EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPSIG00000016144 (Gene tree)
Gene ID
102454887
Gene Symbol
CPSF3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Pelodiscus_sinensis
Status
putative
Strand
Minus strand
Length
43715 bases
Position
chrJH209035.1:864910-908624
Accession
102454887
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPSIP00000018230CPSF73-100_CPF11718.81.4e-5411
ENSPSIP00000018230Beta-CaspPF10996.83.4e-3411
ENSPSIP00000018230Lactamase_BPF00753.277.9e-1911
ENSPSIP00000018230RMMBLPF07521.121.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPSIT00000018315CPSF3-2012508XM_006123615ENSPSIP00000018230682 (aa)-K7GD69
Gene Model
Click here to download ENSPSIG00000016144's gene model file
Pathways
Pathway IDPathway NameSource
pss03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000016144's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPSIG00000016144CPSF37038.800ENSPSIG00000002824INTS118138.800
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPSIG00000016144CPSF310093.704ENSG00000119203CPSF3100100.000Homo_sapiens
ENSPSIG00000016144CPSF39984.018ENSAPOG00000022087cpsf39984.018Acanthochromis_polyacanthus
ENSPSIG00000016144CPSF37395.783ENSAPOG00000012241CPSF39095.783Acanthochromis_polyacanthus
ENSPSIG00000016144CPSF310094.290ENSAMEG00000008493CPSF39994.290Ailuropoda_melanoleuca
ENSPSIG00000016144CPSF39281.905ENSACIG00000009846cpsf39981.905Amphilophus_citrinellus
ENSPSIG00000016144CPSF39286.508ENSACIG00000023663CPSF39986.508Amphilophus_citrinellus
ENSPSIG00000016144CPSF39984.164ENSAOCG00000022056cpsf39489.813Amphiprion_ocellaris
ENSPSIG00000016144CPSF39986.784ENSAOCG00000010077CPSF39886.784Amphiprion_ocellaris
ENSPSIG00000016144CPSF39984.311ENSAPEG00000019526cpsf39885.561Amphiprion_percula
ENSPSIG00000016144CPSF39986.784ENSAPEG00000021167CPSF39886.784Amphiprion_percula
ENSPSIG00000016144CPSF39982.379ENSATEG00000014525CPSF39882.379Anabas_testudineus
ENSPSIG00000016144CPSF39984.435ENSATEG00000003959cpsf39884.435Anabas_testudineus
ENSPSIG00000016144CPSF39896.852ENSAPLG00000006941CPSF39896.852Anas_platyrhynchos
ENSPSIG00000016144CPSF39394.173ENSACAG00000001759CPSF39994.173Anolis_carolinensis
ENSPSIG00000016144CPSF310086.950ENSANAG00000031254CPSF39988.606Aotus_nancymaae
ENSPSIG00000016144CPSF39885.907ENSACLG00000014484cpsf39985.907Astatotilapia_calliptera
ENSPSIG00000016144CPSF39286.349ENSACLG00000018846CPSF39986.349Astatotilapia_calliptera
ENSPSIG00000016144CPSF39986.765ENSAMXG00000004786cpsf39886.765Astyanax_mexicanus
ENSPSIG00000016144CPSF310094.143ENSBTAG00000019735CPSF39994.143Bos_taurus
ENSPSIG00000016144CPSF39258.879WBGene00013460cpsf-39058.879Caenorhabditis_elegans
ENSPSIG00000016144CPSF310093.851ENSCJAG00000006276CPSF39993.851Callithrix_jacchus
ENSPSIG00000016144CPSF310094.290ENSCAFG00000003375CPSF39594.290Canis_familiaris
ENSPSIG00000016144CPSF39095.631ENSCAFG00020026799CPSF39995.631Canis_lupus_dingo
ENSPSIG00000016144CPSF310094.143ENSCHIG00000013973CPSF39994.143Capra_hircus
ENSPSIG00000016144CPSF310093.704ENSTSYG00000002967CPSF39993.704Carlito_syrichta
