EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPSIG00000015720 (Gene tree)
Gene ID
102462854
Gene Symbol
LSM3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Pelodiscus_sinensis
Status
putative
Strand
Plus strand
Length
14100 bases
Position
chrJH211017.1:759530-773629
Accession
102462854
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPSIP00000017677LSMPF01423.223.3e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPSIT00000017756LSM3-201730XM_006131272ENSPSIP00000017677102 (aa)XP_006131334K7GBL6
Gene Model
Click here to download ENSPSIG00000015720's gene model file
Pathways
Pathway IDPathway NameSource
pss03018RNA degradationKEGG
pss03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000015720's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPSIG00000015720LSM38432.222ENSPSIG00000015823-7631.707
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPSIG00000015720LSM310099.020ENSG00000170860LSM310099.020Homo_sapiens
ENSPSIG00000015720LSM310096.078ENSAPOG00000018947lsm310096.078Acanthochromis_polyacanthus
ENSPSIG00000015720LSM310099.020ENSAMEG00000009405LSM310099.020Ailuropoda_melanoleuca
ENSPSIG00000015720LSM310095.098ENSACIG00000004574lsm37195.098Amphilophus_citrinellus
ENSPSIG00000015720LSM310096.078ENSAOCG00000007658lsm310096.078Amphiprion_ocellaris
ENSPSIG00000015720LSM310096.078ENSAPEG00000018621lsm310096.078Amphiprion_percula
ENSPSIG00000015720LSM310096.078ENSATEG00000005153lsm310096.078Anabas_testudineus
ENSPSIG00000015720LSM393100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSPSIG00000015720LSM3100100.000ENSACAG00000013503LSM3100100.000Anolis_carolinensis
ENSPSIG00000015720LSM310099.020ENSANAG00000034627LSM310099.020Aotus_nancymaae
ENSPSIG00000015720LSM310095.098ENSANAG00000002903-10095.098Aotus_nancymaae
ENSPSIG00000015720LSM39595.876ENSACLG00000001726-9495.876Astatotilapia_calliptera
ENSPSIG00000015720LSM310098.039ENSAMXG00000041214lsm310098.039Astyanax_mexicanus
ENSPSIG00000015720LSM394100.000ENSBTAG00000007363LSM3100100.000Bos_taurus
ENSPSIG00000015720LSM310070.588WBGene00003077lsm-310070.588Caenorhabditis_elegans
ENSPSIG00000015720LSM310097.059ENSCAFG00000001760LSM310097.059Canis_familiaris
ENSPSIG00000015720LSM310090.196ENSCAFG00020016680-10090.196Canis_lupus_dingo
ENSPSIG00000015720LSM310096.078ENSCAFG00020026452-10096.078Canis_lupus_dingo
ENSPSIG00000015720LSM310097.059ENSCAFG00020021584-10097.059Canis_lupus_dingo
ENSPSIG00000015720LSM310088.785ENSCAFG00020020950-10088.785Canis_lupus_dingo
ENSPSIG00000015720LSM310097.059ENSCAFG00020017266-10097.059Canis_lupus_dingo
ENSPSIG00000015720LSM310099.020ENSCHIG00000024650LSM310099.020Capra_hircus
ENSPSIG00000015720LSM39979.208ENSTSYG00000028528-9979.208Carlito_syrichta
ENSPSIG00000015720LSM310098.039ENSTSYG00000005204-10098.039Carlito_syrichta
ENSPSIG00000015720LSM394100.000ENSCAPG00000015760LSM3100100.000Cavia_aperea
ENSPSIG00000015720LSM310099.020ENSCPOG00000034071LSM310099.020Cavia_porcellus
ENSPSIG00000015720LSM310079.412ENSCCAG00000032763-10079.412Cebus_capucinus
ENSPSIG00000015720LSM310099.020ENSCCAG00000036499-10099.020Cebus_capucinus
ENSPSIG00000015720LSM310099.020ENSCCAG00000019503-10099.020Cebus_capucinus
