008706	-	97	34.058	Ciona_intestinalis
ENSPSIG00000015198	SMG5	100	76.710	ENSCANG00000029208	SMG5	98	76.961	Colobus_angolensis_palliatus
ENSPSIG00000015198	SMG5	100	79.365	ENSCGRG00001006336	Smg5	98	79.167	Cricetulus_griseus_chok1gshd
ENSPSIG00000015198	SMG5	100	79.365	ENSCGRG00000005111	Smg5	100	79.146	Cricetulus_griseus_crigri
ENSPSIG00000015198	SMG5	100	66.077	ENSCSEG00000014220	smg5	98	66.210	Cynoglossus_semilaevis
ENSPSIG00000015198	SMG5	100	60.686	ENSCVAG00000000529	smg5	97	60.669	Cyprinodon_variegatus
ENSPSIG00000015198	SMG5	52	60.490	ENSDARG00000041481	smg5	98	64.489	Danio_rerio
ENSPSIG00000015198	SMG5	95	35.380	ENSDNOG00000039862	-	100	35.759	Dasypus_novemcinctus
ENSPSIG00000015198	SMG5	100	76.167	ENSDNOG00000000051	SMG5	98	76.763	Dasypus_novemcinctus
ENSPSIG00000015198	SMG5	100	79.269	ENSDORG00000010382	Smg5	98	79.763	Dipodomys_ordii
ENSPSIG00000015198	SMG5	89	32.353	FBgn0019890	Smg5	63	32.353	Drosophila_melanogaster
ENSPSIG00000015198	SMG5	82	90.385	ENSETEG00000010336	SMG5	88	91.262	Echinops_telfairi
ENSPSIG00000015198	SMG5	93	46.114	ENSEBUG00000003739	smg5	98	47.524	Eptatretus_burgeri
ENSPSIG00000015198	SMG5	100	80.476	ENSEASG00005019122	SMG5	98	80.377	Equus_asinus_asinus
ENSPSIG00000015198	SMG5	100	80.377	ENSECAG00000001389	SMG5	98	80.278	Equus_caballus
ENSPSIG00000015198	SMG5	73	94.842	ENSEEUG00000012690	SMG5	75	95.389	Erinaceus_europaeus
ENSPSIG00000015198	SMG5	100	66.341	ENSELUG00000012585	smg5	98	66.113	Esox_lucius
ENSPSIG00000015198	SMG5	100	78.791	ENSFCAG00000011783	SMG5	98	78.593	Felis_catus
ENSPSIG00000015198	SMG5	61	89.853	ENSFALG00000001166	-	100	89.853	Ficedula_albicollis
ENSPSIG00000015198	SMG5	99	78.515	ENSFDAG00000017388	SMG5	100	78.119	Fukomys_damarensis
ENSPSIG00000015198	SMG5	97	62.487	ENSFHEG00000013939	smg5	98	62.588	Fundulus_heteroclitus
ENSPSIG00000015198	SMG5	100	62.206	ENSGMOG00000007310	smg5	99	63.256	Gadus_morhua
ENSPSIG00000015198	SMG5	100	84.660	ENSGALG00000029918	-	98	86.076	Gallus_gallus
ENSPSIG00000015198	SMG5	71	79.024	ENSGAFG00000021691	smg5	98	59.450	Gambusia_affinis
ENSPSIG00000015198	SMG5	100	62.659	ENSGACG00000013142	smg5	98	63.853	Gasterosteus_aculeatus
ENSPSIG00000015198	SMG5	100	94.563	ENSGAGG00000016131	SMG5	98	96.981	Gopherus_agassizii
ENSPSIG00000015198	SMG5	100	80.575	ENSGGOG00000010932	SMG5	98	80.933	Gorilla_gorilla
ENSPSIG00000015198	SMG5	100	66.149	ENSHBUG00000008654	smg5	98	67.372	Haplochromis_burtoni
ENSPSIG00000015198	SMG5	100	78.094	ENSHGLG00000019152	SMG5	98	78.515	Heterocephalus_glaber_female
ENSPSIG00000015198	SMG5	90	78.781	ENSHGLG00100015948	SMG5	97	79.254	Heterocephalus_glaber_male
ENSPSIG00000015198	SMG5	99	62.863	ENSHCOG00000010229	smg5	91	75.567	Hippocampus_comes
ENSPSIG00000015198	SMG5	100	63.729	ENSIPUG00000006624	Smg5	98	64.875	Ictalurus_punctatus
ENSPSIG00000015198	SMG5	100	80.377	ENSSTOG00000001780	SMG5	98	80.575	Ictidomys_tridecemlineatus