ENSPSIG00000016144CPSF39893.853ENSCAPG00000013851CPSF310093.853Cavia_aperea
ENSPSIG00000016144CPSF310092.972ENSCPOG00000011299CPSF39992.972Cavia_porcellus
ENSPSIG00000016144CPSF310093.704ENSCCAG00000036730CPSF39994.603Cebus_capucinus
ENSPSIG00000016144CPSF310091.374ENSCATG00000014770CPSF39997.241Cercocebus_atys
ENSPSIG00000016144CPSF310093.265ENSCLAG00000002727CPSF39993.265Chinchilla_lanigera
ENSPSIG00000016144CPSF310085.944ENSCSAG00000007125CPSF39985.944Chlorocebus_sabaeus
ENSPSIG00000016144CPSF387100.000ENSCHOG00000000180CPSF38568.596Choloepus_hoffmanni
ENSPSIG00000016144CPSF39997.797ENSCPBG00000014074CPSF39897.797Chrysemys_picta_bellii
ENSPSIG00000016144CPSF39967.350ENSCING00000007214-9867.350Ciona_intestinalis
ENSPSIG00000016144CPSF310082.577ENSCANG00000034435CPSF39982.577Colobus_angolensis_palliatus
ENSPSIG00000016144CPSF310093.558ENSCGRG00001013134Cpsf39993.558Cricetulus_griseus_chok1gshd
ENSPSIG00000016144CPSF310093.558ENSCGRG00000018319Cpsf39993.558Cricetulus_griseus_crigri
ENSPSIG00000016144CPSF39985.756ENSCSEG00000002021CPSF39986.553Cynoglossus_semilaevis
ENSPSIG00000016144CPSF39987.078ENSCVAG00000015067CPSF39887.078Cyprinodon_variegatus
ENSPSIG00000016144CPSF39987.372ENSDARG00000027649cpsf39887.372Danio_rerio
ENSPSIG00000016144CPSF310092.690ENSDNOG00000008940CPSF39592.690Dasypus_novemcinctus
ENSPSIG00000016144CPSF39594.769ENSDORG00000014263Cpsf39994.769Dipodomys_ordii
ENSPSIG00000016144CPSF39966.421FBgn0261065Cpsf739866.421Drosophila_melanogaster
ENSPSIG00000016144CPSF39085.481ENSETEG00000003893CPSF39485.481Echinops_telfairi
ENSPSIG00000016144CPSF39978.223ENSEBUG00000009018cpsf39878.367Eptatretus_burgeri
ENSPSIG00000016144CPSF310094.290ENSEASG00005003970CPSF39994.290Equus_asinus_asinus
ENSPSIG00000016144CPSF310094.290ENSECAG00000019911CPSF39796.477Equus_caballus
ENSPSIG00000016144CPSF310078.917ENSEEUG00000015422CPSF39978.917Erinaceus_europaeus
ENSPSIG00000016144CPSF39987.225ENSELUG00000013775cpsf39887.225Esox_lucius
ENSPSIG00000016144CPSF310094.143ENSFCAG00000007852CPSF310094.900Felis_catus
ENSPSIG00000016144CPSF39596.909ENSFALG00000006572CPSF310096.909Ficedula_albicollis
ENSPSIG00000016144CPSF39992.500ENSFDAG00000006317CPSF39992.500Fukomys_damarensis
ENSPSIG00000016144CPSF39983.578ENSFHEG00000014774cpsf39983.578Fundulus_heteroclitus
ENSPSIG00000016144CPSF35968.537ENSFHEG00000012186CPSF39968.537Fundulus_heteroclitus
ENSPSIG00000016144CPSF310085.212ENSGMOG00000003157cpsf39985.212Gadus_morhua
ENSPSIG00000016144CPSF39994.868ENSGALG00000016424CPSF39995.591Gallus_gallus
ENSPSIG00000016144CPSF39987.353ENSGAFG00000008016CPSF39887.353Gambusia_affinis
ENSPSIG00000016144CPSF39282.381ENSGAFG00000019449cpsf39982.381Gambusia_affinis
ENSPSIG00000016144CPSF36898.073ENSGAGG00000025583CPSF39398.073Gopherus_agassizii
ENSPSIG00000016144CPSF310091.547ENSGGOG00000001757CPSF310094.488Gorilla_gorilla
ENSPSIG00000016144CPSF39985.044ENSHBUG00000001188cpsf39985.044Haplochromis_burtoni
ENSPSIG00000016144CPSF35979.506ENSHBUG00000014332CPSF39979.506Haplochromis_burtoni