ENSPSIG00000015720LSM310099.020ENSCATG00000039421LSM310099.020Cercocebus_atys
ENSPSIG00000015720LSM39978.218ENSCATG00000031630-9978.218Cercocebus_atys
ENSPSIG00000015720LSM310099.020ENSCLAG00000015997LSM310099.020Chinchilla_lanigera
ENSPSIG00000015720LSM310094.118ENSCSAG00000019525-10094.118Chlorocebus_sabaeus
ENSPSIG00000015720LSM3100100.000ENSCPBG00000014531LSM3100100.000Chrysemys_picta_bellii
ENSPSIG00000015720LSM310082.692ENSCSAVG00000009542-10082.692Ciona_savignyi
ENSPSIG00000015720LSM310096.078ENSCANG00000018782-10096.078Colobus_angolensis_palliatus
ENSPSIG00000015720LSM310096.078ENSCANG00000038037-10096.078Colobus_angolensis_palliatus
ENSPSIG00000015720LSM310099.020ENSCANG00000033944-10099.020Colobus_angolensis_palliatus
ENSPSIG00000015720LSM310099.020ENSCGRG00001017598Lsm310099.020Cricetulus_griseus_chok1gshd
ENSPSIG00000015720LSM39883.000ENSCGRG00001011396-10083.000Cricetulus_griseus_chok1gshd
ENSPSIG00000015720LSM310074.757ENSCGRG00001008639-10074.757Cricetulus_griseus_chok1gshd
ENSPSIG00000015720LSM310099.020ENSCGRG00000016159Lsm310099.020Cricetulus_griseus_crigri
ENSPSIG00000015720LSM39384.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSPSIG00000015720LSM310096.078ENSCSEG00000015071lsm37796.078Cynoglossus_semilaevis
ENSPSIG00000015720LSM310095.098ENSCVAG00000006933lsm310095.098Cyprinodon_variegatus
ENSPSIG00000015720LSM310096.078ENSDARG00000089663lsm310096.078Danio_rerio
ENSPSIG00000015720LSM310099.020ENSDNOG00000030808LSM310099.020Dasypus_novemcinctus
ENSPSIG00000015720LSM310079.412ENSDORG00000024490-10079.412Dipodomys_ordii
ENSPSIG00000015720LSM310099.020ENSDORG00000006894-10099.020Dipodomys_ordii
ENSPSIG00000015720LSM310077.670FBgn0051184LSm310077.670Drosophila_melanogaster
ENSPSIG00000015720LSM310099.020ENSETEG00000016207LSM310099.020Echinops_telfairi
ENSPSIG00000015720LSM310088.235ENSEBUG00000004943lsm310088.235Eptatretus_burgeri
ENSPSIG00000015720LSM310099.020ENSEASG00005015443LSM310099.020Equus_asinus_asinus
ENSPSIG00000015720LSM310099.020ENSECAG00000007803LSM310099.020Equus_caballus
ENSPSIG00000015720LSM310097.059ENSELUG00000018922lsm310097.059Esox_lucius
ENSPSIG00000015720LSM310074.510ENSFCAG00000044344-10074.510Felis_catus
ENSPSIG00000015720LSM310099.020ENSFCAG00000038453LSM310099.020Felis_catus
ENSPSIG00000015720LSM3100100.000ENSFALG00000012644LSM3100100.000Ficedula_albicollis
ENSPSIG00000015720LSM310099.020ENSFDAG00000011470LSM310099.020Fukomys_damarensis
ENSPSIG00000015720LSM310096.078ENSFHEG00000000876lsm310096.078Fundulus_heteroclitus
ENSPSIG00000015720LSM39396.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSPSIG00000015720LSM310096.078ENSGAFG00000013965lsm310096.078Gambusia_affinis
ENSPSIG00000015720LSM310096.078ENSGACG00000003488lsm310096.078Gasterosteus_aculeatus
ENSPSIG00000015720LSM3100100.000ENSGAGG00000025707LSM3100100.000Gopherus_agassizii
ENSPSIG00000015720LSM310099.020ENSGGOG00000010006LSM310099.020Gorilla_gorilla
ENSPSIG00000015720LSM310096.078ENSHBUG00000022399lsm310096.078Haplochromis_burtoni
ENSPSIG00000015720LSM310079.412ENSHGLG00000015564-10079.412Heterocephalus_glaber_female
