EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPSIG00000017054 (Gene tree)
Gene ID: 102448812
Gene Symbol: LSM8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 4207 bases
Position: chrJH208680.1:7396366-7400572
Accession: 102448812
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000019195	LSM	PF01423.22	9.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000019285	LSM8-201	2086	XM_006122545	ENSPSIP00000019195	75 (aa)	XP_006122607	K7GFY4

Gene Model

Click here to download ENSPSIG00000017054's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03018	RNA degradation	KEGG
pss03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000017054's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPSIG00000017054	LSM8	89	34.328	ENSPSIG00000012563	LSM1	51	34.328

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000017054	LSM8	100	100.000	ENSG00000128534	LSM8	100	100.000	Homo_sapiens
ENSPSIG00000017054	LSM8	100	97.333	ENSAPOG00000008649	lsm8	78	97.333	Acanthochromis_polyacanthus
ENSPSIG00000017054	LSM8	100	100.000	ENSAMEG00000001162	LSM8	78	100.000	Ailuropoda_melanoleuca
ENSPSIG00000017054	LSM8	100	97.333	ENSACIG00000014694	lsm8	100	97.333	Amphilophus_citrinellus
ENSPSIG00000017054	LSM8	100	97.333	ENSAOCG00000013926	lsm8	78	97.333	Amphiprion_ocellaris
ENSPSIG00000017054	LSM8	100	97.333	ENSAPEG00000023502	lsm8	78	97.333	Amphiprion_percula
ENSPSIG00000017054	LSM8	100	97.333	ENSATEG00000023432	lsm8	100	97.333	Anabas_testudineus
ENSPSIG00000017054	LSM8	100	98.667	ENSAPLG00000005115	LSM8	76	98.667	Anas_platyrhynchos
ENSPSIG00000017054	LSM8	100	100.000	ENSANAG00000027771	LSM8	100	97.297	Aotus_nancymaae
ENSPSIG00000017054	LSM8	100	97.333	ENSACLG00000011253	lsm8	78	97.333	Astatotilapia_calliptera
ENSPSIG00000017054	LSM8	100	98.667	ENSAMXG00000042902	lsm8	78	98.667	Astyanax_mexicanus
ENSPSIG00000017054	LSM8	100	100.000	ENSBTAG00000012649	LSM8	78	100.000	Bos_taurus
ENSPSIG00000017054	LSM8	97	57.534	WBGene00003082	lsm-8	74	57.534	Caenorhabditis_elegans
ENSPSIG00000017054	LSM8	100	100.000	ENSCJAG00000046406	LSM8	100	97.297	Callithrix_jacchus
ENSPSIG00000017054	LSM8	99	100.000	ENSCAFG00000016459	LSM8	75	100.000	Canis_familiaris
ENSPSIG00000017054	LSM8	100	100.000	ENSCAFG00020007643	-	78	100.000	Canis_lupus_dingo
ENSPSIG00000017054	LSM8	100	85.333	ENSCAFG00020012800	-	59	85.333	Canis_lupus_dingo
ENSPSIG00000017054	LSM8	100	100.000	ENSCHIG00000014201	LSM8	80	100.000	Capra_hircus
ENSPSIG00000017054	LSM8	100	100.000	ENSTSYG00000032434	LSM8	78	100.000	Carlito_syrichta
ENSPSIG00000017054	LSM8	99	98.649	ENSCAPG00000008253	LSM8	100	98.649	Cavia_aperea
ENSPSIG00000017054	LSM8	100	100.000	ENSCPOG00000035673	LSM8	78	100.000	Cavia_porcellus
ENSPSIG00000017054	LSM8	100	100.000	ENSCCAG00000021329	LSM8	100	97.297	Cebus_capucinus