ENSPSIG00000016144CPSF310092.679ENSHGLG00000000666CPSF39992.679Heterocephalus_glaber_female
ENSPSIG00000016144CPSF310092.679ENSHGLG00100007765CPSF39992.679Heterocephalus_glaber_male
ENSPSIG00000016144CPSF39984.164ENSHCOG00000007251cpsf39984.164Hippocampus_comes
ENSPSIG00000016144CPSF39984.706ENSHCOG00000015957CPSF39784.706Hippocampus_comes
ENSPSIG00000016144CPSF39985.316ENSIPUG00000023488cpsf39885.316Ictalurus_punctatus
ENSPSIG00000016144CPSF310094.143ENSSTOG00000004476CPSF39994.143Ictidomys_tridecemlineatus
ENSPSIG00000016144CPSF310092.972ENSJJAG00000023415Cpsf39992.972Jaculus_jaculus
ENSPSIG00000016144CPSF310083.016ENSKMAG00000002806cpsf39983.016Kryptolebias_marmoratus
ENSPSIG00000016144CPSF39986.931ENSKMAG00000007317CPSF39886.931Kryptolebias_marmoratus
ENSPSIG00000016144CPSF39587.827ENSLBEG00000013492CPSF39887.827Labrus_bergylta
ENSPSIG00000016144CPSF39977.827ENSLBEG00000020569cpsf39477.827Labrus_bergylta
ENSPSIG00000016144CPSF35578.933ENSLBEG00000015018-9978.933Labrus_bergylta
ENSPSIG00000016144CPSF39982.353ENSLACG00000008308CPSF39882.353Latimeria_chalumnae
ENSPSIG00000016144CPSF39987.683ENSLOCG00000016823cpsf39887.683Lepisosteus_oculatus
ENSPSIG00000016144CPSF39993.953ENSLAFG00000009467CPSF39993.953Loxodonta_africana
ENSPSIG00000016144CPSF310093.704ENSMFAG00000001339CPSF39994.427Macaca_fascicularis
ENSPSIG00000016144CPSF39594.436ENSMMUG00000018038CPSF310094.436Macaca_mulatta
ENSPSIG00000016144CPSF310080.966ENSMNEG00000039447CPSF39980.966Macaca_nemestrina
ENSPSIG00000016144CPSF310093.851ENSMLEG00000026825CPSF39993.851Mandrillus_leucophaeus
ENSPSIG00000016144CPSF39984.751ENSMAMG00000003076cpsf39984.751Mastacembelus_armatus
ENSPSIG00000016144CPSF39284.810ENSMAMG00000008835CPSF39984.810Mastacembelus_armatus
ENSPSIG00000016144CPSF39987.372ENSMZEG00005006258CPSF39887.372Maylandia_zebra
ENSPSIG00000016144CPSF39985.044ENSMZEG00005014358cpsf39985.044Maylandia_zebra
ENSPSIG00000016144CPSF39895.652ENSMGAG00000013995CPSF310095.652Meleagris_gallopavo
ENSPSIG00000016144CPSF35589.096ENSMAUG00000000166Cpsf310089.096Mesocricetus_auratus
ENSPSIG00000016144CPSF310088.726ENSMICG00000002363CPSF310088.906Microcebus_murinus
ENSPSIG00000016144CPSF310089.312ENSMOCG00000020067Cpsf39989.312Microtus_ochrogaster
ENSPSIG00000016144CPSF39581.860ENSMMOG00000018212CPSF39881.860Mola_mola
ENSPSIG00000016144CPSF37377.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSPSIG00000016144CPSF310093.043ENSMODG00000014703CPSF39993.043Monodelphis_domestica
ENSPSIG00000016144CPSF310084.773ENSMALG00000016416cpsf39984.773Monopterus_albus
ENSPSIG00000016144CPSF39383.281ENSMALG00000011474CPSF39983.281Monopterus_albus
ENSPSIG00000016144CPSF310093.265MGP_CAROLIEiJ_G0017640Cpsf39993.265Mus_caroli
ENSPSIG00000016144CPSF310093.265ENSMUSG00000054309Cpsf39699.580Mus_musculus
ENSPSIG00000016144CPSF310093.119MGP_PahariEiJ_G0029397Cpsf39993.119Mus_pahari
ENSPSIG00000016144CPSF310093.265MGP_SPRETEiJ_G0018481Cpsf39993.265Mus_spretus
ENSPSIG00000016144CPSF310093.851ENSMPUG00000013213CPSF39993.851Mustela_putorius_furo