ENSPSIG00000015720LSM310099.020ENSHGLG00000000651LSM310099.020Heterocephalus_glaber_female
ENSPSIG00000015720LSM310079.412ENSHGLG00100010658-10079.412Heterocephalus_glaber_male
ENSPSIG00000015720LSM310099.020ENSHGLG00100011343LSM310099.020Heterocephalus_glaber_male
ENSPSIG00000015720LSM310095.098ENSHCOG00000013481lsm310095.098Hippocampus_comes
ENSPSIG00000015720LSM310096.078ENSIPUG00000009207lsm310096.078Ictalurus_punctatus
ENSPSIG00000015720LSM310099.020ENSSTOG00000006842LSM310099.020Ictidomys_tridecemlineatus
ENSPSIG00000015720LSM310090.196ENSJJAG00000012797-10090.196Jaculus_jaculus
ENSPSIG00000015720LSM310099.020ENSJJAG00000017351Lsm310099.020Jaculus_jaculus
ENSPSIG00000015720LSM39974.510ENSJJAG00000018311-10074.510Jaculus_jaculus
ENSPSIG00000015720LSM310095.098ENSKMAG00000015182lsm310095.098Kryptolebias_marmoratus
ENSPSIG00000015720LSM39693.878ENSLBEG00000021292lsm310093.878Labrus_bergylta
ENSPSIG00000015720LSM310098.039ENSLOCG00000013560lsm310098.039Lepisosteus_oculatus
ENSPSIG00000015720LSM310098.058ENSLAFG00000023308LSM310098.058Loxodonta_africana
ENSPSIG00000015720LSM310099.020ENSMFAG00000003185LSM310099.020Macaca_fascicularis
ENSPSIG00000015720LSM310076.471ENSMMUG00000043596-10076.471Macaca_mulatta
ENSPSIG00000015720LSM310099.020ENSMMUG00000023126LSM310099.020Macaca_mulatta
ENSPSIG00000015720LSM39677.551ENSMMUG00000002294-9577.551Macaca_mulatta
ENSPSIG00000015720LSM39980.198ENSMNEG00000037686-9980.198Macaca_nemestrina
ENSPSIG00000015720LSM310099.020ENSMNEG00000043632LSM310099.020Macaca_nemestrina
ENSPSIG00000015720LSM310099.020ENSMLEG00000036162LSM310099.020Mandrillus_leucophaeus
ENSPSIG00000015720LSM310096.078ENSMAMG00000012807lsm310096.078Mastacembelus_armatus
ENSPSIG00000015720LSM310096.078ENSMZEG00005016682lsm37396.078Maylandia_zebra
ENSPSIG00000015720LSM394100.000ENSMGAG00000007776LSM3100100.000Meleagris_gallopavo
ENSPSIG00000015720LSM310084.314ENSMICG00000027821-10084.314Microcebus_murinus
ENSPSIG00000015720LSM310098.039ENSMICG00000032361-10098.039Microcebus_murinus
ENSPSIG00000015720LSM310099.020ENSMOCG00000014269Lsm310099.020Microtus_ochrogaster
ENSPSIG00000015720LSM310095.098ENSMMOG00000020715lsm310095.098Mola_mola
ENSPSIG00000015720LSM310098.039ENSMODG00000007275LSM310098.039Monodelphis_domestica
ENSPSIG00000015720LSM310096.078ENSMALG00000006485lsm310096.078Monopterus_albus
ENSPSIG00000015720LSM310099.020ENSMUSG00000034192Lsm310099.020Mus_musculus
ENSPSIG00000015720LSM310099.020MGP_PahariEiJ_G0022402Lsm310099.020Mus_pahari
ENSPSIG00000015720LSM310099.020MGP_SPRETEiJ_G0029681Lsm310099.020Mus_spretus
ENSPSIG00000015720LSM38391.765ENSMPUG00000017256-10091.765Mustela_putorius_furo
ENSPSIG00000015720LSM39787.879ENSMPUG00000019120-9787.879Mustela_putorius_furo
ENSPSIG00000015720LSM310099.020ENSMLUG00000010677LSM310099.020Myotis_lucifugus
ENSPSIG00000015720LSM310091.176ENSMLUG00000024700-10091.176Myotis_lucifugus
ENSPSIG00000015720LSM310073.529ENSNGAG00000013716-10073.529Nannospalax_galili
ENSPSIG00000015720LSM39980.198ENSNGAG00000010207-9980.198Nannospalax_galili
ENSPSIG00000015720LSM310099.020ENSNGAG00000022450Lsm310099.020Nannospalax_galili