ENSPSIG00000017054	LSM8	100	100.000	ENSCATG00000045302	LSM8	100	97.297	Cercocebus_atys
ENSPSIG00000017054	LSM8	100	100.000	ENSCLAG00000003726	LSM8	78	100.000	Chinchilla_lanigera
ENSPSIG00000017054	LSM8	100	100.000	ENSCSAG00000010802	-	78	100.000	Chlorocebus_sabaeus
ENSPSIG00000017054	LSM8	100	97.333	ENSCSAG00000019007	-	78	97.333	Chlorocebus_sabaeus
ENSPSIG00000017054	LSM8	100	100.000	ENSCPBG00000008154	LSM8	77	100.000	Chrysemys_picta_bellii
ENSPSIG00000017054	LSM8	100	80.000	ENSCING00000024877	-	78	80.000	Ciona_intestinalis
ENSPSIG00000017054	LSM8	100	100.000	ENSCANG00000040728	LSM8	100	97.297	Colobus_angolensis_palliatus
ENSPSIG00000017054	LSM8	100	100.000	ENSCGRG00001000450	Lsm8	78	100.000	Cricetulus_griseus_chok1gshd
ENSPSIG00000017054	LSM8	100	100.000	ENSCGRG00000005587	Lsm8	88	100.000	Cricetulus_griseus_crigri
ENSPSIG00000017054	LSM8	96	95.833	ENSCSEG00000004164	lsm8	79	95.833	Cynoglossus_semilaevis
ENSPSIG00000017054	LSM8	100	96.000	ENSCVAG00000020547	lsm8	78	96.000	Cyprinodon_variegatus
ENSPSIG00000017054	LSM8	100	97.333	ENSDARG00000091656	lsm8	78	97.333	Danio_rerio
ENSPSIG00000017054	LSM8	100	100.000	ENSDNOG00000034613	LSM8	78	100.000	Dasypus_novemcinctus
ENSPSIG00000017054	LSM8	100	100.000	ENSDORG00000027868	Lsm8	78	100.000	Dipodomys_ordii
ENSPSIG00000017054	LSM8	97	71.233	FBgn0035271	CG2021	77	71.233	Drosophila_melanogaster
ENSPSIG00000017054	LSM8	100	98.667	ENSETEG00000011594	LSM8	78	98.667	Echinops_telfairi
ENSPSIG00000017054	LSM8	99	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSPSIG00000017054	LSM8	100	100.000	ENSECAG00000024025	LSM8	71	100.000	Equus_caballus
ENSPSIG00000017054	LSM8	100	94.667	ENSELUG00000010138	lsm8	78	94.667	Esox_lucius
ENSPSIG00000017054	LSM8	89	73.134	ENSFCAG00000044794	-	66	73.134	Felis_catus
ENSPSIG00000017054	LSM8	100	100.000	ENSFCAG00000036620	-	78	100.000	Felis_catus
ENSPSIG00000017054	LSM8	100	98.667	ENSFALG00000010023	LSM8	78	98.667	Ficedula_albicollis
ENSPSIG00000017054	LSM8	100	100.000	ENSFDAG00000019530	LSM8	78	100.000	Fukomys_damarensis
ENSPSIG00000017054	LSM8	100	97.333	ENSFHEG00000013729	lsm8	78	97.333	Fundulus_heteroclitus
ENSPSIG00000017054	LSM8	100	98.667	ENSGALG00000009110	LSM8	78	98.667	Gallus_gallus
ENSPSIG00000017054	LSM8	100	96.000	ENSGAFG00000001135	lsm8	78	96.000	Gambusia_affinis
ENSPSIG00000017054	LSM8	100	100.000	ENSGAGG00000017366	LSM8	78	100.000	Gopherus_agassizii
ENSPSIG00000017054	LSM8	100	100.000	ENSGGOG00000041883	LSM8	78	100.000	Gorilla_gorilla
ENSPSIG00000017054	LSM8	100	97.333	ENSHBUG00000003646	lsm8	78	97.333	Haplochromis_burtoni
ENSPSIG00000017054	LSM8	100	93.333	ENSHGLG00000019782	-	78	93.333	Heterocephalus_glaber_female
ENSPSIG00000017054	LSM8	63	100.000	ENSHGLG00000001988	-	68	100.000	Heterocephalus_glaber_female
ENSPSIG00000017054	LSM8	100	94.667	ENSHGLG00100012166	-	78	94.667	Heterocephalus_glaber_male