ENSPSIG00000015198	SMG5	100	79.464	ENSJJAG00000022763	Smg5	98	79.365	Jaculus_jaculus
ENSPSIG00000015198	SMG5	52	61.081	ENSKMAG00000014586	smg5	98	64.144	Kryptolebias_marmoratus
ENSPSIG00000015198	SMG5	100	66.408	ENSLBEG00000002145	smg5	98	66.246	Labrus_bergylta
ENSPSIG00000015198	SMG5	99	69.617	ENSLACG00000010521	SMG5	97	69.727	Latimeria_chalumnae
ENSPSIG00000015198	SMG5	56	49.589	ENSLOCG00000008380	smg5	97	62.528	Lepisosteus_oculatus
ENSPSIG00000015198	SMG5	99	79.563	ENSLAFG00000006241	SMG5	98	79.663	Loxodonta_africana
ENSPSIG00000015198	SMG5	100	80.476	ENSMFAG00000045357	SMG5	98	80.834	Macaca_fascicularis
ENSPSIG00000015198	SMG5	100	80.476	ENSMMUG00000000090	SMG5	98	80.834	Macaca_mulatta
ENSPSIG00000015198	SMG5	100	80.476	ENSMNEG00000044425	SMG5	98	80.834	Macaca_nemestrina
ENSPSIG00000015198	SMG5	100	74.334	ENSMLEG00000041192	SMG5	98	74.679	Mandrillus_leucophaeus
ENSPSIG00000015198	SMG5	100	63.587	ENSMAMG00000010683	smg5	100	63.336	Mastacembelus_armatus
ENSPSIG00000015198	SMG5	64	59.431	ENSMZEG00005016543	smg5	100	60.148	Maylandia_zebra
ENSPSIG00000015198	SMG5	100	63.698	ENSMZEG00005015815	smg5	98	64.615	Maylandia_zebra
ENSPSIG00000015198	SMG5	56	44.774	ENSMAUG00000000043	-	96	44.425	Mesocricetus_auratus
ENSPSIG00000015198	SMG5	100	78.827	ENSMAUG00000010381	Smg5	98	78.827	Mesocricetus_auratus
ENSPSIG00000015198	SMG5	100	80.476	ENSMICG00000002257	SMG5	98	80.735	Microcebus_murinus
ENSPSIG00000015198	SMG5	100	78.698	ENSMOCG00000016590	Smg5	98	78.437	Microtus_ochrogaster
ENSPSIG00000015198	SMG5	54	46.125	ENSMOCG00000008423	-	84	49.187	Microtus_ochrogaster
ENSPSIG00000015198	SMG5	100	61.040	ENSMMOG00000017199	smg5	98	61.440	Mola_mola
ENSPSIG00000015198	SMG5	80	37.073	ENSMODG00000004735	-	94	37.164	Monodelphis_domestica
ENSPSIG00000015198	SMG5	93	34.351	ENSMODG00000004532	-	86	38.293	Monodelphis_domestica
ENSPSIG00000015198	SMG5	79	37.437	ENSMODG00000010675	-	88	38.035	Monodelphis_domestica
ENSPSIG00000015198	SMG5	99	33.857	ENSMODG00000004511	-	99	34.185	Monodelphis_domestica
ENSPSIG00000015198	SMG5	87	82.273	ENSMODG00000016901	SMG5	96	82.500	Monodelphis_domestica
ENSPSIG00000015198	SMG5	100	62.140	ENSMALG00000010375	smg5	98	62.444	Monopterus_albus
ENSPSIG00000015198	SMG5	100	79.125	MGP_CAROLIEiJ_G0025163	Smg5	100	96.648	Mus_caroli
ENSPSIG00000015198	SMG5	100	79.125	ENSMUSG00000001415	Smg5	99	96.648	Mus_musculus
ENSPSIG00000015198	SMG5	100	79.146	MGP_PahariEiJ_G0026606	Smg5	100	96.648	Mus_pahari
ENSPSIG00000015198	SMG5	100	78.926	MGP_SPRETEiJ_G0026104	Smg5	100	96.648	Mus_spretus
ENSPSIG00000015198	SMG5	96	77.090	ENSMPUG00000004546	SMG5	100	77.306	Mustela_putorius_furo
ENSPSIG00000015198	SMG5	100	79.031	ENSMLUG00000008518	SMG5	98	79.606	Myotis_lucifugus
ENSPSIG00000015198	SMG5	100	79.960	ENSNGAG00000020706	Smg5	98	80.060	Nannospalax_galili