ENSPSIG00000016144CPSF310093.567ENSMLUG00000010636CPSF39993.567Myotis_lucifugus
ENSPSIG00000016144CPSF310093.265ENSNGAG00000019836Cpsf39993.265Nannospalax_galili
ENSPSIG00000016144CPSF39984.751ENSNBRG00000004770cpsf39984.751Neolamprologus_brichardi
ENSPSIG00000016144CPSF39286.349ENSNBRG00000010525CPSF39986.349Neolamprologus_brichardi
ENSPSIG00000016144CPSF310093.704ENSNLEG00000013359CPSF310094.436Nomascus_leucogenys
ENSPSIG00000016144CPSF39564.087ENSMEUG00000013117-9464.087Notamacropus_eugenii
ENSPSIG00000016144CPSF310085.212ENSOPRG00000008902CPSF39985.212Ochotona_princeps
ENSPSIG00000016144CPSF310093.119ENSODEG00000003129CPSF39993.119Octodon_degus
ENSPSIG00000016144CPSF39985.191ENSONIG00000018812cpsf39985.191Oreochromis_niloticus
ENSPSIG00000016144CPSF38394.504ENSOANG00000008577CPSF310094.504Ornithorhynchus_anatinus
ENSPSIG00000016144CPSF310093.997ENSOCUG00000003728CPSF39993.997Oryctolagus_cuniculus
ENSPSIG00000016144CPSF39982.845ENSORLG00000018854cpsf39982.845Oryzias_latipes
ENSPSIG00000016144CPSF39982.698ENSORLG00020013331cpsf39982.698Oryzias_latipes_hni
ENSPSIG00000016144CPSF39982.845ENSORLG00015011017cpsf39982.845Oryzias_latipes_hsok
ENSPSIG00000016144CPSF39982.698ENSOMEG00000010647cpsf39482.698Oryzias_melastigma
ENSPSIG00000016144CPSF310083.724ENSOGAG00000001680CPSF39983.724Otolemur_garnettii
ENSPSIG00000016144CPSF310094.143ENSOARG00000015073CPSF39994.143Ovis_aries
ENSPSIG00000016144CPSF310093.851ENSPPAG00000042457CPSF39993.851Pan_paniscus
ENSPSIG00000016144CPSF310093.851ENSPPRG00000016790CPSF310094.590Panthera_pardus
ENSPSIG00000016144CPSF39993.833ENSPTIG00000003920CPSF310094.488Panthera_tigris_altaica
ENSPSIG00000016144CPSF310093.851ENSPTRG00000011638CPSF39993.851Pan_troglodytes
ENSPSIG00000016144CPSF310093.558ENSPANG00000016798CPSF39993.558Papio_anubis
ENSPSIG00000016144CPSF39987.812ENSPKIG00000023646cpsf39988.527Paramormyrops_kingsleyae
ENSPSIG00000016144CPSF37988.235ENSPMGG00000006141-9488.235Periophthalmus_magnuspinnatus
ENSPSIG00000016144CPSF35978.272ENSPMGG00000015311CPSF39978.272Periophthalmus_magnuspinnatus
ENSPSIG00000016144CPSF310093.704ENSPEMG00000017668Cpsf39993.704Peromyscus_maniculatus_bairdii
ENSPSIG00000016144CPSF37889.179ENSPMAG00000004841cpsf39889.179Petromyzon_marinus
ENSPSIG00000016144CPSF39894.760ENSPCIG00000009823CPSF39994.760Phascolarctos_cinereus
ENSPSIG00000016144CPSF39987.206ENSPFOG00000010418-9887.206Poecilia_formosa
ENSPSIG00000016144CPSF39983.871ENSPFOG00000015922cpsf39983.871Poecilia_formosa
ENSPSIG00000016144CPSF35981.436ENSPLAG00000021300-9981.436Poecilia_latipinna
ENSPSIG00000016144CPSF39983.871ENSPLAG00000000882cpsf39983.871Poecilia_latipinna
ENSPSIG00000016144CPSF39984.018ENSPMEG00000018309cpsf39984.018Poecilia_mexicana
ENSPSIG00000016144CPSF39981.618ENSPREG00000004482CPSF39881.618Poecilia_reticulata
ENSPSIG00000016144CPSF39282.540ENSPREG00000014875cpsf39982.540Poecilia_reticulata
ENSPSIG00000016144CPSF310089.312ENSPPYG00000012666CPSF39989.312Pongo_abelii
ENSPSIG00000016144CPSF39063.132ENSPCAG00000015042CPSF39463.132Procavia_capensis