ENSPSIG00000017054	LSM8	99	95.946	ENSHGLG00100003934	-	74	95.946	Heterocephalus_glaber_male
ENSPSIG00000017054	LSM8	100	96.000	ENSHCOG00000005037	lsm8	78	96.000	Hippocampus_comes
ENSPSIG00000017054	LSM8	100	98.667	ENSIPUG00000019811	NAA38	78	98.667	Ictalurus_punctatus
ENSPSIG00000017054	LSM8	100	86.667	ENSSTOG00000034801	-	69	86.667	Ictidomys_tridecemlineatus
ENSPSIG00000017054	LSM8	100	100.000	ENSSTOG00000009039	LSM8	78	100.000	Ictidomys_tridecemlineatus
ENSPSIG00000017054	LSM8	100	100.000	ENSJJAG00000009031	Lsm8	77	100.000	Jaculus_jaculus
ENSPSIG00000017054	LSM8	100	97.333	ENSKMAG00000018983	lsm8	78	97.333	Kryptolebias_marmoratus
ENSPSIG00000017054	LSM8	100	96.000	ENSLACG00000010231	LSM8	78	96.000	Latimeria_chalumnae
ENSPSIG00000017054	LSM8	100	97.333	ENSLOCG00000015580	lsm8	78	97.333	Lepisosteus_oculatus
ENSPSIG00000017054	LSM8	100	100.000	ENSLAFG00000011242	LSM8	77	100.000	Loxodonta_africana
ENSPSIG00000017054	LSM8	100	100.000	ENSMFAG00000035798	LSM8	100	97.297	Macaca_fascicularis
ENSPSIG00000017054	LSM8	100	96.000	ENSMFAG00000013044	-	78	96.000	Macaca_fascicularis
ENSPSIG00000017054	LSM8	100	100.000	ENSMMUG00000046401	LSM8	100	97.297	Macaca_mulatta
ENSPSIG00000017054	LSM8	100	96.000	ENSMNEG00000011141	-	100	96.000	Macaca_nemestrina
ENSPSIG00000017054	LSM8	100	100.000	ENSMNEG00000036764	-	100	97.297	Macaca_nemestrina
ENSPSIG00000017054	LSM8	100	100.000	ENSMLEG00000035828	-	100	97.297	Mandrillus_leucophaeus
ENSPSIG00000017054	LSM8	100	82.667	ENSMLEG00000039324	-	76	82.667	Mandrillus_leucophaeus
ENSPSIG00000017054	LSM8	100	97.333	ENSMAMG00000018839	lsm8	100	97.333	Mastacembelus_armatus
ENSPSIG00000017054	LSM8	100	97.333	ENSMZEG00005019138	lsm8	78	97.333	Maylandia_zebra
ENSPSIG00000017054	LSM8	100	98.667	ENSMGAG00000008808	LSM8	78	98.667	Meleagris_gallopavo
ENSPSIG00000017054	LSM8	99	90.541	ENSMAUG00000020287	-	100	90.541	Mesocricetus_auratus
ENSPSIG00000017054	LSM8	100	90.667	ENSMAUG00000015721	-	78	90.667	Mesocricetus_auratus
ENSPSIG00000017054	LSM8	100	78.667	ENSMAUG00000015356	-	75	78.667	Mesocricetus_auratus
ENSPSIG00000017054	LSM8	100	100.000	ENSMICG00000042730	LSM8	78	100.000	Microcebus_murinus
ENSPSIG00000017054	LSM8	100	100.000	ENSMOCG00000001688	Lsm8	78	100.000	Microtus_ochrogaster
ENSPSIG00000017054	LSM8	100	97.333	ENSMMOG00000006046	lsm8	100	97.333	Mola_mola
ENSPSIG00000017054	LSM8	97	86.667	ENSMODG00000015729	LSM8	96	86.667	Monodelphis_domestica
ENSPSIG00000017054	LSM8	100	97.333	ENSMALG00000000405	lsm8	78	97.333	Monopterus_albus
ENSPSIG00000017054	LSM8	100	100.000	MGP_CAROLIEiJ_G0028125	-	78	100.000	Mus_caroli
ENSPSIG00000017054	LSM8	100	100.000	ENSMUSG00000044155	Lsm8	78	100.000	Mus_musculus
ENSPSIG00000017054	LSM8	100	100.000	MGP_PahariEiJ_G0021881	Lsm8	100	100.000	Mus_pahari