ENSPSIG00000015198	SMG5	81	56.608	ENSNGAG00000012101	-	97	43.750	Nannospalax_galili
ENSPSIG00000015198	SMG5	97	63.931	ENSNBRG00000004332	smg5	96	64.235	Neolamprologus_brichardi
ENSPSIG00000015198	SMG5	100	80.377	ENSNLEG00000012439	SMG5	98	80.735	Nomascus_leucogenys
ENSPSIG00000015198	SMG5	100	80.495	ENSMEUG00000012834	SMG5	98	80.792	Notamacropus_eugenii
ENSPSIG00000015198	SMG5	100	78.812	ENSOPRG00000009152	SMG5	98	78.911	Ochotona_princeps
ENSPSIG00000015198	SMG5	100	79.861	ENSODEG00000012237	SMG5	98	79.960	Octodon_degus
ENSPSIG00000015198	SMG5	100	62.613	ENSONIG00000008632	smg5	98	64.260	Oreochromis_niloticus
ENSPSIG00000015198	SMG5	90	40.022	ENSOCUG00000023338	-	97	39.912	Oryctolagus_cuniculus
ENSPSIG00000015198	SMG5	100	79.643	ENSOCUG00000012886	SMG5	100	79.841	Oryctolagus_cuniculus
ENSPSIG00000015198	SMG5	100	62.135	ENSORLG00000016239	smg5	98	64.867	Oryzias_latipes
ENSPSIG00000015198	SMG5	100	65.582	ENSORLG00020013127	smg5	98	66.732	Oryzias_latipes_hni
ENSPSIG00000015198	SMG5	100	65.782	ENSORLG00015019014	smg5	98	67.745	Oryzias_latipes_hsok
ENSPSIG00000015198	SMG5	82	60.832	ENSOMEG00000021330	smg5	90	62.678	Oryzias_melastigma
ENSPSIG00000015198	SMG5	100	78.890	ENSOGAG00000004966	SMG5	98	79.088	Otolemur_garnettii
ENSPSIG00000015198	SMG5	100	80.040	ENSOARG00000005778	SMG5	98	79.940	Ovis_aries
ENSPSIG00000015198	SMG5	99	44.510	ENSOARG00000011963	-	97	44.411	Ovis_aries
ENSPSIG00000015198	SMG5	100	80.476	ENSPPAG00000011996	SMG5	98	80.834	Pan_paniscus
ENSPSIG00000015198	SMG5	100	78.593	ENSPPRG00000011901	SMG5	100	78.394	Panthera_pardus
ENSPSIG00000015198	SMG5	99	73.774	ENSPTIG00000007892	SMG5	96	74.490	Panthera_tigris_altaica
ENSPSIG00000015198	SMG5	100	80.476	ENSPTRG00000023925	SMG5	98	80.834	Pan_troglodytes
ENSPSIG00000015198	SMG5	100	80.476	ENSPTRG00000049282	-	98	80.834	Pan_troglodytes
ENSPSIG00000015198	SMG5	100	80.476	ENSPANG00000011201	SMG5	98	80.834	Papio_anubis
ENSPSIG00000015198	SMG5	100	66.403	ENSPKIG00000009402	smg5	98	66.931	Paramormyrops_kingsleyae
ENSPSIG00000015198	SMG5	100	60.536	ENSPMGG00000010465	smg5	98	62.395	Periophthalmus_magnuspinnatus
ENSPSIG00000015198	SMG5	100	78.968	ENSPEMG00000001819	Smg5	98	78.932	Peromyscus_maniculatus_bairdii
ENSPSIG00000015198	SMG5	57	45.611	ENSPEMG00000010022	-	94	44.750	Peromyscus_maniculatus_bairdii
ENSPSIG00000015198	SMG5	100	49.370	ENSPMAG00000000410	smg5	98	50.531	Petromyzon_marinus
ENSPSIG00000015198	SMG5	100	81.845	ENSPCIG00000018938	SMG5	98	81.962	Phascolarctos_cinereus
ENSPSIG00000015198	SMG5	100	66.025	ENSPMEG00000014105	smg5	98	66.019	Poecilia_mexicana
ENSPSIG00000015198	SMG5	100	80.773	ENSPPYG00000000723	SMG5	98	81.132	Pongo_abelii
ENSPSIG00000015198	SMG5	71	97.207	ENSPCAG00000008412	SMG5	75	97.207	Procavia_capensis
ENSPSIG00000015198	SMG5	100	80.872	ENSPCOG00000004741	SMG5	98	81.070	Propithecus_coquereli