ENSPSIG00000016144CPSF39085.811ENSPCOG00000023016CPSF39985.811Propithecus_coquereli
ENSPSIG00000016144CPSF39993.979ENSPVAG00000005324CPSF39993.979Pteropus_vampyrus
ENSPSIG00000016144CPSF37990.792ENSPNYG00000021047CPSF39190.792Pundamilia_nyererei
ENSPSIG00000016144CPSF39985.044ENSPNYG00000004405cpsf39985.044Pundamilia_nyererei
ENSPSIG00000016144CPSF39986.176ENSPNAG00000023060cpsf39985.215Pygocentrus_nattereri
ENSPSIG00000016144CPSF39993.392ENSRNOG00000052418Cpsf39993.392Rattus_norvegicus
ENSPSIG00000016144CPSF310087.848ENSRBIG00000041615CPSF39989.954Rhinopithecus_bieti
ENSPSIG00000016144CPSF310093.851ENSRROG00000033792CPSF39994.478Rhinopithecus_roxellana
ENSPSIG00000016144CPSF39640.448YLR277CYSH19640.448Saccharomyces_cerevisiae
ENSPSIG00000016144CPSF39890.164ENSSBOG00000027263CPSF39790.164Saimiri_boliviensis_boliviensis
ENSPSIG00000016144CPSF310093.997ENSSHAG00000007024CPSF39993.997Sarcophilus_harrisii
ENSPSIG00000016144CPSF39987.959ENSSFOG00015002108cpsf39988.468Scleropages_formosus
ENSPSIG00000016144CPSF39586.111ENSSMAG00000020534CPSF39586.111Scophthalmus_maximus
ENSPSIG00000016144CPSF39984.751ENSSDUG00000002828cpsf39684.751Seriola_dumerili
ENSPSIG00000016144CPSF39986.931ENSSDUG00000018498CPSF39886.931Seriola_dumerili
ENSPSIG00000016144CPSF39984.751ENSSLDG00000008469cpsf39189.813Seriola_lalandi_dorsalis
ENSPSIG00000016144CPSF39986.931ENSSLDG00000005234CPSF39886.931Seriola_lalandi_dorsalis
ENSPSIG00000016144CPSF310076.720ENSSARG00000005186CPSF39976.720Sorex_araneus
ENSPSIG00000016144CPSF39893.611ENSSPUG00000015525CPSF39893.611Sphenodon_punctatus
ENSPSIG00000016144CPSF39984.457ENSSPAG00000018579cpsf39984.457Stegastes_partitus
ENSPSIG00000016144CPSF39986.784ENSSPAG00000002906CPSF39886.784Stegastes_partitus
ENSPSIG00000016144CPSF39994.282ENSSSCG00000020799CPSF39994.282Sus_scrofa
ENSPSIG00000016144CPSF39995.894ENSTGUG00000013016CPSF39995.894Taeniopygia_guttata
ENSPSIG00000016144CPSF39984.435ENSTRUG00000007030cpsf39784.435Takifugu_rubripes
ENSPSIG00000016144CPSF35972.727ENSTRUG00000013905CPSF39972.727Takifugu_rubripes
ENSPSIG00000016144CPSF38591.758ENSTBEG00000002707CPSF38491.758Tupaia_belangeri
ENSPSIG00000016144CPSF38882.258ENSTTRG00000000861CPSF38782.258Tursiops_truncatus
ENSPSIG00000016144CPSF39991.618ENSUAMG00000007535CPSF39891.618Ursus_americanus
ENSPSIG00000016144CPSF39595.054ENSUMAG00000003676CPSF310095.054Ursus_maritimus
ENSPSIG00000016144CPSF39393.691ENSVPAG00000008041CPSF310093.691Vicugna_pacos
ENSPSIG00000016144CPSF310094.290ENSVVUG00000002194CPSF39994.290Vulpes_vulpes
ENSPSIG00000016144CPSF39988.840ENSXETG00000008263cpsf39888.840Xenopus_tropicalis
ENSPSIG00000016144CPSF35479.784ENSXCOG00000000957-8779.784Xiphophorus_couchianus
ENSPSIG00000016144CPSF39983.871ENSXCOG00000019695cpsf39983.871Xiphophorus_couchianus
ENSPSIG00000016144CPSF39987.206ENSXMAG00000027291CPSF39887.206Xiphophorus_maculatus
ENSPSIG00000016144CPSF39983.871ENSXMAG00000009784cpsf310084.235Xiphophorus_maculatus

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