ENSPSIG00000017054	LSM8	100	100.000	MGP_SPRETEiJ_G0029125	-	78	100.000	Mus_spretus
ENSPSIG00000017054	LSM8	100	98.667	ENSMLUG00000027762	-	78	98.667	Myotis_lucifugus
ENSPSIG00000017054	LSM8	100	100.000	ENSMLUG00000006837	-	78	100.000	Myotis_lucifugus
ENSPSIG00000017054	LSM8	100	100.000	ENSNGAG00000016554	Lsm8	78	100.000	Nannospalax_galili
ENSPSIG00000017054	LSM8	100	97.333	ENSNBRG00000014441	lsm8	78	97.333	Neolamprologus_brichardi
ENSPSIG00000017054	LSM8	100	100.000	ENSNLEG00000011768	LSM8	78	100.000	Nomascus_leucogenys
ENSPSIG00000017054	LSM8	100	86.667	ENSMEUG00000007801	LSM8	78	86.667	Notamacropus_eugenii
ENSPSIG00000017054	LSM8	100	100.000	ENSOPRG00000014809	LSM8	88	100.000	Ochotona_princeps
ENSPSIG00000017054	LSM8	87	83.077	ENSODEG00000020290	-	76	83.077	Octodon_degus
ENSPSIG00000017054	LSM8	100	100.000	ENSODEG00000000418	-	78	100.000	Octodon_degus
ENSPSIG00000017054	LSM8	100	100.000	ENSOANG00000014536	LSM8	78	100.000	Ornithorhynchus_anatinus
ENSPSIG00000017054	LSM8	100	100.000	ENSOCUG00000017359	LSM8	77	100.000	Oryctolagus_cuniculus
ENSPSIG00000017054	LSM8	96	97.222	ENSORLG00000017432	lsm8	77	97.222	Oryzias_latipes
ENSPSIG00000017054	LSM8	96	97.222	ENSORLG00020004376	lsm8	77	97.222	Oryzias_latipes_hni
ENSPSIG00000017054	LSM8	100	97.333	ENSORLG00015003757	lsm8	78	97.333	Oryzias_latipes_hsok
ENSPSIG00000017054	LSM8	92	97.101	ENSOMEG00000022509	lsm8	83	93.333	Oryzias_melastigma
ENSPSIG00000017054	LSM8	100	100.000	ENSOGAG00000013377	LSM8	78	100.000	Otolemur_garnettii
ENSPSIG00000017054	LSM8	100	100.000	ENSOARG00000017974	LSM8	78	100.000	Ovis_aries
ENSPSIG00000017054	LSM8	100	100.000	ENSPPAG00000043228	-	100	100.000	Pan_paniscus
ENSPSIG00000017054	LSM8	100	100.000	ENSPPRG00000006444	LSM8	78	100.000	Panthera_pardus
ENSPSIG00000017054	LSM8	100	100.000	ENSPTIG00000004722	LSM8	78	100.000	Panthera_tigris_altaica
ENSPSIG00000017054	LSM8	100	100.000	ENSPTRG00000046596	-	100	100.000	Pan_troglodytes
ENSPSIG00000017054	LSM8	100	94.667	ENSPANG00000019395	-	78	94.667	Papio_anubis
ENSPSIG00000017054	LSM8	100	100.000	ENSPANG00000035470	-	100	97.297	Papio_anubis
ENSPSIG00000017054	LSM8	100	97.333	ENSPKIG00000006092	lsm8	76	97.333	Paramormyrops_kingsleyae
ENSPSIG00000017054	LSM8	100	97.333	ENSPMGG00000016442	lsm8	100	97.333	Periophthalmus_magnuspinnatus
ENSPSIG00000017054	LSM8	99	97.297	ENSPEMG00000009153	Lsm8	100	97.297	Peromyscus_maniculatus_bairdii
ENSPSIG00000017054	LSM8	96	100.000	ENSPCIG00000021467	LSM8	76	100.000	Phascolarctos_cinereus
ENSPSIG00000017054	LSM8	100	96.000	ENSPFOG00000012340	lsm8	78	96.000	Poecilia_formosa
ENSPSIG00000017054	LSM8	100	96.000	ENSPLAG00000000516	lsm8	78	96.000	Poecilia_latipinna
ENSPSIG00000017054	LSM8	100	96.000	ENSPMEG00000022567	lsm8	78	96.000	Poecilia_mexicana
ENSPSIG00000017054	LSM8	97	85.000	ENSPREG00000005527	lsm8	72	85.000	Poecilia_reticulata