ENSPSIG00000015720LSM310096.078ENSNBRG00000014318lsm310096.078Neolamprologus_brichardi
ENSPSIG00000015720LSM310099.020ENSNLEG00000005079LSM310099.020Nomascus_leucogenys
ENSPSIG00000015720LSM310090.196ENSNLEG00000030229-10090.196Nomascus_leucogenys
ENSPSIG00000015720LSM310091.176ENSODEG00000019403-10091.176Octodon_degus
ENSPSIG00000015720LSM310099.020ENSODEG00000001726LSM310099.020Octodon_degus
ENSPSIG00000015720LSM310098.039ENSODEG00000019740-10098.039Octodon_degus
ENSPSIG00000015720LSM310097.059ENSODEG00000019158-10097.059Octodon_degus
ENSPSIG00000015720LSM310096.078ENSONIG00000000370lsm310096.078Oreochromis_niloticus
ENSPSIG00000015720LSM310096.078ENSONIG00000021369-10096.078Oreochromis_niloticus
ENSPSIG00000015720LSM310098.039ENSOANG00000012273LSM310098.039Ornithorhynchus_anatinus
ENSPSIG00000015720LSM310099.020ENSOCUG00000027653-10099.020Oryctolagus_cuniculus
ENSPSIG00000015720LSM310094.118ENSOCUG00000011088-10094.118Oryctolagus_cuniculus
ENSPSIG00000015720LSM310094.118ENSORLG00000025900lsm310094.118Oryzias_latipes
ENSPSIG00000015720LSM310094.118ENSORLG00020007125lsm310094.118Oryzias_latipes_hni
ENSPSIG00000015720LSM310094.118ENSORLG00015002944lsm310094.118Oryzias_latipes_hsok
ENSPSIG00000015720LSM310094.118ENSOMEG00000001915lsm310094.118Oryzias_melastigma
ENSPSIG00000015720LSM39697.959ENSOGAG00000028858-10097.959Otolemur_garnettii
ENSPSIG00000015720LSM310099.020ENSOGAG00000007659-10099.020Otolemur_garnettii
ENSPSIG00000015720LSM310089.216ENSOGAG00000033051-10089.216Otolemur_garnettii
ENSPSIG00000015720LSM310098.058ENSOARG00000000600LSM310098.058Ovis_aries
ENSPSIG00000015720LSM310099.020ENSPPAG00000034074LSM310099.020Pan_paniscus
ENSPSIG00000015720LSM39991.089ENSPPRG00000010610-8991.089Panthera_pardus
ENSPSIG00000015720LSM310099.020ENSPPRG00000012912-10099.020Panthera_pardus
ENSPSIG00000015720LSM310098.039ENSPPRG00000020953-10098.039Panthera_pardus
ENSPSIG00000015720LSM310099.020ENSPTIG00000003463-10099.020Panthera_tigris_altaica
ENSPSIG00000015720LSM310099.020ENSPTIG00000013072-10099.020Panthera_tigris_altaica
ENSPSIG00000015720LSM310099.020ENSPTRG00000014650LSM310099.020Pan_troglodytes
ENSPSIG00000015720LSM310077.451ENSPANG00000032192-10077.451Papio_anubis
ENSPSIG00000015720LSM310099.020ENSPANG00000009378LSM310099.020Papio_anubis
ENSPSIG00000015720LSM310099.020ENSPKIG00000008037lsm39199.020Paramormyrops_kingsleyae
ENSPSIG00000015720LSM39394.737ENSPMGG00000012103lsm39694.737Periophthalmus_magnuspinnatus
ENSPSIG00000015720LSM310083.333ENSPEMG00000020213-10083.333Peromyscus_maniculatus_bairdii
ENSPSIG00000015720LSM310099.020ENSPEMG00000015797Lsm310099.020Peromyscus_maniculatus_bairdii
ENSPSIG00000015720LSM310096.078ENSPFOG00000008372lsm310096.078Poecilia_formosa
ENSPSIG00000015720LSM310096.078ENSPLAG00000000563lsm310096.078Poecilia_latipinna
ENSPSIG00000015720LSM310096.078ENSPMEG00000022052lsm310096.078Poecilia_mexicana
ENSPSIG00000015720LSM310096.078ENSPREG00000022485lsm310096.078Poecilia_reticulata
ENSPSIG00000015720LSM310099.020ENSPPYG00000013402LSM310099.020Pongo_abelii
ENSPSIG00000015720LSM310099.020ENSPCAG00000017077LSM310099.020Procavia_capensis
ENSPSIG00000015720LSM39477.083ENSPCOG00000014435-9877.083Propithecus_coquereli