ENSPSIG00000015198	SMG5	100	71.599	ENSPVAG00000016748	SMG5	98	71.698	Pteropus_vampyrus
ENSPSIG00000015198	SMG5	100	61.918	ENSPNYG00000013397	smg5	98	63.555	Pundamilia_nyererei
ENSPSIG00000015198	SMG5	100	63.485	ENSPNAG00000028363	smg5	98	64.504	Pygocentrus_nattereri
ENSPSIG00000015198	SMG5	100	79.026	ENSRNOG00000019590	Smg5	98	79.026	Rattus_norvegicus
ENSPSIG00000015198	SMG5	100	80.178	ENSRBIG00000027428	SMG5	98	80.536	Rhinopithecus_bieti
ENSPSIG00000015198	SMG5	100	80.079	ENSRROG00000030035	SMG5	98	80.437	Rhinopithecus_roxellana
ENSPSIG00000015198	SMG5	100	80.575	ENSSBOG00000033339	SMG5	98	80.773	Saimiri_boliviensis_boliviensis
ENSPSIG00000015198	SMG5	89	36.667	ENSSHAG00000000561	-	98	36.272	Sarcophilus_harrisii
ENSPSIG00000015198	SMG5	57	38.806	ENSSHAG00000000935	-	83	38.806	Sarcophilus_harrisii
ENSPSIG00000015198	SMG5	99	34.661	ENSSHAG00000009572	-	96	34.565	Sarcophilus_harrisii
ENSPSIG00000015198	SMG5	100	81.441	ENSSHAG00000014163	SMG5	100	81.639	Sarcophilus_harrisii
ENSPSIG00000015198	SMG5	100	67.653	ENSSFOG00015024175	smg5	98	67.949	Scleropages_formosus
ENSPSIG00000015198	SMG5	100	62.138	ENSSMAG00000013059	smg5	98	64.209	Scophthalmus_maximus
ENSPSIG00000015198	SMG5	100	62.590	ENSSDUG00000007122	smg5	98	64.119	Seriola_dumerili
ENSPSIG00000015198	SMG5	100	62.816	ENSSLDG00000011418	smg5	98	64.350	Seriola_lalandi_dorsalis
ENSPSIG00000015198	SMG5	90	69.053	ENSSARG00000012484	SMG5	97	69.163	Sorex_araneus
ENSPSIG00000015198	SMG5	96	87.576	ENSSPUG00000002260	SMG5	100	89.372	Sphenodon_punctatus
ENSPSIG00000015198	SMG5	100	66.538	ENSSPAG00000014266	smg5	97	66.957	Stegastes_partitus
ENSPSIG00000015198	SMG5	100	80.575	ENSSSCG00000006490	-	100	79.835	Sus_scrofa
ENSPSIG00000015198	SMG5	52	37.544	ENSSSCG00000037182	-	81	38.264	Sus_scrofa
ENSPSIG00000015198	SMG5	97	62.322	ENSSSCG00000039308	-	96	63.136	Sus_scrofa
ENSPSIG00000015198	SMG5	100	90.387	ENSTGUG00000003748	-	98	90.387	Taeniopygia_guttata
ENSPSIG00000015198	SMG5	100	64.985	ENSTRUG00000012580	smg5	98	65.103	Takifugu_rubripes
ENSPSIG00000015198	SMG5	100	66.148	ENSTNIG00000010303	smg5	98	66.176	Tetraodon_nigroviridis
ENSPSIG00000015198	SMG5	58	97.537	ENSTBEG00000002777	SMG5	59	97.537	Tupaia_belangeri
ENSPSIG00000015198	SMG5	97	78.154	ENSTTRG00000001401	SMG5	94	77.846	Tursiops_truncatus
ENSPSIG00000015198	SMG5	100	78.649	ENSUAMG00000013721	SMG5	98	78.494	Ursus_americanus
ENSPSIG00000015198	SMG5	100	74.752	ENSUMAG00000018041	SMG5	98	74.008	Ursus_maritimus
ENSPSIG00000015198	SMG5	99	71.329	ENSVPAG00000009446	SMG5	99	71.230	Vicugna_pacos
ENSPSIG00000015198	SMG5	100	79.286	ENSVVUG00000005887	SMG5	98	79.088	Vulpes_vulpes
ENSPSIG00000015198	SMG5	79	70.750	ENSXETG00000033791	SMG5	99	70.750	Xenopus_tropicalis
ENSPSIG00000015198	SMG5	58	79.851	ENSXCOG00000004379	smg5	93	71.429	Xiphophorus_couchianus
ENSPSIG00000015198	SMG5	100	65.849	ENSXMAG00000013499	smg5	98	66.960	Xiphophorus_maculatus