ENSPSIG00000017054	LSM8	100	100.000	ENSPPYG00000017942	LSM8	78	100.000	Pongo_abelii
ENSPSIG00000017054	LSM8	100	100.000	ENSPCOG00000003309	-	78	100.000	Propithecus_coquereli
ENSPSIG00000017054	LSM8	99	75.676	ENSPCOG00000017982	-	74	75.676	Propithecus_coquereli
ENSPSIG00000017054	LSM8	100	98.667	ENSPVAG00000000990	LSM8	88	98.667	Pteropus_vampyrus
ENSPSIG00000017054	LSM8	100	97.333	ENSPNYG00000011448	lsm8	78	97.333	Pundamilia_nyererei
ENSPSIG00000017054	LSM8	100	98.667	ENSPNAG00000010252	lsm8	78	98.667	Pygocentrus_nattereri
ENSPSIG00000017054	LSM8	100	100.000	ENSRNOG00000058677	Lsm8	78	100.000	Rattus_norvegicus
ENSPSIG00000017054	LSM8	100	100.000	ENSRBIG00000032851	LSM8	100	97.297	Rhinopithecus_bieti
ENSPSIG00000017054	LSM8	100	100.000	ENSRROG00000039618	LSM8	100	97.297	Rhinopithecus_roxellana
ENSPSIG00000017054	LSM8	100	100.000	ENSSBOG00000023223	LSM8	100	97.297	Saimiri_boliviensis_boliviensis
ENSPSIG00000017054	LSM8	100	100.000	ENSSHAG00000018435	-	78	100.000	Sarcophilus_harrisii
ENSPSIG00000017054	LSM8	100	96.000	ENSSFOG00015004412	lsm8	78	96.000	Scleropages_formosus
ENSPSIG00000017054	LSM8	100	97.333	ENSSMAG00000009458	lsm8	100	97.333	Scophthalmus_maximus
ENSPSIG00000017054	LSM8	100	97.333	ENSSDUG00000014702	lsm8	78	97.333	Seriola_dumerili
ENSPSIG00000017054	LSM8	100	97.333	ENSSLDG00000016870	lsm8	100	97.333	Seriola_lalandi_dorsalis
ENSPSIG00000017054	LSM8	96	100.000	ENSSARG00000009628	-	100	100.000	Sorex_araneus
ENSPSIG00000017054	LSM8	100	100.000	ENSSPUG00000017419	LSM8	78	100.000	Sphenodon_punctatus
ENSPSIG00000017054	LSM8	100	97.333	ENSSPAG00000021422	lsm8	78	97.333	Stegastes_partitus
ENSPSIG00000017054	LSM8	100	100.000	ENSSSCG00000021652	LSM8	78	100.000	Sus_scrofa
ENSPSIG00000017054	LSM8	100	98.667	ENSTGUG00000004730	-	78	98.667	Taeniopygia_guttata
ENSPSIG00000017054	LSM8	100	97.333	ENSTGUG00000016823	-	78	97.333	Taeniopygia_guttata
ENSPSIG00000017054	LSM8	100	97.333	ENSTRUG00000025192	lsm8	78	97.333	Takifugu_rubripes
ENSPSIG00000017054	LSM8	100	97.333	ENSTNIG00000002864	lsm8	78	97.333	Tetraodon_nigroviridis
ENSPSIG00000017054	LSM8	100	100.000	ENSTTRG00000001023	LSM8	78	100.000	Tursiops_truncatus
ENSPSIG00000017054	LSM8	100	100.000	ENSUAMG00000006943	-	78	100.000	Ursus_americanus
ENSPSIG00000017054	LSM8	100	100.000	ENSUMAG00000003073	LSM8	80	100.000	Ursus_maritimus
ENSPSIG00000017054	LSM8	100	100.000	ENSVPAG00000001530	LSM8	78	100.000	Vicugna_pacos
ENSPSIG00000017054	LSM8	100	97.333	ENSVVUG00000013248	-	82	97.333	Vulpes_vulpes
ENSPSIG00000017054	LSM8	100	97.333	ENSXETG00000021829	lsm8	77	97.333	Xenopus_tropicalis
ENSPSIG00000017054	LSM8	100	94.667	ENSXCOG00000012938	lsm8	79	94.667	Xiphophorus_couchianus
ENSPSIG00000017054	LSM8	100	96.000	ENSXMAG00000025919	lsm8	78	96.000	Xiphophorus_maculatus