ENSPSIG00000015720LSM310098.039ENSPCOG00000016217-10098.039Propithecus_coquereli
ENSPSIG00000015720LSM310099.020ENSPVAG00000016795LSM310099.020Pteropus_vampyrus
ENSPSIG00000015720LSM310096.078ENSPNYG00000009552lsm37396.078Pundamilia_nyererei
ENSPSIG00000015720LSM310098.039ENSPNAG00000023467lsm310098.039Pygocentrus_nattereri
ENSPSIG00000015720LSM310099.020ENSRNOG00000008733Lsm310099.020Rattus_norvegicus
ENSPSIG00000015720LSM310099.020ENSRBIG00000034399LSM310099.020Rhinopithecus_bieti
ENSPSIG00000015720LSM310082.353ENSRBIG00000043783-10082.353Rhinopithecus_bieti
ENSPSIG00000015720LSM310083.333ENSRROG00000039868-10083.333Rhinopithecus_roxellana
ENSPSIG00000015720LSM310088.235ENSRROG00000044047-10088.235Rhinopithecus_roxellana
ENSPSIG00000015720LSM310080.392ENSRROG00000044056-10080.392Rhinopithecus_roxellana
ENSPSIG00000015720LSM310099.020ENSRROG00000033276-10099.020Rhinopithecus_roxellana
ENSPSIG00000015720LSM310099.020ENSSBOG00000024310LSM310099.020Saimiri_boliviensis_boliviensis
ENSPSIG00000015720LSM310098.039ENSSFOG00015007071lsm310098.039Scleropages_formosus
ENSPSIG00000015720LSM310096.078ENSSMAG00000001818lsm310096.078Scophthalmus_maximus
ENSPSIG00000015720LSM310096.078ENSSDUG00000006040lsm310096.078Seriola_dumerili
ENSPSIG00000015720LSM310096.078ENSSLDG00000006399lsm310096.078Seriola_lalandi_dorsalis
ENSPSIG00000015720LSM357100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSPSIG00000015720LSM393100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSPSIG00000015720LSM310090.196ENSSPUG00000005394LSM310090.196Sphenodon_punctatus
ENSPSIG00000015720LSM310085.294ENSSPAG00000000934lsm310085.294Stegastes_partitus
ENSPSIG00000015720LSM310099.020ENSSSCG00000011601LSM310099.020Sus_scrofa
ENSPSIG00000015720LSM39576.289ENSSSCG00000023718-9976.289Sus_scrofa
ENSPSIG00000015720LSM3100100.000ENSTGUG00000008327LSM3100100.000Taeniopygia_guttata
ENSPSIG00000015720LSM310095.098ENSTRUG00000023175lsm310095.098Takifugu_rubripes
ENSPSIG00000015720LSM310095.098ENSTNIG00000005589lsm310095.098Tetraodon_nigroviridis
ENSPSIG00000015720LSM310089.216ENSTBEG00000001050-9989.216Tupaia_belangeri
ENSPSIG00000015720LSM310099.020ENSTTRG00000011197LSM310099.020Tursiops_truncatus
ENSPSIG00000015720LSM310099.020ENSUAMG00000017250-10099.020Ursus_americanus
ENSPSIG00000015720LSM310099.020ENSUMAG00000015905LSM310099.020Ursus_maritimus
ENSPSIG00000015720LSM393100.000ENSVPAG00000010709LSM3100100.000Vicugna_pacos
ENSPSIG00000015720LSM310093.137ENSVVUG00000005684-10093.137Vulpes_vulpes
ENSPSIG00000015720LSM310090.196ENSVVUG00000024228-10090.196Vulpes_vulpes
ENSPSIG00000015720LSM310094.118ENSVVUG00000006481-10094.118Vulpes_vulpes
ENSPSIG00000015720LSM310095.098ENSVVUG00000007332-9195.098Vulpes_vulpes
ENSPSIG00000015720LSM310095.098ENSVVUG00000029294-10095.098Vulpes_vulpes
ENSPSIG00000015720LSM310097.059ENSXETG00000011534lsm310097.059Xenopus_tropicalis
ENSPSIG00000015720LSM310096.078ENSXCOG00000017432LSM310096.078Xiphophorus_couchianus
ENSPSIG00000015720LSM310096.078ENSXMAG00000009151lsm310096.078Xiphophorus_maculatus

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